The “Domestication Syndrome” in Mammals: A Unified Explanation Based on Neural Crest Cell Behavior and Genetics

Charles Darwin, while trying to devise a general theory of heredity from the observations of animal and plant breeders, discovered that domesticated mammals possess a distinctive and unusual suite of heritable traits not seen in their wild progenitors. Some of these traits also appear in domesticated birds and fish. The origin of Darwin’s “domestication syndrome” has remained a conundrum for more than 140 years. Most explanations focus on particular traits, while neglecting others, or on the possible selective factors involved in domestication rather than the underlying developmental and genetic causes of these traits. Here, we propose that the domestication syndrome results predominantly from mild neural crest cell deficits during embryonic development. Most of the modified traits, both morphological and physiological, can be readily explained as direct consequences of such deficiencies, while other traits are explicable as indirect consequences. We first show how the hypothesis can account for the multiple, apparently unrelated traits of the syndrome and then explore its genetic dimensions and predictions, reviewing the available genetic evidence. The article concludes with a brief discussion of some genetic and developmental questions raised by the idea, along with specific predictions and experimental tests.A major gap in Charles Darwin’s theory of evolution, as presented in the first edition of The Origin of Species (Darwin 1859), was the absence of a theory of heredity. As Darwin knew, his theory of evolution required a distinct idea of how biological heredity worked, but in 1859 he was not prepared to offer one. His attempt to fill this gap came subsequently, in his massive, detailed study of inheritance, The Variation of Plants and Animals under Domestication (Darwin 1868). Written decades before there was a science of genetics, it relied primarily on the data produced by animal and plant breeders, hence on observations of domesticated animals and plants.Darwin’s encyclopedic investigation of domesticated species revealed an intriguing phenomenon. From his survey of the animal breeding work, he found that domesticated mammals in general exhibit a suite of behavioral, physiological, and morphological traits not observed in their wild forebears. Today, the full set of these characteristics is known to include: increased docility and tameness, coat color changes, reductions in tooth size, changes in craniofacial morphology, alterations in ear and tail form (e.g., floppy ears), more frequent and nonseasonal estrus cycles, alterations in adrenocorticotropic hormone levels, changed concentrations of several neurotransmitters, prolongations in juvenile behavior, and reductions in both total brain size and of particular brain regions. The consistency of this extremely diverse set of phenotypic changes in domesticated mammals presents a major puzzle, as Darwin recognized. The suite seems to reflect something about the process of domestication per se, a conclusion strengthened by the finding that domesticated birds and even fish share some components of this spectrum of traits. Because Darwin published these findings just a few years after Mendel published his work, the hereditary basis of this phenomenon constitutes one of the oldest problems in genetics.The general combination of traits in domesticated mammals is an ensemble that we will refer to as the “domestication syndrome” (DS) (adopting a term used for domesticated crop plants, e.g., Brown et al. 2008). We list its core components in Table 1List of traits modified in the “domestication syndrome” in mammals^*     

The Evolutionary Design of Error-Rates, and the Fast Fixation Enigma

Genetic and non-genetic error-rates are analyzed in parallel for a lower and a higher organism (E. coli and man, respectively). From the comparison of mutation with fixation rates, contrasting proposals are made, concerning the arrangement of error-rates in the two organisms. In E. coli, reproduction is very conservative, but genetic variability is high within populations. Most mutations are discarded by selection, yet single mutational variants of a gene have, on average, little impact on fitness. In man, the mutation rate per generation is high, the variability generated in the population is comparatively low, and most mutations are fixed by drift rather than selection. The variants of a gene are in general more deleterious than in E. coli. There is a discrepancy in the published mutation rates: the rate of mutation fixations in human populations is twice or four times higher than the individual rate of mutation production, a feature which is not consistent with current population genetics models. Two, not mutually exclusive, hypotheses may explain this fast fixation enigma: (i) Mutation rates have substantially decreased in recent human evolution and (ii) A substantial fraction of the fixed mutations were generated in a process – such as gene conversion – that violates the principle of independence of mutation events.     

The use of quantitative cytochemical analyses in rapid prenatal detection and somatic cell genetic studies of metabolic diseases

Synopsis The biochemical analysis of enzyme activities in cultured human cells has become an increasingly important tool in the (prenatal) diagnosis of inborn errors of metabolism and in fundamental studies of somatic cell genetics and metabolic interaction of normal and mutant human cells. In all these fields the use of microchemical analyses offers new possibilities in the assay of enzymes in small numbers or even single cultured cells.When cell cultivation is carried out in dishes with a thin plastic foil at the bottom, groups of a few hundred cells and single cells can be sampled after quick freezing and freeze-drying of the culture. Incubation of this material in (sub)microlitre volumes ofp-nitrophenyl or methylumbelliferyl substrates, followed by extinction or fluorescence measurements in microdroplets using a microspectrofluorometer enables lysosomal enzyme activities in the range of 10^–11–10^–14 mol/hr/cell to be detected.Application of these techniques in assays of -1,4-glucosidase and -galactosidase on groups of 100–300 freeze-dried cultured amniotic fluid cells have enabled the prenatal diagnosis of glycogenosis-II and Fabry's disease respectively within 10–12 days after amniocentesis in the 14–15th week of pregnancy. This is a considerable reduction in the time interval hitherto required, 4–6 weeks, for the prenatal diagnosis of metabolic diseases.Examples of application of enzyme assays on single cultured cells are presented for studies on the interaction between enzyme-deficient and normal cultured cells and for genetic complementation studies after hybridization of two human cell strains. By using Lowry's principle of NADP(H) cycling, glucose-6-phosphate dehydrogenase (G-6-PD) activity could be reliably measured in single binuclear hybrid cells after fusion of normal and G-6-PD deficient human cell strains. With the same technique we were also able to detect two cell populations (normal and G-6-PD-deficient) within one culture of a heterozygous carrier for G-6-PD deficiency without the need of elaborate cell cloning techniques.Finally, a microfluorometric assay procedure was developed to enable certain lysosomal enzyme activities to be measured in single (hybrid) human cells. An example of this application is presented for -galactosidase activity measurements in single cells from a mixed culture of normal fibroblasts and cells from a patient with GM1-gangliosidosis (-galactosidase-deficient). In none of our experiments was any evidence obtained for the metabolic correction of enzyme-deficient cells by the uptake of enzyme from normal cells.     

Cloning and characterization of a human cDNA ACAD10 mapped to chromosome 12q24.1

Mitochondrial fatty acid -oxidation is an important energy resource for many mammal tissues. Acyl-CoA dehydrogenases (ACADs) are a family of flavoproteins that are involved in the -oxidation of the fatty acyl-CoA derivatives. Deficiency of these ACADs can cause metabolic disorders including muscle fatigue, hypoglycaemia, hepatic lipidosis and so on. By large scale sequencing, we identified a cDNA sequence of 3960 base pairs with a typical acyl-CoA dehydrogenase function domain. RT-PCR result shows that it is widely expressed in human tissues, especially high in liver, kidney, pancreas and spleen. It is hypothesized that this is a novel member of ACADs family. Abbreviations: ACADs – acyl-CoA dehydrogenases, FAD – flavinadenine dinucleotide, SCAD – short-chain acyl-CoA dehydrogenase,MCAD – medium-chain acyl-CoA dehydrogenase, LCAD – long-chain acyl-CoAdehydrogenase, VLCAD – very long- chain acyl-CoA dehydrogenase, IVD –isocalery-CoA dehydrogenase, SBCAD – short/branched chain acyl-CoAdehydrogenase, GCD – glutaryl- CoA dehydrogenase, ETF – electron transferflavoprotein, ACAD8 – acyl-CoA dehydrogenase 8, ACAD9 – acyl-CoAdehydrogenase 9, ACAD10 – acyl-CoA dehydrogenase 10.     

Dissection of a malting quality QTL region on chromosome 1 (7H) of barley

Malting and brewing are major uses of barley (Hordeum vulgare L.) worldwide, utilizing 30–40% of the crop each year. A set of complex traits determines the quality of malted barley and its subsequent use for beer. Molecular genetics technology has increased our understanding of genetic control of the many malting and brewing quality traits, most of which are quantitatively inherited. The objective of this study was to further dissect and evaluate a known major malting quality quantitative trait locus (QTL) region of about 28 cM on chromosome 1 (7H). Molecular marker-assisted backcrossing was used to develop 39 isolines originating from a Steptoe / Morex cross. Morex, a 6–row malting type, was the donor parent and Steptoe, a 6–row feed type, was the recurrent parent. The isolines and parents were grown in four environments, and the grain was micro-malted and analyzed for malting quality traits. The effect of each Morex chromosome segment in the QTL target region was determined by composite interval mapping (CIM) and confirmed and refined by multiple interval mapping (MIM). One QTL was resolved for malt extract content, and two QTLs each were resolved for -amylase activity, diastatic power, and malt -glucan content. One additional putative malt extract QTL was detected at the plus border of the target region by CIM, but not confirmed by MIM. All QTLs were resolved to intervals of 2.0 to 6.4 cM by CIM, and to intervals of 2.0 cM or less by MIM. These results should facilitate marker-assisted selection in breeding improved malting barley cultivars.     

Cytospectrophotometric study of the kinetics of histochemical reaction of GABA-transaminase in cryostat sections of rat cerebellar cortex

Summary A modification of the histochemical method for demonstration of GABA-transaminase is proposed. Substrate and cofactor concentrations are chosen on the basis of a kinetic investigation in cryostat sections of the rat cerebellar cortex. Enzymatic reactions were measured by quantitative microspectrophotometry. Michaelis constants for -oxoglutarate in the Purkinje cell layer and granular layer (K_m 1.7×10^–3 M) and white matter (K_m 3,8×10^–3 M) are found. It is shown that -oxoglutarate in concentrations higher than 5.2×10^–3 M (1 mg/ml) suppresses the reaction in sections by competitive inhibition. The advisability of addition of malonate, PMS and cyanide to the incubation medium is confirmed. It is suggested that there are some isoenzymes of GABA-transaminase with predominant localization either in neurons or glia.     

Analysis of exposed regions on the main extracellular domain of mouse acetylcholine receptor α subunit in live muscle cells by binding profiles of antipeptide antibodies

To study the structural organization of the main extracellular domain of the nicotinic acetylcholine receptor (AChR) subunit in live muscle cells, we examined the native membrane-bound receptors in cultured mouse skeletal muscle cells for their ability to bind a panel of antibodies against uniform-sized overlapping synthetic peptides which collectively represent this entire domain. The binding profile indicated that the regions 23–49,78–126,146–174, and182–210 are accessible to binding with antibody. Residues23–49,78–126, and194–210 contain binding regions for-neurotoxin and some myasthenia gravis autoantibodies. A comparison of this binding profile with the profile obtained for membrane-boundTorpedo californica AChR in isolated membrane fractions showed some similarities as well as significant differences between the subunit organization in the isolated membrane fraction and that in the membrane of live muscle cells. Regions89–104 and158–174, which are exposed in the isolated membrane fraction, are also exposed in the live cell. On the other hand, regions23–49, and182–210, which are exposed in the live cell, are not accessible in the isolated membrane and, furthermore, the region1–16, which has marginal accessibility in the cell, becomes highly accessible in the membrane isolates. The exposed regions defined by this study may be the primary targets for the initial autoimmune attack on the receptors in experimental autoimmune myasthenia gravis.     

Coastal upwelling, primary production and mussel growth in the Rías Baixas of Galicia

The Rías Baixas are four flooded tectonic valleys located on the northwest Iberian Peninsula that support a mussel production of about 250 × 10⁶ kg y^–1 from 3337 mussel rafts. Mussel production in this region is the highest in Europe and one of the most intensive in the world, giving employment to 9000 people directly and 20000 indirectly. The causes of this high mussel production are discussed through the analysis of published and some unpublished information. The interaction between coastal upwelling and the circulation patterns in the Rías, which channel the 3-dimensional variability of the open ocean into a 2-dimensional system, promotes a massive response in the productivity of phytoplankton populations inside the Rías, even during weak upwelling events along the coast. Coastal upwelling in the area typically occurs between March–April and September–October. The mean value of gross primary production during the whole upwelling season is 1.4 g C m^–2 d^–1, although high sporadic values of 4 g C m^–2 d^–1 may occur during upwelling relaxation events, when phytoplankton export to the coastal shelf is restricted. Mussel growth occurs mainly during the upwelling season. It is estimated that mussel harvest extracts 10% of the primary production. The phytoplankton response to upwelling provides food of high quality (f 0.5) that determines high absorption efficiency (0.6), whereas the characteristics of the Rías maintains the seston concentration at levels (0.5 – 1.3 mg TPM l^–1 and <5 mg Chl a m^–3) below the threshold of pseudo-faeces production. The physiological behaviour of mussels indicates that the high yield of mussel culture in the Rías of Galicia is a consequence of the particular characteristics of the seston.     

α2-Interferon- and oligoadenylate-induced morphological differentiation and modulation of the ion channels in neuroblastoma cells

The experiments were carried out on the IMR-32 human neuroblastoma and NIE-115 murine neuroblastoma cultured cells. Peculiarities of the ion channel expression and their correlation with the main morphological parameters characterizing neuronal differentiation were studied under conditions of incubation of the cells with 2-interferon and 2,5-oligoadenylate, 2–5A. Twenty-four hours after addition of 1000 U act./ml interferon to the culture medium, a 56% increase in the mean projective surface of the IMR-32 cells was observed, and after a nine-day-long exposition this increase was 132%, as compared with the control. Mean total length of the cellular protrusions nearly doubled after nine-day-long incubation. Morphological and electrophysiological properties of the N1E-115 murine neuroblastoma cells showed practically no changes after incubation with human 2-interferon. Cultivation of the IMR-32 human neuroblastoma cells in the presence of 2–5A evoked insignificant changes in their morphological parameters. By contrast, the mean total length of neurites of the N1E-115 neuroblastoma protrusion-supplied cells increased more than a factor of five after eight-day-long incubation with 2–5A in a 1.0 µM concentration, and at a 0.01 µM 2–5A concentration this increase was about fourfold. At the same time, the projective surface exhibited no significant changes either in the neurite-supplied or the neurite-free cellular subpopulations. Twenty-four hours after the incubation with human 2-interferon had been begun, the density of sodium current in the IMR-32 human neuroblastoma cells increased by 250% compared with the control. A similar effect was observed after the addition of 2–5A to the medium: the density of sodium current approximately doubled. Cultivation of the neurite-supplied N1E-115 murine neuroblastoma cells was followed by a gradual increase in the density of fast sodium current both in control and 2–5A-influenced samples, but in the latter case this increase was significantly faster. In the neurite-free cells, the density of sodium current was 27% higher after their 24-h-long incubation with 2–5A, as compared with the control values (11.05±0.9 and 8.7±0.9 pA/pF, respectively). Longer incubation resulted in a sharp decrease in the density of potassium current. The results of our study are in agreement with the data about species-related individuality of 2-interferon and different intensity of its effects on the cells passing different stages of cellular differentiation.Neirofiziologiya/Neurophysiology, Vol. 27, No. 3, pp. 199–207, May–June, 1995.     

Chloride conductance of the Amphiuma red cell membrane

Summary Like most other red cells, the giant erythrocytes ofAmphiuma means possess a system for rapid exchange of chloride across the membrane. Also, there are indications that the net transport of chloride in these cells is slow. The size ofAmphiuma erythrocytes allows direct measurements of membrane potential with microelectrodes. The present work exploits the possibility that such measurements can be used to give a quantitative estimate of the chloride conductance (G _Cl) of the Amphiuma red cell membrane. The membrane potential was measured as a function of extracellular chloride concentration (5–120mM), using an impermeant anion (Para-amino-hippurate) as a substitute. Furthermore, the effect of different pH values (6.0–7.2) was studied. For each extracellular chloride concentration the membrane potential was determined at a pH at which hydroxyl, hydrogen, and bicarbonate ions were in electrochemical equilibrium. From these membrane potentials and the corresponding chloride concentrations in the medium (at constant intracellular ion concentrations), theG _Cl of the membrane was calculated to be 3.9×10^–7 {ie27-1} cm^–2. This value is some six orders of magnitude smaller than that calculated from the rate of tracer exchange under equilibrium conditions. The experimental strategy used gives the value for a partial transference number which takes into account only ions which arenot in electrochemical equilibrium. Whereas this approach gives a value forG _Cl, it does not permit calculation of the overall membrane conductance. From the calculated value ofG _Cl it is possible to estimate that the maximal value of the combined conductances of hydroxyl (or proton) and bicarbonate ions is 0.6×10^–7 {ie27-2} cm^–2. The large discrepancy between the rate of exchange of chloride and its conductance is in agreement with measurements on human and sheep red cells employing the ionophore valinomycin to increase the potassium conductance of the membrane. The results in the present study were, however, obtained without valinomycin and an accompanying assumption of a constant field in the membrane. Therefore, the present measurements give independent support to the above mentioned conclusions.     

The Synthesis Paradigm in Genetics

Experimental genetics with model organisms and mathematically explicit genetic theory are generally considered to be the major paradigms by which progress in genetics is achieved. Here I argue that this view is incomplete and that pivotal advances in genetics—and other fields of biology—are also made by synthesizing disparate threads of extant information rather than generating new information from experiments or formal theory. Because of the explosive expansion of information in numerous “-omics” data banks, and the fragmentation of genetics into numerous subdisciplines, the importance of the synthesis paradigm will likely expand with time.MAJOR advances in the field of genetics have been developed on a foundation supported by three major pillars (i.e., paradigms, by which I mean a framework of basic assumptions, logical approaches, and methodologies), two of which are widely known and appreciated while the third is rarely even acknowledged. The first major paradigm is experimental genetics, especially in the context of model organisms. The work of Thomas H. Morgan and his colleagues at Cal Tech during the early 20th century is a classic example of this approach. A succession of elegant experimental studies by this research team led to the development of the Drosophila melanogaster model system, which Morgan et al. (1915) used to construct the first genomic map that included genes assigned to precise locations on all of an organism’s chromosomes. Their accumulated experimental results also contributed importantly to their book, The Mechanism of Mendelian Heredity (1915), which many consider to be the catalyst that launched the modern era of genetics.The second paradigm is mathematically explicit genetic theory. The succession of genetical theory papers published throughout the first half of the 20th century by Ronald A. Fisher is a classic example of this approach. Fisher’s work reconciled a fundamental rift in the early history of modern genetics—i.e., the genetic approaches of the Mendelians (advocated by William Bateson and Hugo de Vries) vs. the Galtonians (also known as the biometricians, represented in particular by Karl Pearson and Walter F. Weldon)—by showing that Mendelian particulate inheritance could be unified with the quantitative genetics used to analyze continuously varying traits such as height and weight (Fisher 1918). Although Darwin developed the basic framework of evolution, it was Fisher—and contemporary theoreticians Sewall Wright and J. B. S. Haldane—who integrated this qualitative idea into a quantitatively explicit genetic theory that led to the modern synthesis of evolution and launched the field of evolutionary genetics (also known as population genetics and summarized in Fisher’s now classic book, The Genetical Theory of Natural Selection, first published in 1930). Of course, some theory in genetics is not mathematically explicit, such as the “chromosomal theory of inheritance” or the “central dogma.” But this form of theory usually represents the culmination of studies using the experimental genetics paradigm rather than a unique approach to genetics.Most major advances in genetics have been achieved via one, the other, or a combination of these experimental and theoretical paradigms. But there is a well-known exception: Watson and Crick’s discovery of the structure of DNA (Watson and Crick 1953a,b, ∼11,000 combined citations—throughout, numbers of citations are taken from Google Scholar—, and arguably the pivotal publications that launched the modern field of molecular genetics). Watson and Crick used no mathematical genetic theory, nor did they do any critical experiments; instead, they integrated many threads of established information (some unpublished) to deduce the chemical structure of the hereditary material, i.e., the DNA double helix and how this structure could explain gene replication. Although later experiments, such as those of Meselson and Stahl (1958) on DNA replication, would ultimately confirm the deduced structure and replication of DNA that was proposed by Watson and Crick, the pivotal publications of these researchers used neither the experimental nor the theory paradigms of genetics. Their approach exemplifies what I will call the “synthesis paradigm.” Watson and Crick’s work demonstrates that there is actually a trichotomy of approaches—the experimental, theoretical-mathematical, and theoretical-synthetic approaches—that combine like interwoven, reinforcing strands in a cord of historical advances in genetics.In the next few sections I describe other instances in which the synthesis paradigm has been of critical importance in the field of genetics. This set of examples is meant to be illustrative and by no means exhaustive. Next I illustrate how the synthesis paradigm has been of critical importance in other fields of biology. Finally, I describe how a fuller appreciation of the synthesis paradigm can influence the training of the next cohort of geneticists and the career trajectory of current geneticists.     

Butterfly Communities of Urban Forest Fragments in Campinas, São Paulo, Brazil: Structure, Instability, Environmental Correlates, and Conservation

A comparative study of butterfly communities in 15 urban/suburban remnants of tropical semideciduous forest in Campinas (São Paulo state, SE Brazil; 24°S, 47°W), with areas from 1.0 to 252ha and widely varying histories and environments, shows that the most significant factors, besides area and sampling time, distinguishing the sites and influencing their diversity (80–702 species) and composition are connectivity, permanent water, vegetation, flowers, and human impact (negative, including pollution). The diversified Nymphalidae butterflies (38–213 species) and especially two fermented-bait-attracted groups (Satyrinae, 2–30 species, and Biblidini, 9–44 species), are among the more useful indicators of the quality and diversity of the environments in these fragments. Effective conservation of butterfly communities in tropical cities may be achieved by maintenance of arboreal green corridors along streets and watercourses between moderately large (>10ha) humid areas, not near to the most built-up or polluted city centre(s), and the inclusion within these areas of ponds or streams, diversified native forest, and open vegetation including abundant nectar-rich flowers.     

Enteromorpha as a monitor of heavy metals in estuaries

An account is given of the use of Enteromorpha to monitor zinc, cadmium, mercury and lead pollution in six estuaries and the British North Sea coast. The ranges for each element were: Zn, 19–437 µg g^–1; µg g^–1 Cd, 0.07–4.8 µg g^–1; Hg, 0.02–0.23 µg g^–1. It is suggested that tissue analysis of Enteromorpha is one of the most useful biological techniques available in estuaries for pin-pointing aqueous (as opposed to sediment) metal contamination, and also for providing data suitable for world-wide comparisons. Provisional values are given for concentrations corresponding to moderate and high pollution.Deceased     

Enhancing effects of food components on the production of interferon β from animal cells suppressed by stress hormones

In today's 'modern' society, no one can escape from the stresses of daily life. Stress stimulates the secretion of stress hormones (e.g. cortisol or noradrenaline) which generally suppress the immune response system, thus rendering the body vulnerable to infectious diseases and cancer. Therefore finding anti-stress food components, which diminish and/or inhibit the stress related suppression of the immune response system would be helpful in maintaining and promoting the health of the human population. Here we established a screening system for anti-stress substances using the cultured human cell line MG-63. The production of interferon- (IFN-) by MG-63 cells super-induced by Poly (I): Poly (C) was shown to decrease in a dose dependent manner upon the addition of 0.01–10 g/ml of cortisol or noradrenaline (NA). 1,2–Diacylglycerol (DG) was demonstrated to abrogate this suppression. Lipid from the fermented milk, kefir, also inhibited the influence of cortisol. Kefiran, a polysaccharide secreted from L. kafiranofasiens GKL-28 diminished the cortisol or NA influenced IFN- production. But phosphatidylcholine had no significant effect in this system. These results suggest that DG, lipids from kefir and kefiran may be equated as anti-stress food component.Abbreviations DG – diacylglycerol; IFN- – interferon-; NA – noradrenaline; PC – phosphatidylcholine; Poly (I):Poly (C) – polyinosinic polycytidylic acid.     

Apoplastic expression of the xylanase and β(1–3, 1–4) glucanase domains of the xyn D gene from Ruminococcus flavefaciens leads to functional polypeptides in transgenic tobacco plants

We are investigating the possibilities of transgenic plants as bioreactors for the production of industrial enzymes using cell wall-hydrolysing enzymes as first examples. Within the frame work of this work two distinct domains of the xynD gene from Ruminococcus flavefaciens encoding a xylanase (XYLD-A) and a (1–3, 1–4)glucanase (XYLD-C) were separately cloned into a plant expression vector which would target the proteins into the apoplast. Transgenic tobacco plants were obtained expressing xylan-hydrolysing as well as lichenan-hydrolysing activities. Despite similar steady-state levels of the respective mRNAs xylan hydrolysis rates were between 40 and 170 mol min–1 m^–2 leaf area depending on the transgenic plant while (1–3, 1–4)glucan degradation was much more effective ranging between 200 and 2000 mol min^–1 m^–2. The high activity levels of the XYLD-C expressing plants were reflected on the protein level. XYLD-C accumulated in the intercellular space and was one of the most prominent bands in protein gels. Despite their apoplastic location as confirmed by activity measurements using intercellular fluids the transgenic plants had not undergone any phenotypic alteration.     

Genetic structure of the LXS panel of recombinant inbred mouse strains: a powerful resource for complex trait analysis

The set of LXS recombinant inbred (RI) strains is a new and exceptionally large mapping panel that is suitable for the analysis of complex traits with comparatively high power. This panel consists of 77 strains—more than twice the size of other RI sets— and will typically provide sufficient statistical power (=0.8) to map quantitative trait loci (QTLs) that account for 25% of genetic variance with a genomewide p < 0.05. To characterize the genetic architecture of this new set of RI strains, we genotyped 330 MIT microsatellite markers distributed on all autosomes and the X Chromosome and assembled error-checked meiotic recombination maps that have an average F₂-adjusted marker spacing of 4 cM. The LXS panel has a genetic structure consistent with random segregation and subsequent fixation of alleles, the expected 3–4 × map expansion, a low level of nonsyntenic association among loci, and complete independence among all 77 strains. Although the parental inbred strains—Inbred Long-Sleep (ILS) and Inbred Short-Sleep (ISS)—were derived originally by selection from an 8-way heterogeneous stock selected for differential sensitivity to sedative effects of ethanol, the LXS panel is also segregating for many other traits. Thus, the LXS panel provides a powerful new resource for mapping complex traits across many systems and disciplines and should prove to be of great utility in modeling the genetics of complex diseases in human populations.(Robert W. Williams and Beth Bennett)These authors contributed equally to this work.     

Selective extraction by 1-butanol of surface glycoprotein antigens from human melanoma cells

Summary The butanol extraction method has previously been used to achieve selective release of tumor-specific transplantation antigens from mouse sarcoma cells. In this study we investigated the feasibility of this method for extracting four surface glycoprotein antigens (87K, 95–150K, HLA-DR, and HLA-A,B,C) from cultured human melanoma cells. Of the four antigens examined, only 95–150K and HLA-DR antigens could readily be detected in material extracted by 2%, 3%, or 5% butanol. The 3% butanol was found to be most effective in releasing these two antigens. Treatment of melanoma cells with 3% butanol did not decrease the viability of extracted cells as judged by either Trypan Blue dye exclusion or plating efficiency. Thus the noncytolytic butanol extraction method offers a promising approach to the isolation of certain glycoproteins such as 95–150K and HLA-DR from viable human melanoma cells for further purification and structural analysis.     

Cometary supply of terrestrial organics: Lessons from the K/T and the present epoch

The time-scales of import with respect to the physical survival of planet-crossing bodies (asteroids, comets, meteoroids, dust) in the inner solar system are considered, and characteristic times for different masses reviewed. These physical lifetimes range from 10³–10⁵ yr for dust (masses 10^–12–10^–6 g), and 10⁵–10⁶ yr for small meteoroids (masses 10^–6–1 g), to 10⁷–10⁸ yr for larger bodies; bodies with aphelion distance 4 AU may have dynamical lifetimes lower than these figures due to ejection from the solar system by Jupiter. Values of terrestrial impact velocities and probabilities are given for characteristic orbits of long- and short-period comets, Earth-crossing asteroids, and near-Earth dust. Zodiacal dust particles, which are predominantly in near-circular, low-inclination orbits, have sufficiently low arrival velocities ( 20 km sec^–1) at the Earth to make organic survival plausible. Alternatively larger objects with short periods, perihelia near 1 AU, and i20°, will also impact at < 20 km sec^–1, but their impact probabilities are smaller. This argues for organic delivery predominantly from dust rather than directly through meteoroids, asteroids or comets. Such dust may have delivered the amino acids deposited over at most 10⁵ yr at the K/T boundary: this is also the appropriate time-scale for the hierarchical disintegration of a giant comet and its daughter products, and the accumulation by the Earth of the dust produced, but is too short for deposition by discrete large bodies produced in the disintegration of a large comet. This supports the conjecture that some organics arrived in the first 10⁹ yr of the planet's history as constituents of cometary dust gently decelerated in the atmosphere, allowing survival to the surface.     

Submerged reefs and terraces on the shelf edge of the Great Barrier Reef,Australia

The morphology and distribution of seabed features on the shelf edge and upper slope adjacent to the Great Barrier Reef, Australia, has been examined using shallow seismic profiling, side-scan sonar and precision echo sounding data, supplemented by submersible investigations. The data reveal a submerged barrier reef system at different locations between 15° 45 S and 21° 00 S. At two locations, an extensive offshore platform rising above the 50 m isobath and extending for over 20 km parallel to the shelf edge is backed by a relict lagoon at an average depth of 75 m. In addition, outer shelf and upper slope terraces are found at many depths; however, only some occur consistently throughout the region while most others occur only locally. Frequency distributions indicate the greatest occurrence of features at depths of 44–46, 60–66, 72–78, 80–84, 102–106 and 146–148 m. Caution should be exercised when interpreting these features with respect to specific lower sea level stands.