不同种源马尾松ISSR遗传结构及影响因素分析

应用ISSR分子标记技术,对来自广西、贵州3个种源的马尾松开展遗传多样性、遗传结构及遗传距离等研究。结果表明：从100条引物中筛选出12条引物,共扩增出92个条带,86条具有多态性。 POPGENE分析显示：马尾松群体水平上的Nei’ s基因多样性指数的变化范围为0.1824~0.2065,Shannon遗传多样性指数的变化范围为0.2818~0.3178,3个群体的多态性水平差异不大;物种水平上的多态性百分率为93.48％, Nei’ s基因多样性指数为0.2842,Shannon信息指数为0.4381;表明马尾松在物种水平上具有较高水平的遗传多样性。遗传结构分析显示：马尾松的基因分化系数( Gst)为0.3153,表明遗传变异主要来源于群体内;基因流Nm为1.0853,表明不同群体间存在一定的基因流动。 AMOVA分析显示：马尾松的遗传分化指数( Fst)为0.246( P＝0.001),表明群体间已出现明显的遗传分化。 UPGMA聚类和Mantel检测结果显示：每个群体内的个体均能很好地首先聚集为一个分支,群体间的遗传距离与地理距离之间存在显著相关性( r＝0.972, P＝0.001)。这说明马尾松在裸子植物界中具有较高水平的遗传多样性,遗传变异主要分布于群体内,群体间已出现了明显的遗传分化,这种分化并非由遗传漂变引起,可能与地理生境的差异有关。     

马尾松不同种源矿质营养与生长相关性分析

运用电感耦合等离子直读光谱仪（ＩＣＰ）,测定相同立地上马尾松（ＰｉｎｕｓｍａｓｏｎｉａｎａＬａｍｂ．）１０个种源针叶内２５种矿质营养元素含量的变异,分析矿质元素含量与树高、胸径生长量的相关性,认为利用常绿针叶树种休眠期内矿质元素含量的相对稳定性研究马尾松矿质营养水平是可靠的。矿质营养与产地经、纬度呈负相关。广东和广西的种源可作为江苏地区今后推广马尾松的主要种源。马尾松针叶内钙和锌含量可作为马尾松树高和胸径生长量的预测因子。初步认为马尾松属于高钙吸收和高锌利用型树种。     

马尾松桐棉种源天然群体遗传结构研究

广西桐棉是我国重要的马尾松优良种源区,该种源分布面积达1.56万hm2,马尾松遗传资源优质且丰富,但近30年来该地区的马尾松天然资源受到较为严重的破坏。为了解该地马尾松天然种质资源的遗传多样性现状,该研究利用SSR分子标记分析了桐棉马尾松的群体遗传结构。结果表明：16对 SSR 引物在285个样本中共检测到53个等位基因,多态位点百分率为100％。桐棉群体的平均等位基因数( N a )、平均有效等位基因数(Ne)、Shannon 多样性指数(I)、观测杂合度(Ho)、期望杂合度(He)分别为3.31、1.68、0.64、0.35和0.36,可见桐棉群体现今仍具有较高的遗传多样性。群体的遗传分化系数(GST)为0.049,固定指数(FST)为0.072,基因流(Nm)为3.21。这说明桐棉群体内基因型分布接近于平衡状态,未出现明显的杂合子过剩或不足,遗传变异主要存在于林分内,林分间不存在明显的遗传分化,群体内基因交流顺畅。同时,处于桐棉种源核心区域的4个林分遗传多样性水平显著低于核心区外围的3个林分,说明桐棉种源核心区域遭到更为严重的人为破坏。为了保障该处马尾松天然群体的正常更新及自然遗传改良能力应重视对马尾松天然林的科学管护。一方面通过遗传资源选择收集,建立大规模种质资源库;另一方面,对于桐棉种源这类分布面积大、利用价值高、目前所受破坏尚不严重的天然群体,应建立专门的自然保护区,严禁盗伐、主伐、非法采割松脂及过度采种。该研究结果对于马尾松天然种质资源的研究与保护具有重要参考价值。     

厚朴苗期性状及种源选择初步研究

2008年6～10月,对试验区种植的18个1 a生厚朴(Mqgnolia officinalis)种源的苗高、地径等形态性状进行测量及分析,研究了厚朴不同种源苗高、地径的遗传变异、生长节律及与地理、环境因子的关系.结果表明:各种源的苗高、地径差异极显著,且有显著相关性;不同种源厚朴在6～7月生长缓慢,7月后加快,9月后生长缓慢;环境因子及地理因素对厚朴种源的遗传变异有显著影响,且以地理因素为主;依据种源间苗高、地径生长性状的二维非度量多维标度排序结果,18个种源被划分为5个种源区,根据种源苗期生长优劣,初步筛选出道县、桑植、安化3个优良种源.     

利用RAPD 标记技术对白桦种源遗传变异的分析及种源区划

用随机扩增多态DNA(RAPD)分子标记方法对白桦17 个种源152 个个体进行了遗传变异的比较分析, 通过14 个随机引物扩增共检测到233 个位点, 各种源多态位点百分率差异明显, 范围在20.17%~32.19%之间, 多态位点百分率最高的是帽儿山种源和清源种源, 最低的是绰尔种源。遗传变异在种源间占43.53%, 在种源内个体间占56.47%。根据种源间的遗传距离, 构建了白桦17 个种源的遗传关系聚类图, 结果将东北地区的白桦聚为一类, 华北、西北地区的白桦聚为另一类。同时根据地理气候因子和遗传距离对白桦群体进行了种源区的划分。     

加勒比松种源苗期DNA甲基化多样性分析

为了解加勒比松(Pinus caribaea)种源的遗传多样性,利用甲基化敏感扩增多态性技术对加勒比松3个变种17个种源的DNA甲基化多样性进行了研究。结果表明,56对引物组合共扩增出425条谱带,其中多态性谱带422条,多态性百分率为99.25%。加勒比松种源幼苗半甲基化比率比全甲基化比率稍高,洪都拉斯加勒比松、古巴加勒比松和巴哈马加勒比松的DNA甲基化率分别为22.39%、22.29%和22.35%,差异不显著。加勒比松的DNA序列遗传多样性(H=0.4376)高于DNA甲基化多样性(H=0.3274),Mantel检验表明,基因组遗传变异与表观遗传变异不存在相关性(r=-0.171,P=0.16)。表观聚类与遗传聚类间存在较大差异,两种聚类分析结果均未将3个加勒比松变种分开。这表明加勒比松变种间的表观遗传变异极为丰富,能为加勒比松遗传改良提供优良种质资源。     

基于SRAP标记的紫溪山华山松种子园无性系遗传多样性分析

为明确云南楚雄市紫溪山华山松种子园内不同种源无性系间的遗传背景,该研究收集了园内6个种源的60个华山松无性系单株针叶,采用改良CTAB法提取其总DNA,并利用SRAP分子标记对其进行遗传多样性分析。结果表明:(1)从100对引物组合中共筛选出15对具有多态性的SRAP引物,经SRAP-PCR扩增后,共获得出194个位点,多态位点百分率(PPB)为85.05%,Nei's基因多样性指数(H)为0.233 7,Shannon's信息指数(I)为0.341 9,种源间的遗传分化系数(GST)为0.355 5。(2)华山松6个种源遗传多样性较高,且遗传变异主要存在于华山松种源内,种源地会泽(HZ)与巍山(WS)种源的遗传距离最近(D=0.050 1),会泽(HZ)与宜良(YL)种源的遗传距离最远(D=0.361 8)。(3)聚类分析显示将6个华山松种源一共聚为3类:会泽(HZ)和巍山(WS)种源聚为一类;楚雄(CX)、南华(NH)和宜良(YL)种源聚为一类;腾冲(TC)种源单独为一类。综合上述结果显示,紫溪山华山松种子园内无性系间的遗传分化处于较高水平,为华山松杂交育种时亲本的选配及种质资源的评价提供了分子水平的理论依据。     

利用RAPD标记分析北美鹅掌楸与鹅掌楸种间遗传多样性

利用ＲＡＰＤ标记技术对鹅掌楸属（Ｌｉｒｉｏｄｅｎｄｒｏｎ Ｌ．）２个现存种鹅掌楸（Ｌｉｒｉｏｄｅｎｄｒｏｎ ｃｈｉｎｅｎｓｅ （Ｈｅｍｓｌ．）Ｓａｒｇ）和北美鹅掌楸（Ｌｉｒｉｏｄｅｎｄｒｏｎ ｔｕｌｉｐｉｆｅｒａ ｌｉｎｎ．）的遗传多样性进行分析,结果表明：２个种都有较高的遗传多样性,但北美鹅掌楸的遗传多样性水平高于鹅掌楸;鹅掌楸的遗传变异主要来自地理种源内,而北美鹅掌楸的遗传变异主要来自地理种源     

马尾松稳定碳同位素(δ13C)的地理变异及其对水热因子的响应

利用设置在浙江省淳安县姥山林场和湖北省太子山石龙林场2个试验点的33年生马尾松种源试验林,选取不同纬度的10个代表性种源,研究其在种源间的差异、地理变异模式及对水热因子的响应.结果表明: 马尾松平均年轮δ¹³C在种源间的差异极显著,高纬度种源的平均年轮δ¹³C高于低纬度种源.马尾松年轮δ¹³C呈纬向的地理变异模式,形成了对种源原地环境的适应性.年轮δ¹³C与种源地年均温(MAT)、1月均温(T₁)、年降水量(MAP)、5—9月降水量(P_5-9)及≥10 ℃年积温(CT)均呈显著或极显著负相关,与干燥度指数(AI)呈显著正相关.淳安和太子山点马尾松年轮δ¹³C对种源地干燥度指数的响应函数可分别解释年轮δ¹³C变化的37.5%和42.5%,种源地AI是年轮δ¹³C适应性的重要环境限制因子.马尾松稳定碳同位素δ¹³C的年际变化与生长环境关系密切,湖北太子山试验点处于相对干旱的中西部地区,干燥度指数高,平均年轮δ¹³C比淳安试验点高1.8%.太子山点和淳安点的马尾松年轮δ¹³C分别对7月和8月的气温响应敏感,夏季降水量是年轮稳定碳同位素分馏的主要限制因子,而不同种源对未来气候变化的响应敏感性不同.     

马尾松种源在异质养分环境中的觅养行为差异

选择广东信宜、福建武平、广西岑溪3个不同磷效率特性的马尾松种源,构建同质和异质两种养分环境开展盆栽实验,研究马尾松搜寻利用异质分布养分的获取机制及不同种源觅养行为差异。结果表明,与同质营养环境相比,异质营养环境中马尾松种源具有较高的苗高、地径生长量、较强光合速率和干物质生产能力。研究证实了根系形态可塑性和生理可塑性在马尾松获取异质分布养分中的重要性。马尾松可通过在富养斑块中须侧根的大量增生、对N、P、K等元素的有效吸收提高其觅养能力。马尾松在拓殖富养斑块的初期主要依靠新生侧根的增加和侧根的延长,在拓殖一段时期之后则主要靠新生侧根的生成和须根数量、须根密度的增加来搜寻异质分布养分。异质养分环境中的根系具有较高的养分吸收效率主要缘由在富养斑块中对N、P、K大量的吸收。综合比较分析认为,在3个参试种源中广西岑溪和福建武平种源在异质营养环境中拓殖富养斑块和觅养能力较强,广东信宜种源拓殖和觅养能力相对较弱。     

Genetic variation of Calycophyllum spruceanum in the Peruvian Amazon Basin, revealed by amplified fragment length polymorphism (AFLP) analysis

An understanding of the level, structure and origin of genetic variation within and among populations of tropical trees is essential for devising optimum management strategies for their sustainable utilization and conservation. Here, amplified fragment length polymorphism (AFLP) analysis was used to partition genetic variation within and among nine populations of the predominantly riverine tree, Calycophyllum spruceanum , sampled across a wide geographical range along river tributaries of the Peruvian Amazon Basin. Analysis of molecular variance ( AMOVA ) employed 65 AFLP markers and revealed most variation among individuals within populations (91%), although variation among populations was highly significant ( P < 0.001). Calculation of genetic distances and nested AMOVA indicated a degree of structuring among populations based on geographical proximity, although clustering did not depend on geographical distance alone. No firm evidence was obtained for unidirectional seed dispersal by water playing an important role in determining genetic structure over the geographical range sampled. Implications of data for optimising genetic management of the species are discussed and areas for further study identified.     

Historical DNA from museum type specimens clarifies diversity of Asian leaf turtles (Cyclemys)

Species boundaries in Asian leaf turtles of the genus Cyclemys are difficult to define on the basis of morphology, primarily because many populations exhibit considerable ontogenetic variation in shell and head coloration. Two recent molecular phylogenetic hypotheses of Cyclemys species relationships, based largely on market and pet-trade samples of uncertain provenance, were highly incongruent. We used historical DNA methods to sequence fragments of the mitochondrial cytochrome  b gene from eight type specimens of Cyclemys (including one collected by Alfred Russel Wallace), and phylogenetically placed these type sequences into the context of published cytochrome  b variation. Our phylogenetic hypothesis supports the recognition of four named species ( Cyclemys atripons , Cyclemys dentata , Cyclemys oldhamii , and C. pulchristriata ), as well as a fifth species of unknown geographical provenance obtained from the Hong Kong pet trade. The type sequences show that previous molecular phylogenetic studies were hampered by misidentifications, supporting the notion that Cyclemys of unknown provenance are not reliably identified to species solely on the basis of morphology.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 94 , 131–141.     

AFLP and MS-AFLP Analysis of the Variation within Saffron Crocus (Crocus sativus L.) Germplasm

The presence and extent of genetic variation in saffron crocus are still debated, as testified by several contradictory articles providing contrasting results about the monomorphism or less of the species. Remarkably, phenotypic variations have been frequently observed in the field, such variations are usually unstable and can change from one growing season to another. Considering that gene expression can be influenced both by genetic and epigenetic changes, epigenetics could be a plausible cause of the alternative phenotypes. In order to obtain new insights into this issue, we carried out a molecular marker analysis of 112 accessions from the World Saffron and Crocus Collection. The accessions were grown for at least three years in the same open field conditions. The same samples were analysed using Amplified Fragment Length Polymorphism (AFLP) and Methyl Sensitive AFLP in order to search for variation at the genetic (DNA sequence) and epigenetic (cytosine methylation) level. While the genetic variability was low (4.23% polymorphic peaks and twelve (12) effective different genotypes), the methyl sensitive analysis showed the presence of high epigenetic variability (33.57% polymorphic peaks and twenty eight (28) different effective epigenotypes). The pattern obtained by Factorial Correspondence Analysis of AFLP and, in particular, of MS-AFLP data was consistent with the geographical provenance of the accessions. Very interestingly, by focusing on Spanish accessions, it was observed that the distribution of the accessions in the Factorial Correspondence Analysis is not random but tends to reflect the geographical origin. Two clearly defined clusters grouping accessions from the West (Toledo and Ciudad Real) and accessions from the East (Cuenca and Teruel) were clearly recognised.     

Genetic population structure of the ectomycorrhizal fungus Pisolithus microcarpus suggests high gene flow in south-eastern Australia

Pisolithus are ectomycorrhizal fungi that associate with roots of numerous plant species in natural and plantation forests worldwide. Despite the fact that Pisolithus spp. are present in plantation forests in many countries, knowledge of the genetic population structure of Pisolithus spp. remains limited. In this study, we have tested the hypothesis that a propensity for long-distance spore dispersal in Pisolithus microcarpus, along with the widespread distribution of potential eucalypt and acacia plant hosts in south-eastern Australia facilitates gene flow that limits population differentiation. Five polymorphic simple sequence repeat markers were used to investigate the population structure of P. microcarpus. Isolates were grouped according to geographical origin and isolate genotypes were analysed among the geographical populations. Pairwise F _ST estimates indicated limited genetic differentiation among the geographical populations. Analysis of molecular variance revealed that most of the genetic variation present was within geographical populations, with only 1.3% of the genetic variation among P. microcarpus geographical populations. This was particularly pronounced for four geographical populations within a ca 7,000 km² area New South Wales, which were each separated by <100 km and appeared to be genetically homogeneous. The lack of population structure is suggested to be due to a high degree of gene flow, via basidiospores, between the New South Wales geographical populations.     

不同地理种源桔梗种子性状及苗期生长分析

对来源于不同产地的43份桔梗[Platycocon grandiflorus（Jaeq．）A．DC．]种子的地理变异、种子特性及幼苗生长状况进行了分析。根据不同种源桔梗种子的特性、发芽率及幼苗的生长状况,利用聚类分析方法可将供试的桔梗种源大致分为南方和北方2个地理种源,其中北方种源的种子颗粒较大,千粒重达1．21～1．35g;南方种源的种子发芽率高（65％～71％）,种子千粒重为1．15～1．20g,幼苗生长健壮,根系较发达。此外,桔梗种子的发芽率与纬度呈明显的负相关,桔梗幼苗地上部分的生长与根茎的生长存在显著的相关性,可作为早期间苗及幼苗筛选的标准。研究结果表明,来源于安徽毫州及安徽太和的桔梗种源适合在浙江富阳地区栽培。     

基于mtCOI基因序列的中国葱斑潜蝇不同地理种群遗传多样性分析

【目的】葱斑潜蝇Liriomyza chinensis是葱蒜类蔬菜上的重要经济害虫,在我国广泛分布。本研究旨在阐析中国葱斑潜蝇的地理种群遗传分化。【方法】以中国8省12个不同地理种群的253头葱斑潜蝇为样本,测定其mtCOI基因序列;依据获得的mtCOI基因序列,利用MEGA7.0, DnaSP 6.1和Arlequin 3.5等软件对葱斑潜蝇地理种群的遗传多样性、基因流水平和遗传变异等进行分析。【结果】在253头个体的759 bp mtCOI基因片段中,获得13个单倍型,各单倍型间K2P遗传距离均小于0.02;其中单倍型Hap1为12个地理种群所共享,总发生频率高达81.82%。总群体单倍型多样性较低(H_d=0.327),核苷酸多样性(Pi)为0.00159,核苷酸平均差异数(K)为1.21011;葱斑潜蝇总群体遗传分化程度中等(F_ST=0.06971),基因交流较充分(Nm=3.33629)。分子方差分析(AMOVA)结果表明,遗传变异来源为群体内;总群体Tajima’s D检验值为显著负值;Mantel检测结果说明种群间的遗传距离与地理距离没有相关性。【结论】中国葱斑潜蝇地理种群的遗传多样性较低,基因交流较充分,遗传分化程度中等,且地理距离并不影响其遗传分化程度;葱斑潜蝇总群体在较近的历史时期未经历明显的种群扩张和种群增长。