植物中的一种内源小RNA——ta-siRNA

随着对miRNA和siRNA研究的逐步深入,越来越多的新型小RNA被科学家们所认识和了解。内源ta-siRNA是新近在植物中发现的依赖于miRNA、长度为21个碱基的小RNA,对植物的生长发育过程具有重要的表达调控功能。ta-siRNA的产生需要miRNA的剪切引发,之后通过siRNA途径形成,但产生的ta-siRNA生物学功能上不同于其他siRNA,其作用机制类似于miRNA。文章通过综述ta-siRNA的一些研究进展,对ta-siRNA的形成机制和功能进行简单介绍。     

MAPK级联途径参与ABA信号转导调节的植物生长发育过程

植物激素ABA参与调控植物生长发育和生理代谢以及多种胁迫应答过程,促分裂原活化蛋白激酶（MAPK）级联途径应答于多种生物和非生物胁迫,广泛参与调控植物的生长发育。MAPK级联途径与ABA信号转导协同作用参与调控植物种子萌发、气孔运动和生长发育,本文主要归纳了植物中受ABA调控激活的MAPK级联途径成员,阐述了它们参与ABA信号转导调控植物生理反应和生长发育的过程,并对MAPK级联途径与ABA信号转导的研究方向作出了展望,指出对MAPK下游底物的筛选是完善MAPK级联途径的重要组成部分。     

MAPK级联及其在植物抗病防卫反应中的研究进展

促分裂原活化蛋白激酶(MAPK)级联信号转导途径参与了生物体生长发育和抗逆胁迫生理。植物MAPK级联途径一般由三个丝氨酸/苏氨酸蛋白激酶组分构成:包括MAPKKK(MEKK、MAP3K)、MAPKK(MEK)和MAPK。植物在响应外界环境刺激时,MAPKKK首先被自磷酸化激活,依次通过磷酸化激活MAPKK和MAPK,进而将外界信号在细胞内传递从而调控目标基因的表达。MAPK级联途径参与植物激素、生物胁迫、非生物胁迫等过程的信号传递,本文就MAPK级联途径在植物抗病防卫反应中的研究进展进行综述。     

多胺与植物衰老关系研究进展

多胺作为生理活性物质与植物衰老关系密切。本文综述了近十多年来多胺对衰老的调控作用,从调节细胞膜的理化性质、生物大分子合成作用以及多胺与乙烯的关系等方面阐述了多胺延缓衰老的机制,比较了多胺和影响衰老的植物激素在信号转导过程中的作用。     

植物中的MAPK及其在信号传导中的作用

促分裂原活化蛋白激酶(MAPKs)是一类存在于真核生物中的丝氨酸/苏氨酸蛋白激酶。同动物和酵母中MAPKs类似,植物中的MAPK级联途径也是由MAPKs、MAPKKs、MAPKKKs三种类型的激酶组成。植物细胞内受体接受外界刺激信号,然后依次磷酸化激活MAPKKKs、MAPKKs和MAPKs,并影响相关基因表达。目前已经从植物中分离到一些MAPKs、MAPKKs和MAPKKKs,它们参与了植物激素、生物胁迫及非生物胁迫等过程的信号传导。介绍了植物响应外界环境胁迫过程中,不同机制和因子对MAPKs级联途径的调控。     

MAPK和活性氧参与植物抗病防卫反应的信号转导

促分裂原活化蛋白激酶（MAPK）级联途径和活性氧参与调控植物过敏性细胞死亡。本文介绍促分裂原活化蛋白激酶级联途径在植物抗病防卫反应信号转导中的作用研究进展,并对活性氧积累与MAPK之间的关系作了分析。     

多胺与植物衰老关系研究进展

多胺作为生理活性物质与植物衰老关系密切。本文综述了近十年来多胺对衰老的调控作用,从调节细胞膜的理化性质,生物大分子合成作用以及多胺与乙烯的关系等方面阐述了多胺延缓衰老的机制,比较了多胺和影响衰老的植物激素在信号转导过程中的作用。     

植物MAPK级联途径参与调控ABA信号转导

促分裂原活化蛋白激酶(MAPK)级联途径信号通路在真核生物细胞信号的转换和放大过程中起重要作用。MAPK级联途径由三个成员组成,分别是MAPK、MAPKK及MAPKKK,此三个信号组分按照MAPKKK-MAPKK-MAPK的方式依次磷酸化将外源信号级联放大向下传递。大量研究表明,植物MAPK级联途径参与调控脱落酸(ABA)信号转导。因此,该文就ABA和MAPK的生物学功能、ABA信号转导中的磷酸化与去磷酸化以及MAPK级联途径与ABA信号转导之间的关系等方面的研究进展进行综述,以便进一步认识MAPK和ABA信号转导的分子机制。     

植物对盐胁迫响应的信号转导途径

植物通过调控复杂的信号网络来应对盐胁迫。近年来,随着植物基因工程技术的发展,对植物在盐胁迫下信号转导系统的研究取得了一定进展。本文以拟南芥为代表,对盐胁迫下参与调控植物耐盐生理响应的两大类主要信号转导途径——Ca2＋依赖型信号转导通路和丝裂原活化蛋白激酶（MAPK）级联反应途径的研究进展进行综述,主要介绍参与各信号转导通路的组件及诱发的耐盐生理响应等方面,并对该研究领域存在的问题及今后可能的研究方向进行展望。     

植物不定根发生机理的研究进展

植物不定根的发生涉及外源信号感知与内外信号级联耦合,是一个极其复杂的器官发生过程,一直备受植物学界关注。该文对近年来国内外有关不定根发生诱导期、启动期和表达期3个重要时期的信号转导、基因表达、细胞与代谢特征等方面的研究进展进行综述,为不定根的研究提供理论参考。     

Oryza sativa dicer-like4 reveals a key role for small interfering RNA silencing in plant development

MicroRNAs and small interfering RNAs (siRNAs) are two classes of small regulatory RNAs derived from different types of precursors and processed by distinct Dicer or Dicer-like (DCL) proteins. During evolution, four Arabidopsis thaliana DCLs and six rice (Oryza sativa) DCLs (Os DCLs) appear to have acquired specialized functions. The Arabidopsis DCLs are well characterized, but those in rice remain largely unstudied. Here, we show that both knockdown and loss of function of rice DCL4, the homolog of Arabidopsis DCL4, lead to vegetative growth abnormalities and severe developmental defects in spikelet identity. These phenotypic alterations appear to be distinct from those observed in Arabidopsis dcl4 mutants, which exhibit accelerated vegetative phase change. The difference in phenotype between rice and Arabidopsis dcl4 mutants suggests that siRNA processing by DCL4 has a broader role in rice development than in Arabidopsis. Biochemical and genetic analyses indicate that Os DCL4 is the major Dicer responsible for the 21-nucleotide siRNAs associated with inverted repeat transgenes and for trans-acting siRNA (ta-siRNA) from the endogenous TRANS-ACTING siRNA3 (TAS3) gene. We show that the biogenesis mechanism of TAS3 ta-siRNA is conserved but that putative direct targets of Os DCL4 appear to be differentially regulated between monocots and dicots. Our results reveal a critical role of Os DCL4-mediated ta-siRNA biogenesis in rice development.     

Control theory of regulatory cascades.

We have extended Metabolic Control Theory to include cascades consisting of several modules controlling each other solely via regulatory effects. We derive several theorems that determine how the control properties of a cascade derive from (1) the control properties of each module, taken in isolation and (2) the regulatory interactions between the modules. Two cases are treated explicitly. The first concerns cascades in the absence of feed-back: in this case the internal control behaviour of each module is unaffected by external regulatory interactions. The second includes one feed-back loop and gives a quantitative expression of how feed-back modifies control properties: the internal control matrix within one module can be calculated as if the elasticity matrix of this module was the sum of its intrinsic elasticity matrix and a cyclic regulation matrix. More complex cascades can be analysed recursively by subdividing them into simpler modules, which can be treated individually. The theoretical framework developed here should facilitate quantitative experimental analysis of the control of cell physiology where the latter involves regulatory cascades.     

Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis

Formation of trans-acting small interfering RNAs (ta-siRNAs) from the TAS3 precursor is triggered by the AGO7/miR390 complex, which primes TAS3 for conversion into double-stranded RNA by the RNA-dependent RNA polymerase RDR6 and SGS3. These ta-siRNAs control several aspects of plant development. The mechanism routing AGO7-cleaved TAS3 precursor to RDR6/SGS3 and its subcellular organization are unknown. We show that AGO7 accumulates together with SGS3 and RDR6 in cytoplasmic siRNA bodies that are distinct from P-bodies. siRNA bodies colocalize with a membrane-associated viral protein and become positive for stress-granule markers upon stress-induced translational repression, this suggests that siRNA bodies are membrane-associated sites of accumulation of mRNA stalled during translation. AGO7 congregates with miR390 and SGS3 in membranes and its targeting to the nucleus prevents its accumulation in siRNA bodies and ta-siRNA formation. AGO7 is therefore required in the cytoplasm and membranous siRNA bodies for TAS3 processing, revealing a hitherto unknown role for membrane-associated ribonucleoparticles in ta-siRNA biogenesis and AGO action in plants.     

Distinct Regulation of Adaxial-Abaxial Polarity in Anther Patterning in Rice

Establishment of adaxial-abaxial polarity is essential for lateral organ development. The mechanisms underlying the polarity establishment in the stamen remain unclear, whereas those in the leaf are well understood. Here, we investigated a rod-like lemma (rol) mutant of rice (Oryza sativa), in which the development of the stamen and lemma is severely compromised. We found that the rod-like structure of the lemma and disturbed anther patterning resulted from defects in the regulation of adaxial-abaxial polarity. Gene isolation indicated that the rol phenotype was caused by a weak mutation in SHOOTLESS2 (SHL2), which encodes an RNA-dependent RNA polymerase and functions in trans-acting small interfering RNA (ta-siRNA) production. Thus, ta-siRNA likely plays an important role in regulating the adaxial-abaxial polarity of floral organs in rice. Furthermore, we found that the spatial expression patterns of marker genes for adaxial-abaxial polarity are rearranged during anther development in the wild type. After this rearrangement, a newly formed polarity is likely to be established in a new developmental unit, the theca primordium. This idea is supported by observations of abnormal stamen development in the shl2-rol mutant. By contrast, the stamen filament is likely formed by abaxialization. Thus, a unique regulatory mechanism may be involved in regulating adaxial-abaxial polarity in stamen development.     

Characterization of unique small RNA populations from rice grain

Small RNAs (approximately 20 to 24 nucleotides) function as naturally occurring molecules critical in developmental pathways in plants and animals. Here we analyze small RNA populations from mature rice grain and seedlings by pyrosequencing. Using a clustering algorithm to locate regions producing small RNAs, we classified hotspots of small RNA generation within the genome. Hotspots here are defined as 1 kb regions within which small RNAs are significantly overproduced relative to the rest of the genome. Hotspots were identified to facilitate characterization of different categories of small RNA regulatory elements. Included in the hotspots, we found known members of 23 miRNA families representing 92 genes, one trans acting siRNA (ta-siRNA) gene, novel siRNA-generating coding genes and phased siRNA generating genes. Interestingly, over 20% of the small RNA population in grain came from a single foldback structure, which generated eight phased 21-nt siRNAs. This is reminiscent of a newly arising miRNA derived from duplication of progenitor genes. Our results provide data identifying distinct populations of small RNAs, including phased small RNAs, in mature grain to facilitate characterization of small regulatory RNA expression in monocot species.