Adaptive strategies and life history characteristics in a warming climate: Salmon in the Arctic?

In the warming Arctic, aquatic habitats are in flux and salmon are exploring their options. Adult Pacific salmon, including sockeye (Oncorhynchus nerka), coho (O. kisutch), Chinook (O. tshawytscha), pink (O. gorbuscha) and chum (O. keta) have been captured throughout the Arctic. Pink and chum salmon are the most common species found in the Arctic today. These species are less dependent on freshwater habitats as juveniles and grow quickly in marine habitats. Putative spawning populations are rare in the North American Arctic and limited to pink salmon in drainages north of Point Hope, Alaska, chum salmon spawning rivers draining to the northwestern Beaufort Sea, and small populations of chum and pink salmon in Canada’s Mackenzie River. Pacific salmon have colonized several large river basins draining to the Kara, Laptev and East Siberian seas in the Russian Arctic. These populations probably developed from hatchery supplementation efforts in the 1960’s. Hundreds of populations of Arctic Atlantic salmon (Salmo salar) are found in Russia, Norway and Finland. Atlantic salmon have extended their range eastward as far as the Kara Sea in central Russian. A small native population of Atlantic salmon is found in Canada’s Ungava Bay. The northern tip of Quebec seems to be an Atlantic salmon migration barrier for other North American stocks. Compatibility between life history requirements and ecological conditions are prerequisite for salmon colonizing Arctic habitats. Broad-scale predictive models of climate change in the Arctic give little information about feedback processes contributing to local conditions, especially in freshwater systems. This paper reviews the recent history of salmon in the Arctic and explores various patterns of climate change that may influence range expansions and future sustainability of salmon in Arctic habitats. A summary of the research needs that will allow informed expectation of further Arctic colonization by salmon is given.     

Determining the climate impact of food for use in a climate tax—design of a consistent and transparent model

The International Journal of Life Cycle Assessment - The aim of this study was to determine transparent food carbon footprint values for use in a climate tax, using a consistent methodology across...     

Modèle de mélange et analyse comparative des traits démographiques des poissons: Mixture models and comparative analysis of life history traits of Teleost fishes

The comparative approach in biology is used to investigate the attributes of actual species. Differences between them are used to formulate adaptive hypotheses of life history, morphology, demography, etc. Difficulties arise from the phylogenetic heritage: species are not independent and neglecting this fact can lead to inaccurate results. Fishing can have important effects but usually they are mixed with other variations such as environmental ones. Single species studies cannot succeed completely in analysing the effect of fishing. To disentangle them from orher fluctuations, we are led to the use of a comparative approach. Thus, we need to account for phylogenetic links between populations. In this paper we propose a new family of models, which allows us to split life history traits into parts.     

Local adaptations of life‐history traits of a Drosophila parasitoid,Leptopilina boulardi: does climate drive evolution?

1. Climate is an important source of selection on life histories, and local adaptations to climate have been described in several cline studies. Temperature is the main climatic factor that has been considered as an agent of selection, whereas other factors may vary with it, such as precipitation. 2. We compared life‐history traits of five populations of Leptopilina boulardi, a Drosophila parasitoid, originating from contrasting climates. Referring to cline studies, we hypothesised shorter lifespan, earlier reproduction, and lower lipid content in populations from the hottest and driest areas if life histories have been selected in response to temperature and/or humidity. 3. Our results are opposite to these predictions. Females from humid and mild climates invested more in early reproduction and lived for fewer days than females from dry and hot areas, which were synovigenic (i.e. they matured additional eggs during adult life) and able to synthesise lipids during adult life. 4. We suggest that life histories are more adapted to host distribution than to climatic factors. Drosophila patches are more abundant in the humid area, allowing the parasitoids to spend less energy and time finding hosts. This may result in selection for early reproduction traded‐off against longevity. In the hot and dry climate, females have to fly large distances to find host patches. Synovigeny, a long lifespan, lipogenesis, and high dispersal ability may be adaptive there. This is the first time that between‐population differences in the ability to synthesise lipids have been described in parasitoids.     

Cone packing model — a geometrical approach to coordination and organometallic chemistry of lanthanides and actinides

By projection of the ligands to a unit sphere centred at the metal ion, steric effects, both local and overall, can be studied quantitatively in terms of solid angle factor (SAF), fan angle (FA), coordination vector, gap and hole. The packing saturation rule and the packing centre rule have been determined by treatment of more than 400 structures of lanthanide and actinide coordination and organometallic compounds. A ligand packing model was thus adopted with cones joined at the same apex.‘Coordination Saturation’ in f-block chemistry was clarified to be saturation in coordination space, implying an equilibrium between bonding and steric effects. Molecular structures could be simulated on the basis of a uniform packing principle. The cone packing model has been applied to inorganic preparation, synergistic extraction and structure prediction. These predictions have been clearly substantiated experimentally, and the results are reported.A dynamic packing model was also suggested to study the reaction pathways by simulating the relative positions during the reaction process and the size and shape of holes, which correspond to the reaction areas in the coordination sphere. Lewis base association and dissociation, and the metal- carbon bond thermolysis of structural pattern MCp₃L were explained as examples.     

Bacteriophage lambda overcomes a perturbation in its host–viral genetic network through mutualism and evolution of life history traits*

An important driver of evolution in viruses is natural selection to optimize the use of their hosts’ genetic network. To learn how viruses respond to this pressure, we disrupted the genetic network of Escherichia coli to inhibit replication of its virus, bacteriophage lambda, and then observed how λ evolved to compensate. We deleted E. coli's dnaJ gene, which lambda uses to initiate DNA replication. Lambda partially restored its ability to reproduce with just two adaptive mutations associated with genes J and S. The location of the mutations was unexpected because they were not in genes that directly interact with DnaJ, rather they affected seemingly unrelated life history traits. A nonsynonymous J mutation increased lambda's adsorption rate and an S regulatory mutation delayed lysis timing. Lambda also recovered some of its reproductive potential through intracellular mutualism. This study offers two important lessons: first, viruses can rapidly adapt to disruptive changes in their host's genetic network. Second, organisms can employ mechanisms thought to operate at the population scale, such as evolution of life history traits and social interactions, in order to overcome hurdles at the molecular level. As life science research progresses and new fields become increasingly specialized, these results remind us of the importance of multiscale and interdisciplinary approaches to understand adaptation.     

A model of a MAPK•substrate complex in an active conformation: a computational and experimental approach

The mechanisms by which MAP kinases recognize and phosphorylate substrates are not completely understood. Efforts to understand the mechanisms have been compromised by the lack of MAPK-substrate structures. While MAPK-substrate docking is well established as a viable mechanism for bringing MAPKs and substrates into close proximity the molecular details of how such docking promotes phosphorylation is an unresolved issue. In the present study computer modeling approaches, with restraints derived from experimentally known interactions, were used to predict how the N-terminus of Ets-1 associates with ERK2. Interestingly, the N-terminus does not contain a consensus-docking site ((R/K)_2-3-X_2-6-Φ_A-X-Φ_B, where Φ is aliphatic hydrophobic) for ERK2. The modeling predicts that the N-terminus of Ets-1 makes important contributions to the stabilization of the complex, but remains largely disordered. The computer-generated model was used to guide mutagenesis experiments, which support the notion that Leu-11 and possibly Ile-13 and Ile-14 of Ets-1 1-138 (Ets) make contributions through binding to the hydrophobic groove of the ERK2 D-recruiting site (DRS). Based on the modeling, a consensus-docking site was introduced through the introduction of an arginine at residue 7, to give the consensus ⁷RK-X₂-Φ_A-X-Φ_B ¹³. This results in a 2-fold increase in k _cat/K _m for the phosphorylation of Ets by ERK2. Similarly, the substitution of the N-terminus for two different consensus docking sites derived from Elk-1 and MKK1 also improves k _cat/K _m by two-fold compared to Ets. Disruption of the N-terminal docking through deletion of residues 1-23 of Ets results in a 14-fold decrease in k _cat/K _m, with little apparent change in k _cat. A peptide that binds to the DRS of ERK2 affects K _m, but not k _cat. Our kinetic analysis suggests that the unstructured N-terminus provides 10-fold uniform stabilization of the ground state ERK2•Ets•MgATP complex and intermediates of the enzymatic reaction.     

Mechanobiology of soft skeletal tissue differentiation—a computational approach of a fiber-reinforced poroelastic model based on homogeneous and isotropic simplifications

The material properties of multipotent mesenchymal tissue change dramatically during the differentiation process associated with skeletal regeneration. Using a mechanobiological tissue differentiation concept, and homogeneous and isotropic simplifications of a fiber-reinforced poroelastic model of soft skeletal tissues, we have developed a mathematical approach for describing time-dependent material property changes during the formation of cartilage, fibrocartilage, and fibrous tissue under various loading histories. In this approach, intermittently imposed fluid pressure and tensile strain regulate proteoglycan synthesis and collagen fibrillogenesis, assembly, cross-linking, and alignment to cause changes in tissue permeability (k), compressive aggregate modulus (H_A), and tensile elastic modulus (E). In our isotropic model, k represents the permeability in the least permeable direction (perpendicular to the fibers) and E represents the tensile elastic modulus in the stiffest direction (parallel to the fibers). Cyclic fluid pressure causes an increase in proteoglycan synthesis, resulting in a decrease in k and increase in H_A caused by the hydrophilic nature and large size of the aggregating proteoglycans. It further causes a slight increase in E owing to the stiffness added by newly synthesized type II collagen. Tensile strain increases the density, size, alignment, and cross-linking of collagen fibers thereby increasing E while also decreasing k as a result of an increased flow path length. The Poisson's ratio of the solid matrix, _s, is assumed to remain constant (near zero) for all soft tissues. Implementing a computer algorithm based on these concepts, we simulate progressive changes in material properties for differentiating tissues. Beginning with initial values of E=0.05 MPa, H_A=0 MPa, and k=1×10^–13 m⁴/Ns for multipotent mesenchymal tissue, we predict final values of E=11 MPa, H_A=1 MPa, and k=4.8×10^–15 m⁴/Ns for articular cartilage, E=339 MPa, H_A=1 MPa, and k=9.5×10^–16 m⁴/Ns for fibrocartilage, and E=1,000 MPa, H_A=0 MPa, and k=7.5×10^–16 m⁴/Ns for fibrous tissue. These final values are consistent with the values reported by other investigators and the time-dependent acquisition of these values is consistent with current knowledge of the differentiation process.     

Testing of life history traits of a soilborne pathogen in vitro: Do characteristics of oospores change according the strains of Aphanomyces euteiches and the host plant infected by the pathogen?

Aphanomyces euteiches is a polyphagous, homothallic soilborne pathogen producing asexual (zoospores) and sexual (oospores) spores. Even if oospores are essential for disease development and survival, to date, no study has focused on the production rates of oospores or the quality of the offspring produced by oospores. In this study, a nonabrasive oospore extraction method from infected roots of leguminous species (pea, faba bean and vetch) was developed. This methodology includes steps of grinding and filtration. The quality of oospores (viable, dormant and dead) was assessed with tetrazolium bromide staining, and germination of oospores was tested using exudates of peas, faba bean and vetch. The average yield of the extraction method was approximately 21%. Staining revealed some differences between strains and between leguminous species. The germination percentage of oospores extracted from pea, faba bean and vetch was 25%, 62% and 70%, respectively, and a significant difference was observed according to the origin of A. euteiches‐inoculated strains. Application of exudates seems to stimulate the germination of oospores (2% for the control, 18% for pea exudates and 1% for vetch exudates). Differences observed between A. euteiches strains and leguminous species indicate that more knowledge concerning the biology of oospores is needed. This will help to better estimate evolution process of the pathogen and manage resistance and crop successions.     

Study of a specific lignin model: γ-oxidation and how it influences the hydrolysis efficiency of alcohol-aldehyde dehydrogenation copolymers

Six coniferyl alcohol-coniferaldehyde dehydrogenation copolymers (DHcoPs) were synthesized in order to determine the influence of an increased number of aldehyde functions on hydrolysis. After heterogeneous hydrolysis using acidic Montmorillonite K10 clay, the DHcoPs were thioacidolyzed and analyzed by gel permeation chromatography (GPC). Comparison of the thioacidolyzed products, with and without the hydrolysis step, showed that there was a greater proportion of condensation reaction in the absence of aldehyde. When the coniferaldehyde content in the initial synthetic mixture was more than 30% (w/w), only a low fraction of condensed products was generated during the K10 clay hydrolysis step. This suggests that condensation pathways are mainly due to the alcohol present in the γ-position in the DHcoPs. Investigation of the reactivity and the potential condensation of aldehyde and alcohol monomers under hydrolysis conditions showed the important conversion of coniferyl alcohol and conversely the stability of coniferaldehyde.     

Fertility and mortality patterns of captive Bornean and Sumatran orangutans: is there a species difference in life history?

Across broad taxonomic groups, life history models predict that increased ecological predictability will lead to conservative investment in reproductive effort. Within species, however, organisms are predicted to have increased reproductive rates under improved environmental conditions. It is not clear how these models apply to closely-related species. In this paper, we examine predictions from these models as applied to variability in reproductive rates between the two species of orangutans, Pongo pygmaeus (Bornean) and Pongo abelii (Sumatran). Orangutans exhibit characteristics of a "slow" life history strategy with large bodies, late age at maturity, low reproductive rates, and long lifespan. Recently, researchers proposed that Sumatran orangutans may have an even slower life history than Bornean orangutans as a result of ecological and genetic differences (Wich et al., 2004). We examined this hypothesis by studying important aspects of life history of both species under conditions of relative ecological stability, in captivity. In this large dataset, there were no significant species differences in age of first or last reproduction, completed fertility, perinatal and postnatal mortality, or female longevity. Bornean orangutans in captivity did have significantly longer interbirth intervals, and male Bornean orangutans had higher survival past maturity. Our results do not support the hypothesis that selection has led to decreased reproductive effort under conditions of increased habitat quality in Sumatra (Wich et al., 2004), and instead suggest that phenotypic flexibility may be particularly important in explaining differences between closely related species.     

Do differences in life‐history traits and the timing of peak mating activity between host‐associated populations of Chilo suppressalis have a genetic basis?

The development of host races, genetically distinct populations of the same species with different hosts, is considered to be the initial stage of ecological speciation. Ecological and biological differences consistent with host race formation have been reported between water‐oat and rice‐associated populations of Chilo suppressalis. In order to confirm whether these differences have a genetic basis, we conducted experiments to determine the extent to which various life‐history traits and the time of peak mating activity of these populations were influenced by the species of host plant larvae were raised on. Individuals from each population were reared for three consecutive generations on either water‐oat fruit pulp or rice seedlings. Descendants of both populations had higher larval survival rates, shorter larval developmental periods, higher pupal weight, and longer adult forewings, when reared on water‐oats than when reared on rice. The time of peak of mating activity differed between the descendants of each population, irrespective of whether they were raised on water‐oats or rice. These results indicate that although some life‐history traits of host‐associated populations of C. suppressalis are influenced by the host plant larvae are raised on, time of peak mating activity is not. Because it is a stable, objective, phenotypic trait, further research on difference in the time of peak mating activity between host‐associated populations of C. suppressalis should be conducted to clarify the mechanism responsible for host race formation in this species.     

Effects of temperature and drought on early life stages in three species of butterflies: Mortality of early life stages as a key determinant of vulnerability to climate change?

Anthropogenic climate change poses substantial challenges to biodiversity conservation. Well‐documented responses include phenological and range shifts, and declines in cold but increases in warm‐adapted species. Thus, some species will suffer while others will benefit from ongoing change, although the biological features determining the prospects of a given species under climate change are largely unknown. By comparing three related butterfly species of different vulnerability to climate change, we show that stress tolerance during early development may be of key importance. The arguably most vulnerable species showed the strongest decline in egg hatching success under heat and desiccation stress, and similar pattern also for hatchling mortality. Research, especially on insects, is often focussed on the adult stage only. Thus, collating more data on stress tolerance in different life stages will be of crucial importance for enhancing our abilities to predict the fate of particular species and populations under ongoing climate change.     

Nomadic behaviour and colony fission in a cooperative spider: life history evolution at the level of the colony?

The concept of colony-level life history evolution is introduced for the cooperative spiders by describing the life cycle and demography of Atbuhna binotata (Araneae: Dictynidae), a species living in groups containing up to several dozen adult females plus their offspring. In a life cycle remarkably similar to that of army ants, the colonies of A binotata were found to reproduce by fission and to alternate nomadic and sedentary phases in tight association with their internal demography. Colonies of other cooperative spiders, on the other hand, remain stationary as they grow for a number of generations before producing propagules that are relatively small subsets of the maternal colony. It is suggested that A. binotata!% peculiar life cycle may have unfolded as a consequence of the two-dimensional architecture of its nests. Expanding two-dimensional nests may fragment more easily than the three-dimensional nests characteristic of other species. A long distance group migration or nomadic phase, described here for the first time for a spider, may have followed as a mechanism to cope with potential disadvantages of fission while selecting for strict synchronization of individual life cycle stages within the nests. It is shown, however, that, as in other cooperative spiders, A. binotatd% sex ratio is also highly female biased. The theoretical implications of biased sex ratios in a species with fissioning colonies are briefly discussed.     

Competition and species coexistence in a metapopulation model: Can fast asymmetric migration reverse the outcome of competition in a homogeneous environment?

We investigate whether asymmetric fast migration can modify the predictions of classical competition theory and, in particular revert species dominance. We consider a model of two species competing for an implicit resource on a habitat divided into two patches. Both patches are connected through constant migration rates and in each patch local dynamics are driven by a Lotka-Volterra competition system.Local competition is asymmetric with the same superior competitor in both patches. Migration is asymmetric, species dependent and fast in comparison to local competitive interactions. The species and patches are taken to be otherwise similar: in both patches we assume the same carrying capacities for both species, and the same growth rates and pair-wise competition coefficients for each species.We show that global dynamics can be described by a classical Lotka-Volterra competition model. We found that by modifying the ratio of intraspecific migration rates for both species all possible combinations of global species relative dominance can be achieved. We find specific conditions for which the local superior competitor is globally excluded. This is to our knowledge the first study showing that fast asymmetric migration can lead to inferior competitor dominance in a homogeneous environment. We conclude that disparity of temporal scales between migration and local dynamics may have important consequences for the maintenance of biodiversity in spatially structured populations.     

Identification procedure in a model of single fibre action potential – Part II: Global approach and experimental results

The present paper describes a global procedure for estimating all the synthesis parameters that generate a single fibre action potential (SFAP) in the Dimitrov–Dimitrova (D–D) convolutional model. We call this inverse problem Identification Procedure, and it is presented in two parts, this paper being the second. The procedure incorporates the candidate pair (CP) method developed in Part I, which provides the values of radial distance r and fibre diameter d of the simulated SFAP that best matches a potential under study. The CP-method required prior knowledge of all the excitation parameters. However, since the Identification Procedure makes no assumption about the excitation, multiple combinations of the synthesis parameters result in very similar SFAPs whose shape is close the signal under study. Analysis of the possible combinations reveals that r and d can be modelled as two jointly Gaussian random variables. The interest of the Identification Procedure is that, for a certain SFAP, it provides estimates of r and d, along with estimates of different parameters that determine the IAP waveform. Moreover, the procedure is able to determine the degree of error that accompanies the estimation of r and d.     

Human pre-α-inhibitor: isolation from a by-product of industrial scale plasma fractionation and structural analysis of its H3 heavy chain

Pre-α-inhibitor (PαI) is a serine proteinase inhibitor from human plasma. It comprises bikunin (BK) responsible for antiprotease activity, covalently linked to a heavy chain H3. Here we describe its isolation from a side fraction of an industrial preparation of plasma clotting factors. By using a highly specific polyclonal antiserum prepared from rabbit immunized with a H3P polypeptide obtained in a bacterial expression system, we were able to identify the fractions containing PαI. Then, taking advantage of the differential affinity of the members of the inter-α-inhibitor family (IαI) for heparin-Sepharose and blue-Sepharose, we isolated PαI. Its specific antitryptic activity was 580 IU/g, higher than that of IαI: 420 IU/g. Its M_r, determined by sodium dodecyl sulfate polyacrylamide gel electrophoresis, with or without prior reduction, was 130 000. Its peptide chains were identified by N-terminal sequencing. The H3 heavy chain was isolated from PαI by alkaline dissociation and anion-exchange chromatography. Its electrophoretic mobility was compared to that of the H1 and H2 heavy chains of IαI. In reducing conditions, it was quite similar to that of H2 (M_r 85 000) but clearly different from that of H1 (M_r 78 000). Thus, the so-determined apparent M_r of H3 was overestimated since its molecular mass determined by MALDI-TOF was 74 100. This result agrees with the proposed structure for H3. Indeed, by carbohydrate analysis and PNGase F digestion, we demonstrate that the two potential N-glycosylation sites present in the core-protein (theoretical mass: 69 454) are really occupied by two N-glycans, probably of biantennary type.     

It is a matter of timing: asynchrony during pollen development and its consequences on pollen performance in angiosperms—a review

Functional pollen is needed to successfully complete fertilization. Pollen is formed inside the anthers following a specific sequence of developmental stages, from microsporocyte meiosis to pollen release, that concerns microsporocytes/microspores and anther wall tissues. The processes involved may not be synchronous within a flower, an anther, and even a microsporangium. Asynchrony has been barely analyzed, and its biological consequences have not been yet assessed. In this review, different processes of pollen development and lifetime, stressing on the possible consequences of their differential timing on pollen performance, are summarized. Development is usually synchronized until microsporocyte meiosis I (occasionally until meiosis II). Afterwards, a period of mostly asynchronous events extends up to anther opening as regards: (1) meiosis II (sometimes); (2) microspore vacuolization and later reduction of vacuoles; (3) amylogenesis, amylolysis, and carbohydrate inter-conversion; (4) the first haploid mitosis; and (5) intine formation. Asynchrony would promote metabolic differences among developing microspores and therefore physiologically heterogeneous pollen grains within a single microsporangium. Asynchrony would increase the effect of competition for resources during development and pollen tube growth and also for water during (re)hydration on the stigma. The differences generated by developmental asynchronies may have an adaptive role since more efficient pollen grains would be selected with regard to homeostasis, desiccation tolerance, resilience, speed of (re)hydration, and germination. The performance of each pollen grain which landed onto the stigma will be the result of a series of selective steps determined by its development, physiological state at maturity, and successive environmental constrains.