Early Cretaceous Gleicheniaceae and Matoniaceae (Gleicheniales) from Alexander Island,Antarctica

The first Cretaceous representatives of Matoniaceae and Gleicheniaceae in the Antarctic are described from the Albian flora of Alexander Island. Two new species are recognized, one is assigned to Matonia, and another to the emended gleicheniaceous form-genus Gleicheniaceaephyllum. The taxonomy of fossil genera assigned to Gleicheniaceae is problematic, and as an alternative to the invalid genus Gleichenites, we propose that Microphyllopteris be utilised as a form-genus for species that have either an unknown branching pattern or pseudo-dichotomous branching without resting buds; Microphyllopteris is reserved for ferns that cannot be ascribed conclusively to Gleicheniaceae. Alternatively, Gleicheniaceaephyllum should be used for gleicheniaceous material that has a resting bud amongst two to four primary branches. Gleicheniaceaephyllum acutum sp. nov. is preserved as sterile and fertile fronds, pinnae and pinnules. The other new species, Matonia jeffersonii sp. nov., occurs as sterile and fertile pinnae and pinnules, and is aligned to Matoniaceae based on the presence of circular-oval sori with peltate indusia. The two taxa are inferred to have either a pedate or scrambling habit. These morphologies are relatively common at Alexander Island, compared to other high latitude fossil floras, and are interpreted as an adaptation to the high disturbance, polar conditions and unusual photoperiod experienced at Alexander Island during the Early Cretaceous. The theory that angiosperms caused the demise of ferns is discussed in relation to the Matoniaceae and Gleicheniaceae, and there does not appear to be association between angiosperm expansion and the decline of these two fern families.     

Molecular phylogenetic and molecular dating of the New Zealand Gleicheniaceae

The Gleicheniaceae are an ancient family of ferns, with three of the six extant genera occurring in New Zealand:Dicranopteris, Gleichenia, andSticherus. The biogeographic origins of this family in New Zeland are unknown, and the taxonomy ofGleichenia in particular is still unclear. To address aspects of these two issues, DNA sequences from thetrnL-trnF locus and therbcL gene were produced for all of the common Gleicheniaceae species in New Zealand, as well as forGleichenia alpina from Tasmania andSticherus cryptocarpus from Chile. SeveraltrnL-trnF haplotypes were found amongst New ZealandG. dicarpa. One of these haplotypes was also observed in TasmanianG. alpina, while the other New ZealandG. dicarpa trnL-trnF haplotypes were more similar to those ofG. microphylla. These results suggest the taxonomy of New ZealandGleichenia may be more complex than presently recognized. Molecular dating of therbcL sequences with the program r8s rejected vicariant explanations for the disjunct distributions between New Zealand and elsewhere for each ofDicranopteris, Gleichenia, andSticherus. However, the direction of the inferred long-distance dispersal was not resolved.     

In Silico Analysis of Crustacean Hyperglycemic Hormone Family

Through multiple sequence alignment and phylogenetic analysis, the subgrouping of the crustacean hyperglycemic hormone (CHH) family was updated using the most complete, nonredundant sequence data set. All sequences from insects were clustered into a distinct subbranch with characters closer to CHH subfamily I. Several sequences that are controversial in their nomenclature and classification are discussed. The motif configuration of CHHs differs from that of molt-inhibiting hormone or gonad-inhibiting hormone in both N and C termini. These two motifs approach each other in tertiary structure models, and the motif preference reveals the critical roles of these regions in functional specificity. Two types of exon organizations of the CHH family genes were observed. Four-exon Chh genes were found in a wide range of pan-crustacean (crustacean and hexapod) taxa, except for the penaeid species, from which the 3-exon Chh genes were reported. Meanwhile, the 3-exon structure was found in the Mih gene and Moih genes from one brachyuran species. Combining gene scan skill and exon splicing rules found in this study, we define three more novel sequences from two insect genomes. The pattern of the exon-exon junction within the mature peptide segment is preserved in all CHH family members.The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint first authors.     

里白科植物的系统发育和分歧时间估计——基于叶绿体三个基因序列的证据

里白科(Gleicheniaceae)是古老的真蕨类植物,最早的化石记录可追溯到石炭纪。现存类群的属级分类和系统演化关系一直存在很大的分歧,为了进一步探讨该类群的起源演化,文中运用最大简约法和贝叶斯演绎方法对18种代表现存里白科植物全部6属(包括新测的12种)的叶绿体3个编码基因序列(atpB,rbcL和rps4)进行分析,探讨其主要分类群(属级)的系统演化关系。结果显示,里白科植物为一个单系群,由3个分支构成:里白属(Diplopterygium Nakai)和Gleichenia japonica构成一个分支;芒萁属(Dicranopteris Bernh.)和Gleichenella pec-tinata构成另一个分支;假芒萁属(Sticherus C.Presl)与单种属Stromatopteris Mettenius及Gleichenia dicarpa构成第三个分支。用宽松分子钟方法推测里白科主要类群的起源时间为:现代里白科植物起源于早白垩世(111—140Ma),其主要分支类群随后发生多样性分化,里白属和芒萁属的快速辐射演化均发生在古近纪(40—64Ma,36—50Ma)。起源时间的估算结果暗示化石种三叠里白Diplopterygium triassica不应归入现代里白属,其归属需要重新考虑。     

Molecular taxonomy of Brazilian tyrant-flycatchers (Passeriformes: Tyrannidae)

The tyrannids are one of the most diverse groups of birds in the world, and the most numerous suboscine family in the Neotropics. Reflecting such diversity, many taxonomic issues arise in this group, mainly due to morphological similarities, even among phylogenetically distant species. Other issues appear at higher taxonomic levels, mostly brought up by genetic studies, making systematics a rather inconclusive issue. This study looks into the use of DNA barcodes method to discriminate and identify Tyrannidae species occurring in the Atlantic Forest and Cerrado biomes of Brazil. We analysed 266 individuals of 71 tyrant‐flycatcher species from different geographical locations by sequencing 542 bp of the mtDNA COI gene. The great majority of the analysed species showed exclusive haplotypes, usually displaying low intraspecific diversity and high interspecific divergence. Only Casiornis fuscus and Casiornis rufus, suggested in some studies to belong to a single species, could not be phylogenetically separated. High intraspecific diversity was observed among Elaenia obscura individuals, which can suggest the existence of cryptic species in this taxon. The same was also observed for Suiriri suiriri, considered by some authors to comprise at least two species, and by others to be divided into three subspecies. Additionally, the use of sequences from voucher specimens allowed us to correct four misidentifications that had happened in the field. Our findings suggest a great power of the COI barcodes to discriminate species of the Tyrannidae family that are found in Brazil.     

Distribution and biogeography of the Paradiaptominae (Copepoda: Calanoida: Diaptomidae)

The Paradiaptominae, a subfamily of the large Diaptomidae family, is a small group of freshwater calanoids of which 24 species in four genera have been described. They are endemic to Africa with the exception of four species, Metadiaptomus asiaticus (Asia and Mongolia), M. gauthieri (Africa and Madagascar), Paradiaptomus greeni (India and Sri Lanka) and Neolovenula alluaudi (Canary Islands, North Africa, Baltic and Mediterranean countries). The North African species Metadiaptomus chevreuxi extends its range into Iraq and Iran. The Paradiaptominae are widely distributed in semi-permanent water bodies in the drier areas of Africa although most individual species have a restricted distribution. Only a few species have the ability to colonise permanent waters and these species are usually located at higher altitudes. The Paradiaptominae have not been recorded from the wet equatorial lowland areas of Africa. It seems likely that they are Gondwanian in origin as evidenced by their distribution (Africa, Madagascar, India and Sri Lanka). Neolovenula alluaudi (Mediterranean) shares morphological characters tenuously linked to the other species in the group and may either have a different origin or have branched off at an early stage in evolution of the group.     

Flavonoids and chemotaxonomy of the Commelinaceae

Diverse schemes have been proposed for the classification of the Commelinaceae on the basis of different characters. The leaf flavonoids of 152 species have been analysed. The flavone C-glycosides are the dominant compounds, found in 78% of the species examined. Flavonol O-glycosides are present in 28% of the species, quercetin being the most frequent aglycone. 6-Hydroxyluteolin was found mainly in Tradescantia but also in other species (10%). Tricin has been detected sporadically in less than 5% of the species. In spite of these variations the pattern of the family is very uniform, because the presence of C-glycoflavones and the distribution of the other compounds supports the scheme proposed by Rohweder who divided the family into Commelinieae and Tradescantieae on the basis of inflorescence characters.     

Studies on the Chinese Woodsiaceae (3)—Phylogeny and Speciation

The history of the study on the woodsiodes is briefly surveyed in the paper. The family Woodsiaceae is recognized by the present author. The relationships among the species and the probable evolution of the family are discussed based on author's cytological and comparative morphological studies, and are indicated by Wagner's method, with numerical values as the indices. Woodsiaceae may have originated from the common ancestor of modern Dicranopteris and Sticherus of Gleicheniaceae, and evolved from it into two main branches, i.e., Woodsia and Protowoodsia. The origin of species through polyploid series are discussed, and W. andersonii, W. subcordata, W. alpina and Cheilanthopsis indosiosa considered as fertile allopolyploids; the probable way of speciation is also suggested for these species.     

四种番荔枝科(Annonaceae)植物导管分子及其穿孔板的比较观察

番荔枝科是被子植物基部类群,木兰目中最大的一个科。为了解暗罗属(Polyalthia)的海南暗罗(Polyalthia laui)、假鹰爪属(Desmos)的假鹰爪(Desmos chinensis)、紫玉盘属(Uvaria)的山椒子(Uvaria grandiflora)、瓜馥木属Fissistigma)的瓜馥木(Fissistigma oldhamii)四个种的导管与穿孔板的形态学特征,该研究利用扫描电子显微镜(SEM)对其导管分子及穿孔板形态进行观察,首次展示了这4属4种的导管分子与穿孔板的形态特征,并对其导管的长度与直径进行了分析与比较。结果表明:这四个种导管分子端壁均为单穿孔板,部分穿孔板具尾,不同种在导管与穿孔板形态上具有明显的差异;长度与直径的统计学分析显示其种间差异极显著,导管长度与直径的相关性分析显示其没有相关性。综合导管的形态学特征与统计学分析结果,该研究认为在这四个种中,假鹰爪的导管分子直径与长度变化幅度都不大,长度较短,直径最大,穿孔板平截,不具尾或具小尾,其导管分子处于较高的演化水平。     

Comparative morphology of the gas bladder in driftwood catfishes (Siluriformes: Auchenipteridae)

The gross morphology of the gas bladder is described and illustrated for representatives of most species and all valid genera of the Auchenipteridae (Siluriformes). Although, a simple cordiform gas bladder is present in some species of the family, others are characterized by their distinctive gas‐bladder shape and diverticula disposition. An acute posterior end of the gas bladder characterizes Centromochlus heckelii and C. macracanthus, and is variably present in specimens of Auchenipterus. Tocantinsia piresi and Asterophysus batrachus have distinctive gas bladders differing in number of diverticula (two or many). The two species of Trachycorystes are diagnosed based on their gas bladder morphology: T. menezesi has a simple cordiform bladder, whereas T. trachycorystes has a pair of lateral diverticulum and, usually, a well‐developed terminal diverticulum. Species of Auchenipterichthys are characterized by having a secondary bladder with simple chamber. Short or elongate and divergent terminal diverticula are exclusive to most cis‐andine species of Trachelyopterus. Tetranematichthys and trans‐andine species of Trachelyopterus share a well‐developed secondary chamber or terminal diverticula ventrally or dorsally connected to the posterior chambers. The small‐sized species of Ageneiosus have well‐developed gas bladders with a pair of posterior diverticula, whereas large‐sized species have a reduced gas bladder with tunica externa varying from non‐, partially, or completely ossified. Eight phylogenetic characters are proposed based on the morphology of the gas bladder and associated structures in species of Auchenipteridae, and the evolution of those characters in the family discussed. J. Morphol., 2012. © 2012 Wiley Periodicals, Inc.     

Composition,Seasonal Dynamics,and Long-Term Fluctuations in the Density of Pelagic Polychaetes in Amurskii Bay,Sea of Japan

This is the first survey of the composition and seasonal density dynamics of the pelagic polychaete larvae in Amurskii Bay. This is a summary of the results of two years of observations (1996–1998). The larvae of 14 polychaete families have been recorded. The greatest number of species have been found in the family Spionidae. The most common were the larvae of Harmothoe imbricata (family Polynoidae) and Paraprionospio sp. (family Spionidae). The larvae of polychaetes have been found in plankton throughout the year and have two density peaks. The first peak was due to the spawning of H. imbricata; the second one was provided by representatives of several species of the family Spionidae, mostly Paraprionospio sp., Polydora ciliata, and P. caeca.     

Evolution of karyotypes in snakes

Karyotype analysis and morphometric measurement of the chromosomes of 17 species of snakes have been done. Chromosomes of different species so far worked out in each family have been compared using quantitative methods to derive chromosomal affinities between species of different taxonomic categories. The following conclusions have been drawn: (i) It is suggested that the retention of Xenopeltidae as a separate family is unnecessary and the only species Xenopeltis unicolor referred to in that group should be included in the family Boidae. (ii) The subfamilies, Boinae and Pythoninae cannot be distinguished chromosomally. (iii) On the basis of chromosomal similarities, the cytologically known species of Colubridae. have been put into 13 different groupings which do not always correspond to the views of the present day colubrid taxonomists. (iv) In Hydrophiidae, speciation seems to have occurred through changes in the 4th pair of autosomes and sex chromosomes in general and the W chromosome in particular. Evidences are presented to show that fission and inversion have played an important role in bringing about the structural rearrangements in this group. (v) Family Viperidae according to taxonomists is divided into two subfamilies. Both the subfamilies are chromosomally very similar.     

New data on the water mite fauna (Acari,Hydrachnidia, Halacaroidea) of the Sakha Republic (Yakutia)

Examination of the water mite collection made by the authors in the territory of the Sakha Republic (Yakutia) in 2006 has revealed 43 mite species of the phalanx Hydrachnidia, belonging to 19 genera and 12 families, 1 species of the phalanx Trombidia, and 2 freshwater species of the superfamily Halacaroidea, belonging to 2 genera and 1 family. All the species registered, except for two species of the phalanx Hydrachnidia (Mixobates processifer and Lebertia porosa), were recorded in the Sakha Republic for the first time. The species Aturus miyashitai Uchida, 1934 and A. parapilosus Kim et Chung, 1993 (Hydrachnidia) and the family Johnstonianidae Thor, 1935 (Trombidia) are new for the Russian fauna. The female of A. parapilosus is described for the first time.     

A phylogeny reconstruction of the Dendrophylliidae (Cnidaria,Scleractinia) based on molecular and micromorphological criteria,and its ecological implications

Recent molecular phylogenetic studies have shown that most traditional families of zooxanthellate shallow‐water scleractinians are polyphyletic, whereas most families mainly composed of deep‐sea and azooxanthellate species are monophyletic. In this context, the family Dendrophylliidae (Cnidaria, Scleractinia) has unique features. It shows a remarkable variation of morphological and ecological traits by including species that are either colonial or solitary, zooxanthellate or azooxanthellate, and inhabiting shallow or deep water. Despite this morphological heterogeneity, recent molecular works have confirmed that this family is monophyletic. Nevertheless, what so far is known about the evolutionary relationships within this family, is predominantly based on skeleton macromorphology, while most of its species have remained unstudied from a molecular point of view. Therefore, we analysed 11 dendrophylliid genera, four of which were investigated for the first time, and 30 species at molecular, micromorphological and microstructural levels. We present a robust molecular phylogeny reconstruction based on two mitochondrial markers (COI and the intergenic spacer between COI and 16S) and one nuclear (rDNA), which is used as basis to compare micromorphogical and microstructural character states within the family. The monophyly of the Dendrophylliidae is well supported by molecular data and also by the presence of rapid accretion deposits, which are ca. 5 μm in diameter and arranged in irregular clusters, and fibres that thicken the skeleton organized in small patches of a few micrometres in diameter. However, all genera represented by at least two species are not monophyletic, Tubastraea excluded. They were defined by traditional macromorphological characters that appear affected by convergence, homoplasy and intraspecific variation. Micromorphogical and microstructural analyses do not support the distinction of clades, with the exception of the organization of thickening deposits for the Tubastraea clade.     

Rapid,complete reproductive isolation in two closely related Zosterops White‐eye bird species despite broadly overlapping ranges*

Examining what happens when two closely related species come into secondary contact provides insight into the later stages of the speciation process. The Zosteropidae family of birds is one of the most rapidly speciating vertebrate lineages. Members of this family are highly vagile and geographically widespread, raising the question of how divergence can occur if populations can easily come into secondary contact. On the small island of Kolombangara, two closely related nonsister species of white‐eyes, Zosterops kulambangrae and Zosterops murphyi, are distributed along an elevational gradient and come into secondary contact at mid‐elevations. We captured 134 individuals of both species along two elevational transects. Using genotyping‐by‐sequencing data and a mitochondrial marker, we found no evidence of past hybridization events and strong persistence of species boundaries, even though the species have only been diverging for approximately 2 million years. We explore potential reproductive barriers that allow the two species to coexist in sympatry, including premating isolation based on divergence in plumage and song. We also conducted a literature review to determine the time it takes to evolve complete reproductive isolation in congeneric avian species/subspecies in secondary contact (restricted to cases where congeneric taxa are parapatric or have a hybrid zone), finding our study is one of the youngest examples of complete reproductive isolation studied in a genomic context reported in birds.     

RECENT RADIATION OF THE PALMARIACEAE (RHODOPHYTA)1

Molecular phylogenetic studies on the evolution of the red algae indicate that this ancient division has many lineages that have recently undergone radiations. One such example is the cold–temperate family Palmariaceae. In this study, sequences from the ribosomal DNA internal transcribed spacer regions were compared among ten species in the Palmariaceae from both Atlantic and Pacific sites, Phylogenetic analyses of sequence data, in which Rhodophysema georgii Batters was used as outgroup and root, indicate a radiation into four clades, three of which contain species of “Palmaria” and the fourth species of Halosaccion. Palmaria palmata (L.) Kuntze, the type and only North Atlantic species in the genus, stands apart from all remaining species in the family and terminates the most basal branch in the rooted tree. The three more derived clades have radiated mainly in the North Pacific. Southern Ocean Palmaria and North Atlantic Devaleraea are hypothesized to have invaded from separate but closely related North Pacific ancestors. The ease with which sequences could be aligned combined with an unsaturated transition: transversion ratio and modest divergence involving predominantly point mutations suggests that the initial radiation is relatively recent (late Miocene–Pliocene) and that the Devaleraea–Palmaria clade is even more recent (late Pliocene–Pleistocene).     

A genome-specific repeat sequence from kiwifruit (Actinidia deliciosa var. deliciosa)

Summary Six members of a family of moderately repetitive DNA sequences from kiwifruit (Actinidia deliciosa var. deliciosa) have been cloned and characterized. The repeat family is composed of elements that have a unit length of 463 bp, are highly methylated, occur in tandem arrays of at least 50 kb in length, and constitute about 0.5% of the kiwifruit genome. Individual elements diverge in nucleotide sequence by up to 5%, which suggests that the repeat sequence is evolving rapidly. Homologous sequences were found in A. deliciosa var. chlorocarpa. The repeat sequence was not found under low stringency hybridization conditions in the diploid A. chinensis, the species most closely related to the hexaploid kiwifruit, or in eight other Actinidia species. However, homologous repeats were detected in a tetraploid species, A. chrysantha. The results provide the first molecular evidence to suggest that kiwifruit may be an allopolyploid species.     

Polyphyly of the hawk genera Leucopternis and Buteogallus (Aves, Accipitridae): multiple habitat shifts during the Neotropical buteonine diversification

Background  

The family Accipitridae (hawks, eagles and Old World vultures) represents a large radiation of predatory birds with an almost global distribution, although most species of this family occur in the Neotropics. Despite great morphological and ecological diversity, the evolutionary relationships in the family have been poorly explored at all taxonomic levels. Using sequences from four mitochondrial genes (12S, ATP8, ATP6, and ND6), we reconstructed the phylogeny of the Neotropical forest hawk genus Leucopternis and most of the allied genera of Neotropical buteonines. Our goals were to infer the evolutionary relationships among species of Leucopternis, estimate their relationships to other buteonine genera, evaluate the phylogenetic significance of the white and black plumage patterns common to most Leucopternis species, and assess general patterns of diversification of the group with respect to species' affiliations with Neotropical regions and habitats.