Convenient method for detecting 14CO2 in multiple samples: application to rapid screening for mutants.

A procedure is presented for the rapid screening of bacterial colonies to detect mutants unable to produce 14CO2 from a labeled precursor. The method is especially useful for mass screening for mutants that cannot be easily detected by their phenotypic characteristics.     

A simple method for 14CO2 measurement in metabolic experiments]

The determination of the fate of a compound following administration can be performed using the disposition method with 14C-labeled substances, which also allow the measurement of metabolism with CO2 as an expired end product. To substitute the laborious CO2-collection in washing bottles as carbonate a simple instrumentation was built for continuous 14CO2-measurement. The air from the metabolic cage is led in thin layer through a chamber fitted to a foot-monitor, the output of which is online for computation. The instrument is sensitive and calibration is easy.     

Specificity factor of Rubisco: estimation in intact leaves by carboxylation at different CO2/O2 ratios

The specificity factor of Rubisco (S _f) was estimated in intact leaves from the carboxylation of ribulose-1,5-bisphosphate (RuBP) at various CO₂/O₂ ratios. As oxygenation is calculated by the difference of the ¹⁴CO₂ uptake by RuBP in the absence and presence of oxygen, it is important to choose the optimum CO₂/O₂ ratios. At high CO₂ concentration (1,000 cm³ m^?3 and higher) oxygenation consumes less than 50% RuBP but the difference of concentrations of CO₂ at cell walls (C _w) and at the carboxylation centers (C _c) is 2?C5% and the influence of mesophyll resistance (r _md) is of minor importance. To accumulate large endogenous pool of RuBP, the leaves were preilluminated in the CO₂- and O₂-free gas environments for 8 to 10 s. Thereafter the light was switched off and the leaves were flushed with the gas containing different concentrations of ¹⁴CO₂ and O₂. The specificity factor of Rubisco was calculated from the amount of the tracer taken up under different ¹⁴CO₂/O₂ ratios by the exhaustion of the RuBP pool. Application of ¹⁴CO₂ allowed us to discriminate between the CO₂ uptake and the concurrent respiratory CO₂ release which proceeded at the expense of unlabelled intermediates.     

A nondestructive method for the measurement of radioactive 14CO2 in blood

A method for estimation of 14CO2 present in blood and tissular samples is described. It is basically based on the introduction of large amounts of a gas mixture (95% O2, 5% CO2) in the samples which serves to remove the CO2 label by gas dilution. The gas phase is later captured in scintillation vials containing an organic-soluble base that retains the carbon label. The results obtained by means of this methodology show much better recoveries for blood samples than those obtained when the classic acid-diffusion method is used. In addition, it is a very fast procedure which does not alter the pH or protein integrity of the biological sample.     

Pig liver pyruvate carboxylase. The reaction pathway for the carboxylation of pyruvate

1. The reaction pathway for the carboxylation of pyruvate, catalysed by pig liver pyruvate carboxylase, was studied in the presence of saturating concentrations of K(+) and acetyl-CoA. 2. Free Mg(2+) binds to the enzyme in an equilibrium fashion and remains bound during all further catalytic cycles. MgATP(2-) binds next, followed by HCO(3) (-) and then pyruvate. Oxaloacetate is released before the random release, at equilibrium, of P(i) and MgADP(-). 3. This reaction pathway is compared with the double displacement (Ping Pong) mechanisms that have previously been described for pyruvate carboxylases from other sources. The reaction pathway proposed for the pig liver enzyme is superior in that it shows no kinetic inconsistencies and satisfactorily explains the low rate of the ATP[unk][(32)P]P(i) equilibrium exchange reaction. 4. Values are presented for the stability constants of the magnesium complexes of ATP, ADP, acetyl-CoA, P(i), pyruvate and oxaloacetate.     

A device for the liberation and determination of 14CO2

A simple closed system for the serial determination of 14CO2 in small volumes of fluid samples, is described. The device consists of commercially available scintillation vials and silicone tube seals. 14CO2 is selectively liberated by citric acid and absorbed in a scintillation vial by Hyamine. Experiments on the effect of dichloroacetate on pyruvate dehydrogenase activity in rat hindlimbs perfused with [1-14C]pyruvate demonstrate the applicability of the method.     

Reinforcing carbon fixation: CO2 reduction replacing and supporting carboxylation

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Analysis of tricarboxylic acid-cycle metabolism of hepatoma cells by comparison of 14CO2 ratios.

The CO2-ratios method is applied to the analysis of abnormalities of TCA (tricarboxylic acid)-cycle metabolism in AS-30D rat ascites-hepatoma cells. This method utilizes steady-state 14CO2-production rates from pairs of tracers of the same compound to evaluate TCA-cycle flux patterns. Equations are presented that quantitatively convert CO2 ratios into estimates of probability of flux through TCA-cycle-related pathways. Results of this study indicated that the ratio of 14CO2 produced from [1,4-14C]succinate to 14CO2 produced from [2,3-14C]succinate was increased by the addition of glutamine (5 mM) to the medium. An increase in the succinate CO2 ratio is quantitatively related to an increased flux of unlabelled carbon into the TCA-cycle-intermediate pools. Analysis of 14C distribution in [14C]citrate derived from [2,3-14C]succinate indicated that flux from the TCA cycle to the acetyl-CoA-derived carbons of citrate was insignificant. Thus the increased succinate CO2 ratio observed in the presence of glutamine could only result from an increased flux of carbon into the span of the TCA cycle from citrate to oxaloacetate. This result is consistent with increased flux of glutamine to alpha-oxoglutarate in the incubation medium containing exogenous glutamine. Comparison of the pyruvate CO2 ratio, steady-state 14CO2 production from [2-14C]pyruvate versus [3-14C]pyruvate, with the succinate 14CO2 ratio detected flux of pyruvate to C4 TCA-cycle intermediates in the medium containing glutamine. This result was consistent with the observation that [14C]aspartate derived from [2-14C]pyruvate was labelled in C-2 and C-3. 14C analysis also produced evidence for flux of TCA-cycle carbon to alanine. This study demonstrates that the CO2-ratios method is applicable in the analysis of the metabolic properties of AS-30D cells. This methodology has verified that the atypical TCA-cycle metabolism previously described for AS-30D-cell mitochondria occurs in intact AS-30D rat hepatoma cells.     

A simplified method for assaying micromolar quantities of CO2

• 1.1. A rapid and inexpensive method is described for the determination of micromolar quantities of CO₂. which is well suited for infrequent analysis of 50 or fewer samples, and which lends itself for use as an undergraduate laboratory exercise.
• 2.2. The limits of resolution without elaborate precautions during sample preparation are 6 × 10⁻⁷ equiv, but simple modifications would yield a resolution of ca. 1 × 10⁻⁸ equiv.
• 3.3. The method involves placing a small fluid sample (10–100μ1) in the center well of a modified Conway type microdiffusion dish, driving off the CO₂ via acidification and trapping the released carbon dioxide in barium hydroxide located within the chambers middle well.
• 4.4. The quantity of CO₂ captured is determined by back titration, and bicarbonate levels extrapolated by application of the Henderson-Hasselbalch equation.

     

A convenient method for detecting sulphate-reducing bacteria

Sulphate-reducing bacterial cells, after addition of sodium hydroxide, showed a pink colour under a visible light microscope. This phenomenon is suggested as a test for sulphate-reducing bacteria.     

A microchemical method for detecting antifungal substances

Summary A microchemical method for detecting inhibitors of fungal grwoth has been devised. The procedure involves the determination of mycelium production by use of acidified potassium dichromate. The method is rapid, reproducible and is sensitive to the antifungal antibiotic, actidione, in concentrations of less than 0.10 g./ml. when Fusarium oxysporum f. cubense is used as the test organism.Agronomy Paper No. 450. This work was supported in part by a grant from the United Fruit Company, Boston, Massachusetts.     

A simple method for detecting heparinase-producing bacteria

A simple method for detecting heparinase-producing bacteria is described. The method is based on the metachromatic reaction between heparin and toluidine blue. Though developed primarily for Bacteroides spp., the method should find application in the detection of other aerobic and anaerobic heparinase-producing bacteria, without the need for large amounts of media and expensive spectrophotometric equipment.     

Anaerobic degradation of phenol via carboxylation to 4-hydroxybenzoate: in vitro study of isotope exchange between 14CO2 and 4-hydroxybenzoate

Extracts of denitrifying bacteria grown anaerobically with phenol and nitrate catalyzed an isotope exchange between ¹⁴CO₂ and the carboxyl group of 4-hydroxybenzoate. This exchange reaction is ascribed to a novel enzyme, phenol carboxylase, initiating the anaerobic degradation of phenol by para-carboxylation to 4-hydroxybenzoate. Some properties of this enzyme were determined by studying the isotope exchange reaction. Phenol carboxylase was rapidly inactivated by oxygen; strictly anoxic conditions were essential for preserving enzyme activity. The exchange reaction specifically was catalyzed with 4-hydroxybenzoate but not with other aromatic acids. Only the carboxyl group was exchanged; [U-¹⁴C]phenol was not exchanged with the aromatic ring of 4-hydroxybenzoate. Exchange activity depended on Mn²⁺ and inorganic phosphate and was not inhibited by avidin. Ortho-phosphate could not be substituted by organic phosphates nor by inorganic anions; arsenate had no effect. The pH optimum was between pH 6.5–7.0. The specific activity was 100 nmol ¹⁴CO₂ exchange · min^-1 · mg^-1 protein. Phenol grown cells contained 4-hydroxybenzoyl CoA synthetase activity (40 nmol · min^-1 · mg^-1 protein). The possible role of phenol carboxylase and 4-hydroxybenzoyl CoA synthetase in anaerobic phenol metabolism is discussed.     

A rapid method for detecting fungi-toxic substances

A simple and rapid technique is reported for the preliminary screening of fungi-toxic extracts/samples by direct spotting onto silica gel plates and subsequent over-spraying with a fungal spore suspension. After incubation fungi-toxicity is indicated by a growth inhibition zone, the area of which is related to the concentration of the sample.B.K. Rana and V. Taneja are with the Department of Biochemistry. Faculty of Science, Banaras Hindu University, Varanasi 221005, India; U.P. Singh is with the Department of Mycology and Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi 221005, India.