Sex determination of prehistoric central California skeletal remains using discriminant analysis of the femur and humerus

A large sample (n = 370) of Central California prehistoric skeletal remains was analyzed for sexual dimorphism of long bones using nine femoral and nine humeral dimensions. Sex of all individuals was assessed using traits of the os pubis. Discriminant analysis was done separately for the robust Early Horizon sample and the Middle/Late Horizon sample. Use of multiple variables did not produce appreciably better results over the use of several of the best variables, analyzed singly. Attention is focused on measurements of maximum diameter femoral head, femoral bicondylar width, and diameter of the humeral head (transverse or vertical). These variables produce excellent separation of the sexes with about 90% accuracy for the Middle/Late Horizon sample. They have been overlooked in the recent literature in which the relative values of length versus midshaft dimensions are debated. The measurements found to be superior in this study are taken at the ends of the bones where durability of these regions is indicated by large sample sizes found in this study. We suggest workers redirect their focus from the midshaft to the ends of the long bones. The discriminant analyses presented here have greater accuracy than most claims for either long bone or cranial sex determination. These standards, based on two samples with differing robusticity, may have applicability for workers in other areas who lack large skeletal samples.     

江西晚古新世南方有蹄目一新属及其有关问题讨论

本文主要记述了南方有蹄目北柱兽科一新属新种——南方沟柱兽 (Bothriostylops notios gen. et sp. nov.).化石发现于江西池江盆地晚古新世池江组.新属牙齿形态与其他已记述的北柱兽科种类均有一定的差别,但与稀少亚洲柱兽 (Asiostylops spanios) 和原"中华柱兽"进步种 ("Sinostylops" progressus) 在系统关系上比较密切.本文初步讨论了"中华柱兽"属中有关种的分类和归属问题.     

Transverse--Harris--lines in a skeletal population from the 1711 Danish plague site

This study examines the occurrence and distribution of transverse lines in skeletal remains from the Copenhagen site, a plague cemetery dated 1711 AD. A relatively low frequency for evidence of line formation was observed in the individuals comprising the total sample and no transverse lines were present in the subadult category. This paper addresses the pattern of transverse line occurrence and cohort-specific distribution in a plague sample in light of the multiple factors influencing line formation and resorption and discusses the significance of transverse lines as measures of non-specific acute stress in archaeologically derived populations.     

Dental health in Northern Chile's Atacama oases: evaluating the Middle Horizon (AD 500-1000) impact on local diet

As one of the few areas apt for horticulture in Northern Chile's arid landscape, the prehistory of the Atacama oases is deeply enmeshed with that of the inter‐regional networks that promoted societal development in the south central Andes. During the Middle Horizon (AD 500–1000), local populations experienced a cultural apex associated with a substantial increase in inter‐regional interaction, population density, and quantity and quality of mortuary assemblages. Here, we test if this cultural peak affected dietary practices equally among the distinct local groups of this period. We examine caries prevalence and the degree of occlusal wear in four series recovered from three cemeteries. Our results show a reduction in the prevalence of caries for males among an elite subsample from Solcor 3 and the later Coyo 3 cemeteries. Dental wear tends to increase over time with the Late Middle Horizon/Late Intermediate Period cemetery of Quitor 6 showing a higher average degree of wear. When considered in concert with archaeological information, we concluded that the Middle Horizon was marked by dietary variability wherein some populations were able to obtain better access to protein sources (e.g., camelid meat). Not all members of Atacameño society benefited from this, as we note that this dietary change only affected men. Our results suggest that the benefits brought to the San Pedro oases during the Middle Horizon were not equally distributed among local groups and that social status, relationship to the Tiwanaku polity, and interment in particular cemeteries affected dietary composition. Am J Phys Anthropol, 2012. © 2012 Wiley Periodicals, Inc.     

Evidence for Positive Selection in the Superoxide Dismutase (Sod) Region of Drosophila Melanogaster

DNA sequence variation in a 1410-bp region including the Cu,Zn Sod locus was examined in 41 homozygous lines of Drosophila melanogaster. Fourteen lines were from Barcelona, Spain, 25 were from California populations and the other two were from laboratory stocks. Two common electromorphs, SOD(S) and SOD(F), are segregating in the populations. Our sample of 41 lines included 19 Sod(S) and 22 Sod(F) alleles (henceforward referred to as Slow and Fast alleles). All 19 Slow alleles were identical in sequence. Of the 22 Fast alleles sequenced, nine were identical in sequence and are referred to as the Fast A haplotypes. The Slow allele sequence differed from the Fast A haplotype at a single nucleotide site, the site that accounts for the amino acid difference between SOD(S) and SOD(F). There were nine other haplotypes among the remaining 13 Fast alleles sequenced. The overall level of nucleotide diversity (π) in this sample is not greatly different than that found at other loci in D. melanogaster. It is concluded that the Slow/Fast polymorphism is a recently arisen polymorphism, not an old balanced polymorphism. The large group of nearly identical haplotypes suggests that a recent mutation, at the Sod locus or tightly linked to it, has increased rapidly in frequency to around 50%, both in California and Spain. The application of a new statistical test demonstrates that the occurrence of such large numbers of haplotypes with so little variation among them is very unlikely under the usual equilibrium neutral model. We suggest that the high frequency of some haplotypes is due to natural selection at the Sod locus or at a tightly linked locus.     

Female frequencies and fitness components between sex phenotypes among gynodioecious populations of the colonizing species Trifolium hirtum All. in California

Summary Male sterility has been recently discovered in Californian populations of rose clover (Trifolium hirtum). This study describes the frequency distribution of male sterility in Turkish and Californian populations, and compares fitness components of hermaphrodites and females. As male-steriles were found in Turkey, it is likely that they were introduced to California during the 1940's with the original material derived from Turkey. The spread of male-sterile genotypes in California has given rise to an asymmetrical frequency distribution of male sterility with positive skewness. The frequency of females has not exceeded fifty percent and it appears to be temporally stable in most of the Californian populations. The hypothesis that female frequencies and fitness differences between phenotypes are correlated was tested by comparing sex phenotypes in seven populations with contrasting levels of male sterility. The analysis of those populations showed no evidence for such a correlation as no significant differences were found between sex phenotypes for fecundity and seed germination. The hypothesis that females are maintained due to fitness differences in the progeny of hermaphrodites and females was experimentally tested in the population with maximum frequency of male-steriles. The results showed no significant differences in the demographic performance of the progenies of hermaphrodites and females. The present results are discussed in terms of the possible mechanism of maintenance of gynodioecy in rose clover.     

广西石炭兽科新材料

本文记述了产自广西南宁盆地中部长岭坡(村)竹排冲岸边的石炭兽一新种:长岭石炭兽(Anthracotherium changlingensis sp. nov.)这是我国目前发现的体型最大的石炭兽。通过对化石的记述和对比,证明我国有Anthracotherium这一属的存在,并确定了南宁盆地邕宁组上段(即上含煤段)的地质时代为晚渐新世。文中还记述了百色盆地发现的两件石炭兽牙齿化石。     

Potential role of ignition management in reducing unplanned burning in Arnhem Land,Australia

Fire management attempts to coerce fire into a desired regime using three primary strategies: prescribed burning, fire suppression and ignition management. The West Arnhem Land Fire Abatement project (WALFA), where prescribed Early Dry Season burning is used to reduce unplanned Late Dry Season burning, is heralded as model for prescribed burning. However, a previous analysis found that Late Dry Season area burnt in WALFA had been reduced further than would be expected based purely on the Early Dry Season treatment area. This study investigated whether treatment has reduced the number and size of unplanned fires. Daily burnt area mapping from MODIS satellite sensors was used to identify individual fires to compare fire activity before and after management was introduced in WALFA (2005) and in a control region in East Arnhem Land. Late Dry Season area burnt reduced after treatment in WALFA but also in the control region. The number of fires in August–October increased after treatment. There is a period from early August until late September when human ignitions can cause huge fires. Late Dry Season area burnt was strongly influenced by the size of the largest single fire and only weakly by the number of ignitions. Early Dry Season area burnt had modest effects on both the number and maximum size of Late Dry Season fires. Eliminating the largest fire in each 1600 km² sample block would have halved the total Late Dry Season area burnt. A similar reduction could be obtained from a 14% annual treatment with Early Dry Season fire, but this may not reduce the overall area burnt. If overall fire frequency is the main threat to biodiversity in the savannas, then the best solution will be to prevent the small subset of fires that have the potential to become very large.     

Corrélation des successions de l'Albien par les ammonites entre la Province Nord-Pacifique et les Provinces européenne et arctique du Domaine boréal : zonation, eustatisme et paléobiogéographie

The vertical distribution of Albian ammonites of the North Pacific Province is described on the basis of several sections located in Northern California. Nine Albian ammonite assemblages are identified, compared to the 4 previously described by Murphy in 1956. Owing to several gaps of observation possibly more assemblages could exist. In the North California Albian history, the first results show a succession of confinement periods - with numerous endemic faunas - followed by periods of open communications with other faunal provinces. As an example, the base of the Middle Albian is marked by exotic ammonites coming from the Tethyan realm (Oxytropidoceras, Lyelliceras) and from the Arctic Province of the Boreal realm (Gastroplites, Pseudopulchellia). These ammonites - except Oxytropidoceras - were not known in that area and are described relatively to their palaeobiogeographical interest. Although rare these migrant faunas give valuable elements to correlate these various provinces. Planktonic foraminifera confirm the existence of open sea communications during the uppermost Albian.With such faunal links, a comparison is proposed between the Albian ammonite zonation of Northern California and the standard and phyletic ones of Europe. This attempt suggests that the major connections between the three faunal provinces are established at second order peak transgressions in the Early and Middle Albian, and during the sea-level high of the Late Albian transgressive period. So, it seems that the vertical distribution of Albian non-endemic ammonites of North California and Europe is largely controlled by global eustatic events. Two palaeobiogeographic maps for Early and Middle Albian and one map for the late Late Albian show the migration outer of these exotic ammonites.     

Genetic variation of apolipoproteins in North Indians

Genetic variation at three apolipoprotein loci (APOA4, APOH, and APOE) has been examined in nine endogamous populations of Punjab, North India. The overall pattern of allele frequency variation at different loci is compatible with that of European populations, but observed microvariation differentiates the populations according to their position in the Indian caste structure. The most common allele at the APOA4 locus was APOA4*1 with a narrow frequency range (89%-92%). APOH*2 allele frequency was highest in these populations (0.852-0.914). APOE*E4 allele frequency was relatively low (6%-10%) in the North Indian populations compared to its frequency in many European populations. The anthropological usage of these polymorphisms was evaluated using multivariate analyses. Genetic distance analysis and principal correspondence analysis showed that the North Indian populations are closest to Europeans, followed by Chinese and African populations. Overall, this study highlights the usefulness of apolipoproteins as genetic markers for clinical, population, and anthropological studies.     

Immunoglobulin (GM and KM) allotypes in the Sikh population of India

The populations of India are genetically diverse, both within and between geographic regions; immunoglobulin (GM) allotypes provide important information on genetic differences between populations, since the frequencies of combinations of allotypes (termed "haplotypes") vary dramatically among ethnic groups. As part of a project to assess genetic diversity among defined Indian populations, we have examined eight GM allotypes in a sample of 101 unrelated Sikhs who have migrated to Toronto, Canada: Glm(1, 2, 3, 17) and G3m (5, 15, 16, 21). Sikhs are a religious group that arose in the Punjab about 1500 A.D.; most of the original converts are believed to have been middle to upper-middle caste Hindus. Gm allotyping showed that six Gm haplotypes occurred at polymorphic frequencies (greater than 0.01) in Sikhs: Gm3;5, Gm1,17;21, Gm1,2,17;21, Gm1,17;5, Gm1,17;15,16, and Gm1,3;5. These haplotypes have all been previously reported in Indian populations. The frequencies of the first four haplotypes resembled the published frequencies for lower-caste Hindus of NW India more than upper-caste Hindus. However, the last two haplotypes have been found only in upper-caste Hindus. The frequency of one of these, Gm1,17;15,16 was higher in Sikhs (0.09) than has been reported in any Indian population with the exception of Parsis (who are descended from Iranians). We speculate that the high frequency of this haplotype may have been characteristic of some of the Hindu castes in the Punjab from which Sikhs are descended.     

Evidence for initial opening of the Pacific ocean in the Jurassic

An argument is presented for the east-west initial opening of the pacific Ocean during Early Jurassic times, on paleontological, biogeograhical, and geological grounds. A new reconstruction of the continents bordering the Pacific Ocean is proposed, based chiefly upon trans-Pacific, terrestrial biotic links that are not reflected in regions bordering the Atlantic. A new Arctic Ocean reconstruction is also proposed. Since the Atlantic and Indian Oceans were closed in the Early Jurassic as well, an expanding-earth model is adopted, instead of a Pangaen reconstruction on a present-sized earth. The model prposed here is also compatible with geological evidence for a narrow, epicontinental Tethys Sea. Sea-floor subduction along the perimeter of the Pacific appears to be actively taking place and in the past was much more extensive along the eastern border than on the western side. The tectonics of Antarctica, the Southwest Pacific, Indonesia, Japan, the Arctic region, western North America, Baja California, the Carribean, and the Gulf of Mexico are discussed in terms of the proposed model. The Pacific sea-floor spreading history is outlined and related to the initial opening of the North Atlantic 180 million years ago (Early Jurassic). The South Pacific and Indian Ocean are both considered to have opened some 155 million years ago (Late Jurassic). The original and present positions of the Jurassic equator are determined.     

Late Silurian brachiopods from Darhan Mumingan Joint Banner, Inner Mongolia

Seven brachiopod species (including three new species) and three undetermined forms are described and figured here from an unnamed stratigraphic unit which mainly consists of argillaceous and bioclastic limestone near the stratotype of the Late Silurian Xibiehe Formation of the Xibiehe section in the Darhan Mumingan Joint Banner, north of the Bateaobao area, Inner Mongolia. Three new species, Eoschizophoria minuta, Navispira navicula and Howellella asiatica are established with transverse serial sections for their interiors. All brachiopod taxa described here show that this unnamed stratigraphic unit is higher than the Late Silurian Xibiehe Formation in the Xibiehe section and is possibly transitional between the Late Silurian and the Early Devonian. Authors temporarily regard this unit as the upper part of the Xibiehe Formation in this paper.     

Mitochondrial DNA analysis shows a Near Eastern Neolithic origin for domestic cattle and no indication of domestication of European aurochs

The extinct aurochs (Bos primigenius primigenius) was a large type of cattle that ranged over almost the whole Eurasian continent. The aurochs is the wild progenitor of modern cattle, but it is unclear whether European aurochs contributed to this process. To provide new insights into the demographic history of aurochs and domestic cattle, we have generated high-confidence mitochondrial DNA sequences from 59 archaeological skeletal finds, which were attributed to wild European cattle populations based on their chronological date and/or morphology. All pre-Neolithic aurochs belonged to the previously designated P haplogroup, indicating that this represents the Late Glacial Central European signature. We also report one new and highly divergent haplotype in a Neolithic aurochs sample from Germany, which points to greater variability during the Pleistocene. Furthermore, the Neolithic and Bronze Age samples that were classified with confidence as European aurochs using morphological criteria all carry P haplotype mitochondrial DNA, suggesting continuity of Late Glacial and Early Holocene aurochs populations in Europe. Bayesian analysis indicates that recent population growth gives a significantly better fit to our data than a constant-sized population, an observation consistent with a postglacial expansion scenario, possibly from a single European refugial population. Previous work has shown that most ancient and modern European domestic cattle carry haplotypes previously designated T. This, in combination with our new finding of a T haplotype in a very Early Neolithic site in Syria, lends persuasive support to a scenario whereby gracile Near Eastern domestic populations, carrying predominantly T haplotypes, replaced P haplotype-carrying robust autochthonous aurochs populations in Europe, from the Early Neolithic onward. During the period of coexistence, it appears that domestic cattle were kept separate from wild aurochs and introgression was extremely rare.     

Size and morphology of the permanent dentition in prehistoric Ohio Valley Amerindians.

Metric and morphological characterizations of the permanent teeth from a total of 155 prehistoric Amerindians are presented. The individuals represent samples from three Ohio Valley burial complexes (considered together as the Late Diffuse group): Glacial Kame, Adena and Ohio Hopewell. Metric data include common measures of central tendency and dispersion. From these measures estimates and analyses of the magnitude of sexual dimorphism and relative variability are presented as well as analyses of the patterns of these estimates. Forty morphological characters are also tabulated. The results indicate a number of provisional hypotheses: the generally larger tooth size of the Late Archaic Indian Knoll when compared to the Late Diffuse groups is consistent with the hypothesis of mitigated selective pressures in more technologically advanced groups; although tooth size is smaller in the Late Diffuse groups, dental morphology is as complex, or more so when compared to the Indian Knoll group. Since morphology and size do not covary exactly the biocultural forces resulting in smaller tooth size do not seem to act as strongly on dental morphology; odontological differences within the Late Diffuse arise primarily between the Glacial Kame-Adena and the Ohio Hopewell. These differences correspond to major biocultural changes in this area; although provisional hypotheses concerning odontological variability are erected, hypotheses concerning evolutionary trends must await the discovery of evolving lineages within these groups; similarities are noted among all compared groups including the pattern and magnitude of sexual dimorphism and relative variability. These parameters may be similar for all eastern Amerindians during this period; finally, the morphology of the deciduous dentition, which generally predicts that of the permanent teeth, is found to be less complex than the permanent teeth. This may be the result of a selective disadvantage for the individuals in the deciduous dentition sample which is reflected in the dentition.     

Ancient DNA from an Early Neolithic Iberian population supports a pioneer colonization by first farmers

The Neolithic transition has been widely debated particularly regarding the extent to which this revolution implied a demographic expansion from the Near East. We attempted to shed some light on this process in northeastern Iberia by combining ancient DNA (aDNA) data from Early Neolithic settlers and published DNA data from Middle Neolithic and modern samples from the same region. We successfully extracted and amplified mitochondrial DNA from 13 human specimens, found at three archaeological sites dated back to the Cardial culture in the Early Neolithic (Can Sadurní and Chaves) and to the Late Early Neolithic (Sant Pau del Camp). We found that haplogroups with a low frequency in modern populations-N* and X1-are found at higher frequencies in our Early Neolithic population (～31%). Genetic differentiation between Early and Middle Neolithic populations was significant (F(ST) ～0.13, P<10(-5)), suggesting that genetic drift played an important role at this time. To improve our understanding of the Neolithic demographic processes, we used a Bayesian coalescence-based simulation approach to identify the most likely of three demographic scenarios that might explain the genetic data. The three scenarios were chosen to reflect archaeological knowledge and previous genetic studies using similar inferential approaches. We found that models that ignore population structure, as previously used in aDNA studies, are unlikely to explain the data. Our results are compatible with a pioneer colonization of northeastern Iberia at the Early Neolithic characterized by the arrival of small genetically distinctive groups, showing cultural and genetic connections with the Near East.     

Dynamic bone remodeling in later Pleistocene fossil hominids

Histomorphometric analysis of femoral and tibial diaphyseal fragments from seven Late Archaic and three Early Modern humans are compared with those of the Pecos, a pre-Columbian Native American population. The ten samples, from Broken Hill (EM-793), Shanidar 2, 3, 4, 5, and 6, Tabun 1, and Skhul 3, 6, and 7, provide age-at-death results consistent with earlier estimates for most individuals. The Pleistocene groups exhibit less bone turnover and smaller osteons than Recent populations. Resorption and formation were both coupled and balanced in these Pleistocene populations, but the overall vigor of individual cells from both the osteoclast and osteoblast cell lines was less than in Recent populations. Thus the greater bone mass in Later Pleistocene members of the genus Homo is not the result of higher levels of bone turnover, at least among adults. © 1996 Wiley-Liss, Inc.     

Evolution,palaeoecology, and palaeobiogeography of the Late Ordovician–Early Silurian brachiopod Epitomyonia

Epitomyonia is characterized by various types of dorsal ridges, which may be transverse, longitudinal, or highly convoluted and probably served as skeletal supports for lophophores of various complexity. Multivariate analyses suggest that the Epitomyonia-bearing brachiopod associations lived in relatively shallow-water environment in the Late Ordovician, and inhabited mainly deep-water environments in the early Wenlock. The temporal and spatial change in the faunal distribution may be explained by three alternative scenarios: (1) Epitomyonia followed the broad evolutionary trend of the Palaeozoic Evolutionary Fauna to shift from shallow- to deeper-water settings over time; (2) the dicoelosiid communities could not compete with the large-shelled pentameride communities in continental shelf settings during the Early Silurian; or (3) only the shallow-water Epitomyonia died out in the Late Ordovician mass extinction event, whereas some poorly known deep-water Late Ordovician forms survived into the Early Silurian. Epitomyonia paucitropida n. sp. from the lower Whittaker Formation (late Katian) of the Mackenzie Mountains, northwestern Canada, is reported as the first known Ordovician species of Epitomyonia from the palaeocontinent of Laurentia, characterized by a small shell with weak, transverse dorsal ridges that are most primitive for the genus.     

Brief communication: Allelic and haplotypic structure at the DRD2 locus among five North Indian caste populations

The dopamine D2 receptor (DRD2) gene, with its known human‐specific derived alleles that can facilitate haplotype reconstruction, presents an important locus for anthropological studies. The three sites (TaqIA, TaqIB, and TaqID) of the DRD2 gene are widely studied in various world populations. However, no work has been previously published on DRD2 gene polymorphisms among North Indian populations. Thus, the present study attempts to understand the genetic structure of North Indian upper caste populations using the allele and haplotype frequencies and distribution patterns of the three TaqI sites of the DRD2 gene. Two hundred forty‐six blood samples were collected from five upper caste populations of Himachal Pradesh (Brahmin, Rajput and Jat) and Delhi (Aggarwal and Sindhi), and analysis was performed using standard protocols. All three sites were found to be polymorphic in all five of the studied populations. Uniform allele frequency distribution patterns, low heterozygosity values, the sharing of five common haplotypes, and the absence of two of the eight possible haplotypes observed in this study suggest a genetic proximity among the selected populations. The results also indicate a major genetic contribution from Eurasia to North Indian upper castes, apart from the common genetic unity of Indian populations. The study also demonstrates a greater genetic inflow among North Indian caste populations than is observed among South Indian caste and tribal populations. Am J Phys Anthropol, 2010. © 2010 Wiley‐Liss, Inc.     

Genetic polymorphisms at the human liver/islet glucose transporter (GLUT2) gene locus in Caucasian and West Indian subjects with type 2 (non-insulin-dependent) diabetes mellitus.

The liver/islet glucose transporter (GLUT2) is mainly expressed in the hepatocytes of the liver and the beta-cells of the pancreatic islets and a defect in this transporter could lead to diabetic phenotypes, such as relative hypoinsulinaemia and reduced uptake and metabolism of glucose in the liver. DNA from unrelated individuals was digested with the restriction endonucleases Bgl-I and Taq-I followed by blotting and hybridisation with a 32P-labelled GLUT2 cDNA which revealed three restriction fragment length polymorphisms (RFLPs) (B1, T1 and T2) in both Caucasian and West Indian populations. Linkage analysis between these variant sites demonstrated that the alleles of these polymorphisms were in strong linkage disequilibrium. Disease association of genetic variants at the GLUT2 locus with type 2 diabetes was examined with these RFLPs in both Caucasian (n = 54) and West Indian (n = 46) populations with type 2 diabetes. There were no significant differences in the frequency of alleles, genotypes or haplotypes between diabetic patients and non-diabetic controls. However, there were significant differences in the allele frequencies of all these three polymorphisms between Caucasian and West Indian populations.