Evaluating functional diversity conservation for freshwater fishes resulting from terrestrial protected areas

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Conservation threats and future prospects for the freshwater fishes of Ecuador: A hotspot of Neotropical fish diversity

Freshwater fish communities in Ecuador exhibit some of the highest levels of diversity and endemism in the Neotropics. Unfortunately, aquatic ecosystems in the country are under serious threat and conditions are deteriorating. In 2018–19, the government of Ecuador sponsored a series of workshops to examine the conservation status of Ecuador's freshwater fishes. Concerns were identified for 35 species, most of which are native to the Amazon region, and overfishing of Amazonian pimelodid catfishes emerged as a major issue. However, much of the information needed to make decisions across fish groups and regions was not available, hindering the process and highlighting the need for a review of the conservation threats to Ecuador's freshwater fishes. Here, we review how the physical alteration of rivers, deforestation, wetland and floodplain degradation, agricultural and urban water pollution, mining, oil extraction, dams, overfishing, introduced species and climate change are affecting freshwater fishes in Ecuador. Although many of these factors affect fishes throughout the Neotropics, the lack of data on Ecuadorian fish communities is staggering and highlights the urgent need for more research. We also make recommendations, including the need for proper enforcement of existing environmental laws, restoration of degraded aquatic ecosystems, establishment of a national monitoring system for freshwater ecosystems, investment in research to fill gaps in knowledge, and encouragement of public engagement in citizen science and conservation efforts. Freshwater fishes are an important component of the cultural and biological legacy of the Ecuadorian people. Conserving them for future generations is critical.     

Relationships between taxonomic and functional components of diversity: implications for conservation of tropical freshwater fishes

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黄河流域淡水鱼类多样性和保护

本文介绍了黄河流域鱼类研究的历史、淡水鱼类的物种组成、整体分布格局、特有性、濒危性, 以及鱼类多样性在黄河上、中、下游等的特点。历史上对于黄河鱼类多样性的研究, 历经了四个阶段, 从最初的零星记录一直到现阶段的深入研究。综合历史记录和野外调查, 已知黄河流域分布的淡水鱼类共计147种, 隶属于12目21科78属, 其中鲤形目种类占据绝对优势。另外, 全流域黄河特有种计有27种, 受危物种24种, 分别占总数的18.37%和16.32%。同中国主要江河相比, 黄河鱼类在高级分类阶元上的多样性较高, 但物种多样性则处在较低水平; 尽管黄河特有鱼类和受危物种比例低于全国平均水平, 但上游特有鱼类和珍稀濒危鱼类的占比很高。目前黄河鱼类多样性大幅降低, 现状调查仅能采获历史记录种类的53.06%。梯级水电开发、水资源过度利用、外来物种、水域污染和过度捕捞都是威胁鱼类多样性的重要因素, 但对各河段和支流的影响不一, 应做出有针对性的保护部署。     

A spatial multicriteria decision analysis for selecting priority sites for plant species restoration: a case study from the Chilean biodiversity hotspot

Developing conservation strategies to restore populations of threatened species has been signaled as an important task by the Convention on Biological Diversity 2011–2020 targets. Species are being threatened not only by habitat loss and fragmentation but increasingly by climate change. As resources for conservation are often limited, and restoration is among the most expensive conservation strategies, developing approaches that help in the prioritization of areas for restoration efforts is a critical task. In this study, we propose a spatial multicriteria decision analysis (SMCDA) framework for identifying potential areas for plant species restoration initiatives that can explicitly take into account future climatic change. As a way to show how the framework can be applied, we took advantage of freely available niche modeling software and geospatial information to identify regional‐scale priority areas for restoration of two threatened endemic tree species (i.e. Bielschmiedia miersii and Pouteria splendens) of the “Chilean Winter Rainfall‐Valdivian Forest” Hotspot. The SMCDA framework allowed us not only to identify priority areas for species restoration but also to analyze how different environmental conditions and land‐use types may affect the selection of areas for species restoration. Our analysis suggests that the inclusion of climate change is a key factor to assess the potential areas for species restoration because species may respond differentially to future climatic conditions. This framework is conceived to be used as a complementary approach to available landscape‐scale spatial conservation planning tools.     

Garden pond diversity: Opportunities for urban freshwater conservation

Urbanisation is increasing globally, degrading terrestrial and freshwater habitats and reducing faunal and floral richness. Whilst the potential for garden ponds to serve as important biodiversity resources in urban areas has been documented in a limited number of studies, quantifying the contribution of garden ponds to urban freshwater diversity has been largely neglected. This study aims to quantify the taxonomic richness, community composition and conservation value of aquatic macroinvertebrates in domestic garden and non-urban ponds. Taxonomic richness was significantly lower in garden ponds than non-urban ponds at an alpha and gamma scale. A greater richness of Odonata, Coleoptera, Gastropoda and Hemiptera were recorded in non-urban ponds. Garden ponds were found to support compositionally different macroinvertebrate communities compared to non-urban ponds, influenced by variation in water depth and conductivity. A total of 23 taxa were recorded from garden ponds only. Non-urban ponds had a significantly higher conservation value compared to garden ponds (87% of garden ponds were of low or moderate conservation value, while only 35% of non-urban ponds were in these categories). Although garden ponds currently support limited macroinvertebrate diversity and have lower conservation value, they contribute to the regional species pool and their potential to limit future urban biodiversity loss is significant. Given their high abundance and popularity within the urban landscape, clear guidance is required for pond-owners on how to best manage garden ponds to support and sustain biodiversity. For this to be achieved, research is required to increase fundamental understanding of urban pond ecology, and the development of evidence led garden pond management practices.     

Assessing genetic diversity for conservation management: a case study of a threatened reptile

The consequences of inbreeding in small isolated populations are well documented, yet populations are often managed in isolation to avoid irreversibly mixing genetic lineages and to maintain the historic integrity of each population. Three remaining populations of Whitaker's skink ( Cyclodina whitakeri ) in New Zealand, remnants of a once wider distribution, illustrate the conflict between this genetic goal (separate management of populations) with the more tangible and immediate threats of small population size and inbreeding. Middle and Castle Islands harbour populations of C. whitakeri and have been separated from each other and from the mainland for ∼10 000 years. The single mainland population at Pukerua Bay is extremely small, declining and deemed a high priority for management. We sequenced a 550 bp region of mitochondrial DNA (mtDNA,ND2) and genotyped animals from all three populations at 13 microsatellite loci. The population of C. whitakeri at Pukerua Bay showed marked differences from the island populations at both mtDNA (unique, fixed haplotype) and microsatellite loci ( F _ST∼0.20), and private alleles were detected at a high frequency (24% of all alleles). However, we attribute this pattern to an historic genetic gradient coupled with rapid genetic drift. Further, animals in captivity show genetic signatures of both Pukerua Bay and island populations, despite the goal to maintain a pure Pukerua Bay stock. The mixed genetic stock in captivity provides an opportunity for the addition of skinks from Middle Island to evaluate the risks of further population hybridization, including the disruption of potential local adaptation, while mitigating the risks of inbreeding.     

Extensive intraspecific genetic diversity of a freshwater crayfish in a biodiversity hotspot

1. The freshwater crayfish Cherax dispar (Decapoda: Parastacidae) inhabits coastal regions and islands of South East Queensland, Australia. We hypothesised that populations of C. dispar on different islands would be more genetically divergent from each other than populations from different drainages within the same island or on the mainland. 2. Phylogenetic and phylogeographic analyses were conducted on two mitochondrial genes (cytochrome oxidase subunit I & 16S ribosomal DNA) and one nuclear gene (Internal Transcribed Spacer region 2). Phylogeographic patterns were compared with those for other freshwater organisms in the area. 3. Deep genetic divergences were found within C. dispar, including four highly divergent (up to 20%) clades. The geographic distribution of each of the clades revealed strong latitudinal structuring along the coast rather than structuring among the islands. The high genetic divergence observed among the C. dispar clades was estimated to have pre‐dated island formation and may represent ancient river drainage patterns. 4. A restricted distribution was observed for the most divergent clade, which was discovered only on two of the sand islands (North Stradbroke Island and Moreton Island). Furthermore, strong phylogeographic structuring was observed within this clade on North Stradbroke Island, where no haplotypes were shared between samples from opposite sides of the island. This low connectivity within the island supports the idea that C. dispar rarely disperse terrestrially (i.e. across watersheds).     

Dietary use and conservation concern of edible wetland plants at indo-burma hotspot: a case study from northeast India

Background

The wetlands of the North East India fall among the global hotspots of biodiversity. However, they have received very little attention with relation to their intrinsic values to human kind; therefore their conservation is hardly addressed. These wetlands are critical for the sustenance of the tribal communities.

Methods

Field research was conducted during 2003 to 2006 in seven major wetlands of four districts of Manipur state, Northeast India (viz. Imphal-East, Imphal-West, Thoubal, and Bishnupur). A total of 224 wetland-plant-collectors were interviewed for the use and economics of species using semi-structured questionnaires and interview schedules. Imphal, Bishenpur and Thoubal markets were investigated in detail for influx and consumption pattern of these plants. The collectors were also inquired for medicinal use of wetland species. Nutritive values of 21 species were analyzed in laboratory. The vouchers were collected for all the species and deposited in the CSIR-NEIST (Formerly Regional Research Laboratory), Substation, Lamphelpat, Imphal, Manipur, India.

Results

We recorded 51 edible wetland species used by indigenous people for food and medicinal purposes. Thirty eight species had high medicinal values and used in the traditional system to treat over 22 diseases. At least 27 species were traded in three markets studied (i.e. Imphal, Thoubal and Bishenpur), involving an annual turnover of 113 tons of wetland edible plants and a gross revenue of Rs. 907, 770/- (US$1 = Rs. 45/-). The Imphal market alone supplies 60% of the total business. Eighty per cent of the above mentioned species are very often used by the community. The community has a general opinion that the availability of 45% species has depleted in recent times, 15 species need consideration for conservation while another 7 species deserved immediate protection measures. The nutrient analysis showed that these species contribute to the dietary balance of tribal communities.

Conclusions

Considering the importance of wild wetland plants in local sustenance, it is suggested to protect their habitats, develop domestication protocols of selected species, and build programs for the long-term management of wetland areas by involving local people. Some medicinal plants may also be used to develop into modern medicines.

     

Phylogenetic diversity: a quantitative framework for measurement of priority and achievement in biodiversity conservation

The value of biodiversity lies in its option value for the future, the greater the complement of contemporary biodiversity conserved today, the greater the possibilities for future biodiversity because of the diverse genetic resource needed to ensure continued evolution in a changing and uncertain world. From this perspective, biodiversity option value can be equated with richness in the different features expressed by species. An individual species of greater value is one contributing more novel features to a given subset. The feature diversity of species and communities is difficult to estimate directly, but can be predicted by the phylogenetic relationships among the species. The ‘Phylogenetic Diversity’ measure (PD) (Faith, 1992a) estimates the relative feature diversity of any nominated set of species by the sum of the lengths of all those branches spanned by the set. These branch lengths reflect patristic or path‐length distances. This study first reviews and expands on some of the properties of PD, and develops simple modifications of the measure (δnPD and enPD) to enable capture of both the phylogenetic relatedness of species and their abundances in each sample. Then the application of PD, δnPD and enPD to a wide range of conservation and resource management issues is demonstrated using avian case studies. Supertree construction procedures (matrix representation using parsimony analysis; average consensus) were used to combine the extensive DNA‐DNA hybridization tree of Sibley & Ahlquist (1990) with numerous, recently published phylogenetic reconstructions to derive a phylogenetic tree for the global avian fauna. Using this supertree as a systematic framework, the utility of PD was demonstrated in four case studies: (i) state of the environment reporting, with changes in avian faunas resulting from extinctions quantified as indicators of the state of biodiversity at Global, New Zealand and Waikato region scales, and changes in available habitat quantified as indicators of pressures on biodiversity in the Waikato region; (ii) setting priorities for threatened species management, with PD as a measure of option value integrated with information on survivorship expectations to develop a ranking among threatened New Zealand forest bird species; (iii) monitoring biotic response to management, with data from 5‐minute counts used to analyse changes in forest bird communities under three management regimes in New Zealand; and (iv) selection of indicator species, with PD used to objectively identify subsets of species in the Global, New Zealand and Waikato avian faunas that comprise a high proportion of the option value in those faunas.     

Plant communities as a tool for setting priorities in biodiversity conservation: a novel approach to Iberian aquatic vegetation

Although conservation efforts are traditionally based on species red lists or similar documents, recent initiatives are starting to shift this scope to include other biodiversity structures and biological classifications. Plant communities have been indicated as being among the most promising categories for setting conservation priorities but their importance and potential is still underestimated. In this study we develop a conservation priority list based on aquatic plant communities of the Iberian Peninsula. Four criteria were used to perform a cumulative point-scoring ranking: regional responsibility, local rarity, wealth of its endangered flora, and habitat vulnerability. Our ranking constitutes the first comprehensive classification of aquatic vegetation in relation to its conservation priorities in Southern Europe. It reveals that amphibious communities are the most important vegetation target for conservation in Iberia related to oligotrophic environments with a bioclimatic Atlantic distribution. Plant communities characteristic of eutrophic waters or widely distributed were found to be cause for less concern when setting conservation priorities. Our results bring to light various discrepancies and gaps in current conservation laws affecting the Iberian Peninsula. Our study highlights the potential of plant communities in biodiversity conservation as they provide valuable information of habitat singularity, and supports that neither the sole use of species nor large scale approaches unaware of regional singularities are appropriate in setting conservation priorities.     

Propagule pressure and the invasion risks of non-native freshwater fishes: a case study in England

European countries in general, and England in particular, have a long history of introducing non-native fish species, but there exist no detailed studies of the introduction pathways and propagules pressure for any European country. Using the nine regions of England as a preliminary case study, the potential relationship between the occurrence in the wild of non-native freshwater fishes (from a recent audit of non-native species) and the intensity ( i.e. propagule pressure) and diversity of fish imports was investigated. The main pathways of introduction were via imports of fishes for ornamental use ( e.g. aquaria and garden ponds) and sport fishing, with no reported or suspected cases of ballast water or hull fouling introductions. The recorded occurrence of non-native fishes in the wild was found to be related to the time (number of years) since the decade of introduction. A shift in the establishment rate, however, was observed in the 1970s after which the ratio of established-to-introduced species declined. The number of established non-native fish species observed in the wild was found to increase significantly ( P < 0·05) with increasing import intensity (log₁₀ x + 1 of the numbers of fish imported for the years 2000–2004) and with increasing consignment diversity (log₁₀ x + 1 of the numbers of consignment types imported for the years 2000–2004). The implications for policy and management are discussed.     

Transgenerational marking of freshwater fishes with enriched stable isotopes: a tool for fisheries management and research

A promising new method of marking larval freshwater fishes with enriched stable isotopes by means of injecting the maternal parent with the marking agent was investigated. The ¹³⁸Ba:¹³⁷Ba ratios in the otoliths of larval golden perch Macquaria ambigua were compared to determine the effect of injecting female broodstock with different dosages of enriched ¹³⁷Ba at various times before spawning. There was 100% mark success in the progeny of fish injected with 20 μg g⁻¹ of enriched ¹³⁷Ba 24 h before inducing spawning with hormones and 40 μg g⁻¹ administered at the same time as inducement of spawning. Injection of 40 μg g⁻¹ enriched ¹³⁷Ba 21 days before spawning resulted in only 81% mark success and suggests rapid elimination of barium in M. ambigua . Injection with enriched ¹³⁷Ba did not significantly affect the fertilization rate, number of fertilized eggs or hatching rate compared with long-term hatchery records. These results suggest that transgenerational marking is an effective and affordable means of mass-marking larval fishes. Thousands of larval fishes can be permanently marked with a unique artificial isotopic mark via a single injection into the maternal parent, thus avoiding the handling of individual fishes or having to deal with chemical baths. Because no single mark or tagging method is suitable for all situations, transgenerational marking with enriched stable isotopes provides another method for researchers and managers to discriminate both hatchery-reared and wild fishes.     

Influence of scale on conservation priority setting – a test on African mammals

Broad-scale priority regions for conservation can be identified usingdatabases on species distribution through the application of site-selectionalgorithms. However, the influence of scale on large-scale priority setting isstill unclear. Using a data set of all 939 sub-Saharan mammal species,we wanted to know if continental conservation priorities derived at the scales of 1°, 2°,4° and 8° latitude–longitude grid cells are consistent. We testedwhether (1) geographical location of minimum sets were nested across scale, (2)the selection sequence (priority) of areas within a minimum set were scaledependent, and (3) these coarse-scale priorities can act as a cost-effectiveshortcut for the identification of fine-scale priorities. We found that minimumsets at smaller scales were largely represented within minimum sets at largerscales, especially when flexibility was considered. However, the geographicallocation of the grid cells with highest priority in the minimum sets was onlyscale independent if ranked by number of endangered species, total speciesrichness or rare quartile species richness, but surprisingly not bycomplementary species richness. Minimum sets at a 1° scale were generallyidentified within the areas of the 2°, 4° and 8° minimum sets.Therefore, coarse-scale priorities may provide a pragmatic basis for immediateassessment of priorities for conservation.     

Structure and diversity of fishes in a freshwater and coastal subtropical lagoon

This study examined the fish communities of Peri Lagoon in southern Brazil to aid in the development of an effective management plan because the area is under threat from human activities. Sampling of fish fauna, ichthyoplankton and limnological data were compared between sites, differing by habitat type and characteristics such as depth, substratum composition and vegetation type. Results were significantly related to site, with the highest diversity and abundance recorded at shallow vegetated sites. A total of 14 fish species were recorded throughout the lagoon, with the most abundant being Hyphessobrycon luetkenii. Of the 14 species, half were sampled at their larval stage, suggesting a healthy and protected system. Significantly more larvae and eggs were collected during colder months (autumn to winter) and at sites closer to stream flow, possibly owing to increased food sources and habitat protection. This study highlights the importance of Peri Lagoon as a nursery ground for a wide range of fish species, providing essential information for incorporation into the future protection of fish stocks throughout Brazil.     

Cryptic diversity in Indo-Australian rainbowfishes revealed by DNA barcoding: implications for conservation in a biodiversity hotspot candidate

The rainbowfishes of the family Melanotaeniidae represent one of the largest radiations of freshwater fishes from the Indo-Australian archipelago. A total of 75 nominal species have been described, among which several have become very popular among tropical fish hobbyists because of their tendency to form large schools of colourful individuals. Facing habitat loss and competition or predation by introduced species, this group has become a priority in the conservation of ornamental fishes in Indonesia. In this context, several expeditions have been conducted between 2007 and 2010 in Indonesian Papua with the aim to initiate a large-scale survey of the genetic resources in this group. We assessed the diversity of the Papua rainbowfishes with DNA barcoding. We sequenced the mitochondrial COI gene for 350 specimens belonging to 53 nominal species throughout the Indo-Australian archipelago. Unexpected levels of cryptic diversity and endemism were detected since additional cryptic lineages were detected in several watersheds from the Vogelkop and the Lengguru massif. DNA barcoding supports the presence of nearly 30 evolutionary lineages among the 15 nominal species sampled in the Vogelkop and all these lineages are endemic to a single lake or watershed. This result highlights that the diversity of the family has been largely underestimated and urges for the identification of conservation priorities in Papua.