Biomechanical highlights — the personal miscellany of a decade

Developments of the past decade, primarily in biomechanics, are characterized through personal recollections. Topics covered include pressure treatment of hypertrophic scars, laser eradication of tattoos, amputation stump and artificial limb interactions, elbow arthoplasty, disability rehabilitation and training for sports performance, functional electrical stimulation and joint goniometry. The review is prefaced by comments on the present day context and resource environment of bioengineering research and ends by discussing the anticipated advent of health maintenance orientated community care as the activity of first priority for the future.     

Life-LCA: assessing the environmental impacts of a human being—challenges and perspectives

Purpose

The life-cycle assessment (LCA) method is typically applied to products, but the potential and demand for extending its use also to other applications are high. In this respect, this paper proposes an LCA concept to be used for the assessment of human beings as new study objects, namely Life-LCA. Key challenges of such a new approach and potential solutions for those are identified and discussed.

Methods

The Life-LCA concept was developed based on a detailed desktop research. Several Life-LCA-specific challenges were identified and categorized under three research questions. One of these questions focusses on the conceptual design of a Life-LCA method while the others are addressing operational issues, which are the definition of the new study system and the practical assessment of complex human consumption behaviors. Methodological solutions are proposed, e.g., based on suggestions provided in the existing methods product LCA and organizational LCA (O-LCA).

Results and discussion

Conceptual challenges arise from the general diversity, complexity, and temporal development of human lives and consumption behaviors. We introduce Life-LCA as a two-dimensional method that covers both, the new human life cycle (dimension 1) and the life cycle of the consumed products (dimension 2). Furthermore, the two types Individual Life-LCA and Lifestyle-LCA are differentiated. Especially, the definition of a general system boundary for Life-LCA and data collection and evaluation face many operational challenges. For example, the social behavior of human beings is a new factor to be considered which causes new allocation problems in LCA. Moreover, the high demand for aggregated LCA data requires specific rules for data collection and evaluation as well as a new bottom-up product clustering scheme.

Conclusions

Life-LCA, either used for the assessment of individual lives or lifestyles, has the potential to raise environmental awareness of people by making their specific environmental impacts comprehensively measurable and thus, tangible. However, many challenges need to be solved in future interdisciplinary research to develop a robust and applicable method. This paper conceptualizes such an approach and proposes solutions that can serve as a framework for ongoing method development.

     

Flashback and foreshadowing—a review of the taxon Opisthobranchia

Opisthobranchia have experienced an unsettled taxonomic history. At the moment their taxonomy is in state of dramatic flux as recent phylogenetic studies have revealed traditional Opisthobranchia to be paraphyletic or even polyphyletic, allocating some traditional opisthobranch taxa to other groups of Heterobranchia, e.g. Pulmonata. Here we review the history of Opisthobranchia and their subgroups, explain their traditionally proposed relationships, and outline the most recent phylogenetic analyses based on various methods (morphology, single gene and multiple gene analyses, as well as genomic data). We also present a phylogenetic hypothesis on Heterobranchia that, according to the latest results, represents a consensus and is the most probable one available to date. The proposed phylogeny supports the Acteonoidea outside of monophyletic Euthyneura, the basal euthyneuran split into Nudipleura (Nudibranchia plus Pleurobranchoidea) and the recently established taxon Tectipleura. The latter divides into the Euopisthobranchia, containing most of the major traditional opisthobranch clades, and the Panpulmonata, with a mix of the former opisthobranch, putative allogastropod and pulmonate taxa. This “new euthyneuran tree” rejects the traditional taxa Opisthobranchia and Pulmonata, and, in particular, has profound implications for preconceived textbook scenarios of opisthobranch and pulmonate evolution, which must now be reconsidered. In the absence of systematic barriers, research communities—which have traditionally investigated marine and non-marine heterobranchs separately—need to interact and finally merge for the sake of science.     

The fungal–mineral interface: challenges and considerations of micro-analytical developments

Over recent years, the role of fungi, especially mycorrhizal fungi, in the weathering of rock-forming minerals has been increasingly recognised. Much of our understanding of the effects of fungi on mineral weathering is based on macroscopic studies. However, the ability of fungi to translocate materials, including organic acids and siderophores, to specific areas of a mineral surface leads to significant spatial heterogeneity in the weathering process. Thus, geomycologists are confronted with unique challenges of how to comprehend and quantify such a high degree of diversity and complicated arrays of interactions. Recent advances in experimental and analytical techniques have increased our ability to probe the fungal–mineral interface at the resolution necessary to decouple significant biogeochemical processes. Modern microscopy, spectroscopy, mass spectrometry, wet chemistry, and scattering techniques allow for the selective extraction of physical, chemical, and structural data at the micro- to nano-scale. These techniques offer exciting possibilities to study fungal–mineral interactions at the scale of individual hyphae. In this review, we give an overview of some of these techniques with their characteristics, advantages and limitations, and how they can be used to further our understanding of biotic mineral weathering.     

Getting rid of the cuckoo Cuculus canorus egg: why do hosts delay rejection?

Egg discrimination is well documented in many hosts of avianbrood parasites, but the proximate mechanisms of egg recognitionand rejection decisions are poorly understood. Relevant in thisrespect is the observation that rejectors of parasite eggs oftendelay their response. This delay has implications for understandingmechanisms important for egg recognition and is the main focusof the present study. We investigated experimentally the relativeeffects of egg mimicry and eggshell strength of common cuckooCuculus canorus eggs on the delay in rejection in marsh warblersAcrocephalus palustris. In addition, by video recording hostresponses, we elucidate the proximate mechanisms behind thedelayed rejections. Host nests were experimentally parasitizedwith 3 types of real eggs differing in mimicry and/or eggshellstrength. Both egg mimicry and eggshell strength significantlyaffected the time to rejection, but the effect of mimicry wasdominant. The delayed rejection of mimetic eggs was explainedby the existence of latency to the release of rejection behaviorbecause of recognition problems. Second, when rejection responsetowards mimetic eggs was initiated, it was less intense comparedwith hosts experiencing nonmimetic eggs. Our results are consistentwith the hypothesis that host motivation when confronted withmimetic eggs needs to increase above a certain threshold beforerejection behavior is released, which likely minimizes the riskof recognition errors. An additional component of the delayin rejection as shown by hosts facing nonmimetic eggs was theseemingly inefficient host rejection behavior, probably reflectinglack of previous experience.     

Compound-specific isotope analysis (CSIA) of micropollutants in the environment — current developments and future challenges

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Invited review: Improving feed efficiency of beef cattle – the current state of the art and future challenges

Improvements in feed efficiency of beef cattle have the potential to increase producer profitability and simultaneously lower the environmental footprint of beef production. Although there are many different approaches to measuring feed efficiency, residual feed intake (RFI) has increasingly become the measure of choice. Defined as the difference between an animal’s actual and predicted feed intake (based on weight and growth), RFI is conceptually independent of growth and body size. In addition, other measurable traits related to energy expenditure such as estimates of body composition can be included in the calculation of RFI to also force independence from these traits. Feed efficiency is a multifactorial and complex trait in beef cattle and inter-animal variation stems from the interaction of many biological processes influenced, in turn, by physiological status and management regimen. Thus, the purpose of this review was to summarise and interpret current published knowledge and provide insight into research areas worthy of further investigation. Indeed, where sufficient suitable reports exist, meta-analyses were conducted in order to mitigate ambiguity between studies in particular. We have identified a paucity of information on the contribution of key biological processes, including appetite regulation, post-ruminal nutrient absorption, and cellular energetics and metabolism to the efficiency of feed utilisation in cattle. In addition, insufficient information exists on the relationship between RFI status and productivity-related traits at pasture, a concept critical to the overall lifecycle of beef production systems. Overall, published data on the effect of RFI status on both terminal and maternal traits, coupled with the moderate repeatability and heritability of the trait, suggest that breeding for improved RFI, as part of a multi-trait selection index, is both possible and cumulative, with benefits evident throughout the production cycle. Although the advent of genomic selection, with associated improved prediction accuracy, will expedite the introgression of elite genetics for feed efficiency within beef cattle populations, there are challenges associated with this approach which may, in the long-term, be overcome by increased international collaborative effort but, in the short term, will not obviate the on-going requirement for accurate measurement of the primary phenotype.     

Oligochaeta of the Danube River — a faunistical review

The aim of this work is to discuss the distribution of Oligochaeta (Annelida) in the Danube River using the collections made by the Joint Danube Survey 2007 (JDS2) on more than 2800 km of the river. The basic faunistical features of the oligochaete assemblages were analysed with regard to three main sectors of the Danube (upper, middle and lower reaches, the last with the Danube Delta). A total of 52 oligochaete taxa have been recorded. Most of the observed species are typical of the potamon-type rivers in the region, and are well adapted to moderate-to-high organic load. The highest taxa richness and frequency of occurrence were observed among the Tubificidae family. Naididae, Propappidae, Enchytraeidae and Haplotaxidae had also low frequency. The upper reach of the Danube showed the lowest species richness, while the middle reach is characterised by its highest species richness. Construction of dams and regulation of the riverbed have resulted in an increase of limno(rheo)philic taxa which prefer slow-flowing and lentic zones.     

Biodiesel production—current state of the art and challenges

Biodiesel is a clean-burning fuel produced from grease, vegetable oils, or animal fats. Biodiesel is produced by transesterification of oils with short-chain alcohols or by the esterification of fatty acids. The transesterification reaction consists of transforming triglycerides into fatty acid alkyl esters, in the presence of an alcohol, such as methanol or ethanol, and a catalyst, such as an alkali or acid, with glycerol as a byproduct. Because of diminishing petroleum reserves and the deleterious environmental consequences of exhaust gases from petroleum diesel, biodiesel has attracted attention during the past few years as a renewable and environmentally friendly fuel. Since biodiesel is made entirely from vegetable oil or animal fats, it is renewable and biodegradable. The majority of biodiesel today is produced by alkali-catalyzed transesterification with methanol, which results in a relatively short reaction time. However, the vegetable oil and alcohol must be substantially anhydrous and have a low free fatty acid content, because the presence of water or free fatty acid or both promotes soap formation. In this article, we examine different biodiesel sources (edible and nonedible), virgin oil versus waste oil, algae-based biodiesel that is gaining increasing importance, role of different catalysts including enzyme catalysts, and the current state-of-the-art in biodiesel production. JIMB 2008: BioEnergy—special issue.     

Botanical drugs—A brief review of the industry with comments on recent developments

Economic Botany - Old-World sources of botanical drugs are still foremost, despite attempts during the two World Wars to develop American sources of Digitalis, Juniper berries, African peppers,...     

Adipose tissue and the vascularization of biomaterials: Stem cells,microvascular fragments and nanofat—a review

Tissue defects in the human body after trauma and injury require precise reconstruction to regain function. Hence, there is a great demand for clinically translatable approaches with materials that are both biocompatible and biodegradable. They should also be able to adequately integrate within the tissue through sufficient vascularization. Adipose tissue is abundant and easily accessible. It is a valuable tissue source in regenerative medicine and tissue engineering, especially with regard to its angiogenic potential. Derivatives of adipose tissue, such as microfat, nanofat, microvascular fragments, stromal vascular fraction and stem cells, are commonly used in research, but also clinically to enhance the vascularization of implants and grafts at defect sites. In plastic surgery, adipose tissue is harvested via liposuction and can be manipulated in three ways (macro-, micro- and nanofat) in the operating room, depending on its ultimate use. Whereas macro- and microfat are used as a filling material for soft tissue injuries, nanofat is an injectable viscous extract that primarily induces tissue remodeling because it is rich in growth factors and stem cells. In contrast to microfat that adds volume to a defect site, nanofat has the potential to be easily combined with scaffold materials due to its liquid and homogenous consistency and is particularly attractive for blood vessel formation. The same is true for microvascular fragments that are easily isolated from adipose tissue through collagenase digestion. In preclinical animal models, it has been convincingly shown that these vascular fragments inosculate with host vessels and subsequently accelerate scaffold perfusion and host tissue integration. Adipose tissue is also an ideal source of stem cells. It yields larger quantities of cells than any other source and is easier to access for both the patient and doctor compared with other sources such as bone marrow. They are often used for tissue regeneration in combination with biomaterials. Adipose-derived stem cells can be applied unmodified or as single cell suspensions. However, certain pretreatments, such as cultivation under hypoxic conditions or three-dimensional spheroids production, may provide substantial benefit with regard to subsequent vascularization in vivo due to induced growth factor production. In this narrative review, derivatives of adipose tissue and the vascularization of biomaterials are addressed in a comprehensive approach, including several sizes of derivatives, such as whole fat flaps for soft tissue engineering, nanofat or stem cells, their secretome and exosomes. Taken together, it can be concluded that adipose tissue and its fractions down to the molecular level promote, enhance and support vascularization of biomaterials. Therefore, there is a high potential of the individual fat component to be used in regenerative medicine.     

Application of essential oils as preservatives in food systems: challenges and future prospectives – a review

Phytochemistry Reviews - The production of safe foods with little or no artificial preservatives is one of the foremost leading challenges for food manufacturing industries because synthetic...     

Characteristics of attachment and growth of Thiobacillus caldus on sulphide minerals: a chemotactic response to sulphur minerals?

To further our understanding of the ecological role of sulphur-oxidizing microorganisms in the generation of acid mine drainage (AMD), growth and attachment of the chemoautotrophic sulphur-oxidizing bacterium, Thiobacillus caldus , on the sulphide minerals pyrite, marcasite and arsenopyrite was studied. Growth curves were estimated based on total cells detected in the system (in suspension and attached to mineral surfaces). In general, higher cell numbers were detected on surfaces than in suspension. Fluorescent in situ hybridizations to cells on surfaces at mid-log growth confirmed that cells on surfaces were metabolically active. Total cell (both surface and solution phase) generation times on pyrite and marcasite (both FeS₂) were calculated to be ≈ 7 and 6 h respectively. When grown on pyrite (not marcasite), the number of T. caldus cells in the solution phase decreased, while the total number of cells (both surface and solution) increased. Additionally, marcasite supported about three times more total cells (≈ 3 × 10⁹) than pyrite (≈ 8 × 10⁸). This may be attributed to the dissolution rate of marcasite, which is twice that of pyrite. Epifluorescent and scanning electron microscopy (SEM) were used to analyse the cell orientation on surfaces. Results of Fourier transform analysis of fluorescent images confirmed that attachment to all three sulphides occurred in an oriented manner. Results from high-resolution SEM imaging showed that cell orientation coincides with dissolution pit edges and secondary sulphur minerals that develop during dissolution. Preferential colonization of surfaces relative to solution and oriented cell attachment on these sulphide surfaces suggest that T. caldus may chemotactically select the optimal site for chemoautotrophic growth on sulphur (i.e. the mineral surface).     

BioGPS and GXD: mouse gene expression data—the benefits and challenges of data integration

Mouse gene expression data are complex and voluminous. To maximize the utility of these data, they must be made readily accessible through databases, and those resources need to place the expression data in the larger biological context. Here we describe two community resources that approach these problems in different but complementary ways: BioGPS and the Mouse Gene Expression Database (GXD). BioGPS connects its large and homogeneous microarray gene expression reference data sets via plugins with a heterogeneous collection of external gene centric resources, thus casting a wide but loose net. GXD acquires different types of expression data from many sources and integrates these data tightly with other types of data in the Mouse Genome Informatics (MGI) resource, with a strong emphasis on consistency checks and manual curation. We describe and contrast the “loose” and “tight” data integration strategies employed by BioGPS and GXD, respectively, and discuss the challenges and benefits of data integration. BioGPS is freely available at http://biogps.org. GXD is freely available through the MGI web site (www.informatics.jax.org) or directly at www.informatics.jax.org/expression.shtml.     

Thirty-four years of dendrochronological studies in Perú: A review of advances and challenges

The development of tree-ring chronologies of tropical trees allows to reconstruct the environmental history of the Neotropics on extensive temporal and spatial scales. This article presents a historic, state-of -the-art overview/review of dendrochronological studies in Perú, a megadiverse country in its flora, types of climate and ecosystems. We reviewed all available information on dendrochronological studies by assessing scientific articles in indexed, and non-indexed journals as well university thesis repositories. Dendrochronological studies began in the late 1980s and have botanically involved 20 families, 34 genera and 52 tree species. The most studied families are Fabaceae (16 studies), Meliaceae (12), Rosaceae (06), and Bignoniaceae (04), and the most studied genera were Cedrela (13), Polylepis (08) and Prosopis (06). The development of chronologies was mainly applied in climatic reconstructions, forest conservation and management. We identify underrepresentation or sampling gaps regarding climatic and geographic complexity. The high tree diversity of Perú constitutes a natural laboratory to develop tree-ring studies to better understand the growth and functioning of tropical tree species, their interaction with climate, and to derive climate reconstructions during the last centuries. This review aims to contribute to the direction of future dendrochronological studies in Perú.     

Quantifying the health impacts of air pollution under a changing climate—a review of approaches and methodology

Climate change has been predicted to affect future air quality, with inevitable consequences for health. Quantifying the health effects of air pollution under a changing climate is crucial to provide evidence for actions to safeguard future populations. In this paper, we review published methods for quantifying health impacts to identify optimal approaches and ways in which existing challenges facing this line of research can be addressed. Most studies have employed a simplified methodology, while only a few have reported sensitivity analyses to assess sources of uncertainty. The limited investigations that do exist suggest that examining the health risk estimates should particularly take into account the uncertainty associated with future air pollution emissions scenarios, concentration-response functions, and future population growth and age structures. Knowledge gaps identified for future research include future health impacts from extreme air pollution events, interactions between temperature and air pollution effects on public health under a changing climate, and how population adaptation and behavioural changes in a warmer climate may modify exposure to air pollution and health consequences.