Influence of chemical modification on enzyme inactivation kinetics and stability

Enzymes are placed in different categories depending on the effect of chemical modification on their inactivation kinetics and residual activity. This is done using a series-type mechanism involving degraded but stable enzyme states. The major distinction in the three basic categories is the effect of modification on residual activity. Each category is further sub-divided depending on the effect of modification on the values of the deactivation rate constants. The classification provides for a framework for comparison of a wide variety of enzyme deactivation data. Structure-function relations are provided wherever possible.     

Effect of shear on the inactivation kinetics of the enzyme dextransucrase

An inactivation model previously developed to characterize the rate of enzyme activity loss in unstirred solutions was extended to take into account orthokinetic interactions resulting from convective mixing. A synergistic relationship between shear rate and temperature was observed; the rate of inactivation of the enzyme dextransucrase was unaffected by the action of shear below 25 degrees C, but was increased by the shear rate at 30 degrees C. Shear rate does not appear to influence the equilibrium between native and denatured dextransucrase either directly in solution or indirectly by augmenting the turnover of the gas-liquid interface. However, a second-order plot of the inverse of relative activity (A(O)/A) versus Gt (shear rate x time) of dextransucrase at a constant temperature was linear because of the influence of shear on the coagulation of the denatured enzyme. The addition of 0.01 g L(-1) of polyethylene glycol (MW 20,000) blocked this coagulation reaction, thereby completely inhibiting the shear-induced inactivation of dextransucrase at 30 degrees C. (c) 1993 John Wiley & Sons, Inc.     

The origins of enzyme kinetics

The equation commonly called the Michaelis–Menten equation is sometimes attributed to other authors. However, although Victor Henri had derived the equation from the correct mechanism, and Adrian Brown before him had proposed the idea of enzyme saturation, it was Leonor Michaelis and Maud Menten who showed that this mechanism could also be deduced on the basis of an experimental approach that paid proper attention to pH and spontaneous changes in the product after formation in the enzyme-catalysed reaction. By using initial rates of reaction they avoided the complications due to substrate depletion, product accumulation and progressive inactivation of the enzyme that had made attempts to analyse complete time courses very difficult. Their methodology has remained the standard approach to steady-state enzyme kinetics ever since.     

Studies on cell enzyme systems; the kinetics of heat inactivation of cypridina luciferase

Solutions of the enzyme luciferase, extracted from Cypridina, were subjected at pH 6.8 to temperatures from 40–55°C. for times up to 24 hours. After the desired exposures samples were cooled rapidly to room temperature, mixed with luciferin, and the first order velocity constants (representing luciferase activity) of the resulting luminescent reactions were determined by a photo electric method. The form of the curve relating luciferase activity to time of exposure to a temperature in the above range is compound in nature. If the exposure to the high temperature is not too long, about two-thirds of the lost activity is slowly regained on standing at room temperature. The data were described by an equation which represents the following mechanism: See PDF for Equation A plot of the logarithm of the rate constant, k₁, against the reciprocal of the absolute temperature yielded an experimental activation energy for this reaction of about 57,000 calories, typical of protein denaturation processes. Log k₂ plotted against 1/T was described by either a curve or two straight lines, high activation energies resulting in either case, again indicating protein denaturation. The plot of log k₃: vs. 1/T showed no apparent dependence upon temperature, k₃ being practically constant over the range studied. This may indicate that the underlying mechanism is not actually as simple as pictured. Two other mechanisms that were also considered were discarded because of lack of experimental support. Measurements of the decrease of luciferase activity at 48°C. and at pH 6.7, pH 5.5, and pH 7.9 showed that inactivation of the enzyme at this temperature was much more rapid at pH 7.9 than at pH 6.7 and was even faster at pH 5.5. These results from the Cypridina luminescent system were compared with those of other investigators on other systems.     

Oxidative inactivation of angiotensin-converting enzyme]

Hydrogen peroxide inactivates the purified human angiotensin-converting enzyme (ACE) in vitro; the inactivating effect of H2O2 is eliminated by an addition of catalase. The lung and kidney ACE are equally sensitive to the effect of hydrogen peroxide. After addition of oxidants (H2O2 alone or H2O2 + ascorbate or H2O2 + Fe2+ mixtures) to the membranes or homogenates of the lung, the inactivation of membrane-bound ACE is far less pronounced despite the large-scale accumulation of lipid peroxidation products. The marked inactivation of ACE in the membrane fraction (up to 55% of original activity) was observed during ACE incubation with a glucose:glucose oxidase:Fe2+ mixture. Presumably the oxidative potential of H2O2 in tissues in consumed, predominantly, for the oxidation of other components of the membrane (e.g., lipids) rather than for ACE inactivation.     

Possible mechanisms of mechanical enzyme inactivation

The changes of trypsin structures during grinding have been studied. Destruction of covalent bonds inside the polypeptide chain and of disulfide bonds was discovered by ESR method. Grinding at room temperature is accompanied by hydrolysis of peptide bonds which is demonstrated by the formation of a great number of new N-terminal amino acids, determined by reaction with dansyl chloride. A change in trypsin tertiary structure resulting from grinding was shown by circular dichroism method. The analysis of the results obtained allows to conclude that the main cause of inactivation in the course of enzyme grinding are the conformational changes due to rupture and redistribution of weak bonds.     

The use of synthetic polymers for preventing enzyme thermal inactivation

Summary Linear synthetic polymers markedly increase enzyme thermal stability. The rate of deactivation of acid phosphatase in the presence of polyvinylalcohol and polyvinylpyrrolidone was measured during experiments performed in an ultrafiltration membrane reactor. Protein thermal deactivation obeys an exponential law with a rate constant largely reduced as compared with the corresponding value for the unprotected enzyme. The value of the activation energy of the enzyme denaturation in the presence of each polymer is of the same order of magnitude. Finally, their presence does not interfere with enzyme kinetics since k_m and V_max remain unchanged.     

The kinetics of enzyme systems involving activation of zymogens

A general model of zymogen activation is proposed and explicit kinetic equations for the time courses of the various species and products involved are given. These equations are valid for the whole course of the reaction and therefore for both the transient phase and the steady state. This model is sufficiently general to include mechanisms possessing one or more steps of zymogen activation besides possible steps of inhibition (reversible or irreversible) or inactivation.     

The kinetics of penicillin-V deacylation on an immobilized enzyme

An immobilized Penicillin-V-acylase (commercial name, Novozym 217) with high specificity for the phenoxyacetyl-(V)- side chain was investigated in a recycle reactor and in a batch reactor to find the enzymatic reaction rate as a function of conversion, x, substrate concentration, c(A) (0) and pH. The reaction rate depends strongly on pH, and both products, phenoxy-acetic acid and 6-APA, inhibit the reaction. Nonspecific side reactions amount to only a few per cent when c(A) (0) <150mM and pH& gt; 6.5. The effectiveness factor for commercial-size particles is found to be about 0.65, and a value of 1.3mM is obtained for the equilibrium constant, K(eq), of the deacylation reaction. A kinetic model for the deacylation process which includes the effect of pH and of the reverse (acylation) reaction is proposed. Rate data for particles of different size are fitted to the nonlinear model. Five kinetic parameters and an effective diffusivity for the immobilized enzyme particles are determined.     

The computation of hyperbolic dependences in enzyme kinetics.

A computer program aimed at analysing results following Michaelis-Menten kinetics can be used unmodified in the treatment of other kinetic results provided that the kinetic equations in these cases can be written in the form of the Michaelis-Menten equation. A list is presented of the parameters to be set instead of substrate concentration and reaction rate, and of constants replacing Km and V, if such a program is applied in analysing enzyme inhibitions, activations and pH-dependences.     

UDPglucose pyrophosphorylase from Xanthomonas spp. Characterization of the enzyme kinetics, structure and inactivation related to oligomeric dissociation

The genes encoding for UDPglucose pyrophosphorylase in two Xanthomonas spp. were cloned and overexpressed in Escherichia coli. After purification to electrophoretic homogeneity, the recombinant proteins were characterized, and both exhibited similar structural and kinetic properties. They were identified as dimeric proteins of molecular mass 60kDa, exhibiting relatively high specific activity ( approximately 80Units/mg) for UDPglucose synthesis. Both enzymes utilized UTP or TTP as substrate with similar affinity. The purified Xanthomonas enzyme was inactivated after dilution into the assay medium. Studies of crosslinking with the bifunctional lysyl reagent bisuberate suggest that inactivation occurs by enzyme dissociation to monomers. UTP effectively protects the enzyme against inactivation, from which a dissociation constant of 15microM was calculated for the interaction substrate-enzyme. The UTP binding to the enzyme would induce conformational changes in the protein, favoring the subunits interaction to form an active dimer. This view was reinforced by protein modeling of the Xanthomonas enzyme on the basis of the prokaryotic UDPglucose pyrophosphorylase crystallographic structure. The in silico approach pointed out two main critical regions in the enzyme involved in subunit-subunit interaction: the region surrounding the catalytic-substrate binding site and the C-term.     

Selective neutrality and enzyme kinetics

This article appeals to a recent theory of enzyme evolution to show that the properties, neutral or adaptive, which characterize the observed allelic variation in natural populations can be inferred from the functional parameters, substrate specificity, and reaction rate. This study delineates the following relations between activity variables, and the forces—adaptive or neutral—determining allelic variation: (1) Enzymes with broad substrate specificity: The observed polymorphism is adaptive; mutations in this class of enzymes can result in increased fitness of the organism and hence be relevant for positive selection. (2) Enzymes with absolute substrate specificity and diffusion-controlled rates: Observed allelic variation will be absolutely neutral; mutations in this class of enzymes will be either deleterious or have no effect on fitness. (3) Enzymes with absolute or group specificity and nondiffusion-controlled rates: Observed variation will be partially neutral; mutants which are selectively neutral may become advantageous under an appropriate environmental condition or different genetic background. We illustrate each of the relations between kinetic properties and evolutionary states with examples drawn from enzymes whose evolutionary dynamics have been intensively studied. Received: 12 December 1996 / Accepted: 22 April 1997