Interfacing systems biology and synthetic biology

A report of BioSysBio 2009, the IET conference on Synthetic Biology, Systems Biology and Bioinformatics, Cambridge, UK, 23-25 March 2009.     

Small RNA biology is systems biology

During the last decade small regulatory RNA (srRNA) emerged as central players in the regulation of gene expression in all kingdoms of life. Multiple pathways for srRNA biogenesis and diverse mechanisms of gene regulation may indicate that srRNA regulation evolved independently multiple times. However, small RNA pathways share numerous properties, including the ability of a single srRNA to regulate multiple targets. Some of the mechanisms of gene regulation by srRNAs have significant effect on the abundance of free srRNAs that are ready to interact with new targets. This results in indirect interactions among seemingly unrelated genes, as well as in a crosstalk between different srRNA pathways. Here we briefly review and compare the major srRNA pathways, and argue that the impact of srRNA is always at the system level. We demonstrate how a simple mathematical model can ease the discussion of governing principles. To demonstrate these points we review a few examples from bacteria and animals.     

The evolution of molecular biology into systems biology

Systems analysis has historically been performed in many areas of biology, including ecology, developmental biology and immunology. More recently, the genomics revolution has catapulted molecular biology into the realm of systems biology. In unicellular organisms and well-defined cell lines of higher organisms, systems approaches are making definitive strides toward scientific understanding and biotechnological applications. We argue here that two distinct lines of inquiry in molecular biology have converged to form contemporary systems biology.     

Subatomic biology: electronic biology, biosemiconductivity]

The author gives a critical and hystorical review of the existing in biology theories which on the molecular and electronic levels explain a number of mechanisms of vital phenomena such as excitation, muscle contraction etc. The author discusses in the hystorical aspect the problem of formation of electronic and biological semi-conductivity (as the author names it) called to explain the vital mechanisms. He shows is which way this theory can explain the process of excitation.     

《生物课程标准》和《生物教学大纲》的比较

2001年教育部颁布的《生物课程标准》是新世纪我国初中生物教学的第一指导性文件。它和新中国成立以来的《生物教学大纲》相比,在许多方面有新的突破。本文着重对《生物课程标准》和《生物教学大纲》在课程目标、内容和体系方面进行比较。     

Reproductive biology in the era of genomics biology

Current and emerging technologies in reproductive biology, including assisted reproductive technologies and animal cloning, are discussed in the context of the impact of genomics era biology. The discussion focuses on the endocrinology associated with establishment and maintenance of pregnancy, fetal-placental development, lactation, and neonatal survival. Various aspects of uterine biology, including development during the neonatal period and function in adult females, are discussed with respect to reproductive efficiency. It is clear that combining strategies for use of conventional animal models for studying the reproductive system with new genomics technologies will provide exceptional opportunities in discovery research involving data integration and application of functional genomics to benefit animal agriculture and the biomedical community. New and emerging biotechnologies and comparative genomics approaches will greatly advance our understanding of genes that are critical to development of the reproductive system and to key events at each stage of the reproductive cycle of females and males.     

生物学的新军——合成生物学

合成生物学是一个新兴而极具研究前景的领域．旨在通过将多种天然或人工设计的生物学元件进行合理组合,创造出重构的或非天然的生物系统。综述了合成生物学这一新兴学科的核心理念、研究内容以及与相关学科的联系,详细介绍了J．CraigVenter研究小组所合成的“人造生命”,并展望了合成生物学广阔的发展前景和所面临的问题。     

Cell biology

A selection of World Wide Web sites relevant to papers published in this issue of Current Opinion in Plant Biology.     

Seed biology

Seed biology is an intensive area of study,a reflection of the significance of seeds for several scientific areas.From an evolutionary perspective,the ability of plants to make seeds has conf erred major selective advantages,accounting,in part,for the success of seed plants as the largest and most species-rich group of land plants.The seed habit facilitates fertilization in non-aqueous environments,provides a level of physical and biological protect!on for the female gametophyte and embryo,allows for the massive accumulation of storage proteins,lipids,and/or carbohydrates in the embryo and/or endosperm to serve as a nutrient reserve for the germinating seed and developing seedling,and permits the embryo to remain in a developmentally arrested and metabolically quiescent state until environ mental conditions permit germination to occur(Steeves 1983).     

Cell biology

A selection of interesting papers that were published in the two months before our press date in major journals most likely to report significant results in cell biology.