Assessing genetic diversity in Ziziphus jujuba ‘Jinsixiaozao’ using morphological and microsatellite (SSR) markers

Ziziphus jujuba ‘Jinsixiaozao’ is one of the most elite Chinese jujube variety with a long cultivation history. There are many different types and newly developed accessions of ‘Jinsixiaozao’ reported, however the names are in chaotic. For the accurate identification of the accessions and estimating the genetic diversity, the diversity and relationships of the 45 ‘Jinsixiaozao’ accessions were evaluated by 49 morphological traits and 24 highly polymorphic genomic SSR primers. The UPGMA dendrogram based on morphological traits separated the accessions into four major groups with Euclidean distance ranging from 4.26 to 12.26. Six of 24 SSR primers produced polymorphic patterns with a total of 17 alleles. Cluster analysis using UPGMA and Jaccard‘s coefficient grouped the accessions into eight groups. The SSR markers failed to distinguish the majority of the analyzed accessions, and a negative percentage of variation was partitioned. These results indicated low genetic diversity among the collected accessions. The mantel test revealed a weak negative correlation (r = −0.051) between the morphological dissimilarity matrix and that based on SSR markers.     

Teacher–child interaction quality as a function of classroom age diversity and teachers’ beliefs and qualifications

Data from 332 teachers who participated in the National Center for Research on Early Childhood Education study were used to examine the implications of classroom age diversity in preschool programs for teacher interactions with students in areas of instructional and emotional support, and classroom organization. Teachers in early childhood classrooms with greater age diversity within a school year and who experienced an increase in age diversity across years exhibited less optimal teacher–child interactions. The negative effects of age diversity for teacher–child interactions were only noticeable among teachers with fewer years of education and experience, and among teachers whose views of children were less child-centered. When taken together, results indicate that closer attention should be paid to the consequences of classroom age diversity in preschool and that a multi-year perspective on teachers’ classroom experiences would allow for a more nuanced understanding of the quality of teacher–child interactions.     

‘Random coil’ 1H chemical shifts obtained as a function of temperature and trifluoroethanol concentration for the peptide series GGXGG

Summary Proton chemical shifts of a series of disordered linear peptides (H-Gly-Gly-X-Gly-Gly-OH, with X being one of the 20 naturally occurring amino acids) have been obtained using 1D and 2D ¹H NMR at pH 5.0 as a function of temperature and solvent composition. The use of 2D methods has allowed some ambiguities in side-chain assignments in previous studies to be resolved. An additional benefit of the temperature data is that they can be used to obtain ‘random coil’ amide proton chemical shifts at any temperature between 278 and 318 K by interpolation. Changes of chemical shift as a function of trifluoroethanol concentration have also been determined at a variety of temperatures for a subset of peptides. Significant changes are found in backbone and side-chain amide proton chemical shifts in these ‘random coil’ peptides with increasing amounts of trifluoroethanol, suggesting that caution is required when interpreting chemical shift changes as a measure of helix formation in peptides in the presence of this solvent. Comparison of the proton chemical shifts obtained here for H-Gly-Gly-X-Gly-Gly-OH with those for H-Gly-Gly-X-Ala-OH [Bundi, A. and Wüthrich, K. (1979) Biopolymers, 18, 285–297] and for Ac-Gly-Gly-X-Ala-Gly-Gly-NH₂ [Wishart, D.S., Bigam, C.G., Holm, A., Hodges, R.S. and Sykes, B.D. (1995) J. Biomol. NMR, 5, 67–81] generally shows good agreement for CH protons, but reveals significant variability for NH protons. Amide proton chemical shifts appear to be highly sensitive to local sequence variations and probably also to solution conditions. Caution must therefore be exercised in any structural interpretation based on amide proton chemical shifts.     

Garlic extract as a novel strategy to hasten dormancy release in buds of ‘Anna’ apple trees

A 2-season orchard trial was carried out to verify the effects of garlic extract (GE), as a novel dormancy-breaking substance, at different concentrations; 0, 50, 100, 150 and 200 ml l^− 1 on bud break dormancy and the metabolic alterations in buds of ‘Anna’ apple trees. Water content, total carbohydrates, reducing and total sugars, anthocyanins, total free amino acids, free proline, total indoles and free phenols were analyzed after the application of GE. The obtained results showed that, GE treatments hastened date of floral bud break and increased percentage of bud break, fruit set, total number of fruits and fruit yield per tree. Except for free phenols, GE also increased the abovementioned chemical components in buds. The best results were obtained from the treatment of 150 ml l^− 1 GE. Therefore, it is concluded that the use of GE at 150 ml l^− 1 could be recommended for improving the bud break, growth and yield of apple trees cv. “Anna”.     

Molecular genetic diversity and differentiation of populations of ‘somnus’ passion fruit trees (Passiflora setacea DC): Implications for conservation and pre-breeding

The ‘somnus’ passion fruit tree (Passiflora setacea) is native to the ‘Cerrado’ and ‘Caatinga’ biomes in Brazil and possesses agrobiological and commercial traits of interest. Studies examining the nature of genetic variability in natural populations are important for the utilization of these traits in conservation and breeding programs. In this study, we analyzed 12 populations of P. setacea from different locations distributed in three agro-ecological zones within the Bahia state of Brazil. Eleven ISSR primers and four pairs of RGA primers were used to assay 109 and 49 unique and reproducible loci, of which 108 (99%) and 49 (100%) were polymorphic. Although the level of genetic diversity in ‘somnus’ passion fruit trees was greater than that observed for other species of the same genus, preferential collection of certain populations, such as those located in the cities of Vitória da Conquista and Licinio de Almeida, is important when considering the fact that ‘somnus’ passion fruit trees occur in areas that are highly disturbed. This disturbance is primarily due to the deployment of pasture, predatory extraction and accelerated urban expansion. An analysis of molecular variance revealed a balance between the estimated genetic variation within and among populations. These data may be useful for developing strategies for preservation of this species in the Cerrado.     

Calculation of the Raman frequencies as a function of pressure in the solid phases II and III (III’) of benzene

We calculate here the Raman frequencies of the lattice modes A(A _g ), B(B _2g ) and C(B _1g B _3g ) as a function of pressure at room temperature for the solid phases (II, III and III’) of benzene. This calculation is performed using volume data through the mode Grüneisen parameter. It is found that our calculated frequencies of those lattice modes increase with increasing pressure, as expected. Calculated frequencies are in good agreement with the measurements of the three lattice modes for the solid phases studied in benzene.     

Endangered species diversity ‘hot spots’ in Russia and centers of endemism

Geographic distributions of all 125 endangered and threatened animals and all 70 endangered flowering plant species were compiled and mapped by administrative territory (republics, states, provinces, and districts) of the Russian Federation, based on distributional data in the official Red Data Books of the R.S.F.S.R. [Eliseev et al. (eds) (1985) Red Book of the R.S.F.S.R.: Animals. Rosleskhoz Publishing, Moscow; Golovanov et al. (eds). (1988). Red Book of the R.S.F.S.R.: Plants. Rosagprom Publishing, Moscow]. Territories were ranked using an algorithm that gives highest rank to the single territory with the greatest number of endangered species present, then iteratively assigns the next highest rank to the territory containing the greatest number of species not found in a territory of higher rank. This algorithm minimizes the number of territories necessary to include one population of each endangered species, but may designate very low rank to a territory that holds high numbers of endangered species if many of those species are found in a territory of higher rank. When different sets of species were used to determine territory rank with this algorithm the only significant correlation between rank lists was between ranks generated when all species are used and when only species endemic to single territories were used. Mountainous territories on Russia's southern borders held the greatest numbers of endangered species and were highly ranked whether or not species occurring outside of Russia were excluded from the ranking algorithm. The Maritime state, Krasnodar state, Dagestan republic, Sakhalin province and the Jewish province all are centers of endangered species diversity that together contain 50 or more of endangered species for multiple taxonomic groups; this was the Dobson et al. [(1997) Science 275: 550–553] definition of an endangered species hot spot. These are all mountainous territories on Russia's southern border. Precise territorial ranking within the mountainous southern regions of the Southern Far East, Caucasus, and Altai/Sayan regions of southern Siberia was highly influenced by species endemic to single territories.     

Comprehensive analysis of the roles of ‘black’ and ‘gray’ clusters in structure and function of rat β-parvalbumin

Recently we found two highly conserved structural motifs in the proteins of the EF-hand calcium binding protein family. These motifs provide a supporting scaffold for the Ca²⁺ binding loops and contribute to the hydrophobic core of the EF-hand domain. Each structural motif forms a cluster of three amino acids called cluster I (‘black’ cluster) and cluster II (‘grey’ cluster). Cluster I is much more conserved and mostly incorporates aromatic amino acids. In contrast, cluster II includes a mix of aromatic, hydrophobic, and polar amino acids. The ‘black’ and ‘gray’ clusters in rat β-parvalbumin consist of F48, A100, F103 and G61, L64, M87, respectively. In the present work, we sequentially substituted these amino acids residues by Ala, except Ala100, which was substituted by Val. Physical properties of the mutants were studied by circular dichroism, scanning calorimetry, dynamic light scattering, chemical crosslinking, and fluorescent probe methods. The Ca²⁺ and Mg²⁺ binding affinities of these mutants were evaluated by intrinsic fluorescence and equilibrium dialysis methods. In spite of a rather complicated pattern of contributions of separate amino acid residues of the ‘black’ and ‘gray’ clusters into maintenance of rat β-parvalbumin structural and functional status, the alanine substitutions in the cluster I cause noticeably more pronounced changes in various structural parameters of proteins, such as hydrodynamic radius of apo-form, thermal stability of Ca²⁺/Mg²⁺-loaded forms, and total energy of Ca²⁺ binding in comparison with the changes caused by amino acid substitutions in the cluster II. These findings were further supported by the outputs of computational analysis of the effects of these mutations on the intrinsic disorder predisposition of rat β-parvalbumin, which also indicated that local intrinsic disorder propensities and the overall levels of predicted disorder were strongly affected by mutations in the cluster I, whereas mutations in cluster II had less pronounced effects. These results demonstrate that amino acids of the cluster I provide more essential contribution to the maintenance of structuraland functional properties of the protein in comparison with the residues of the cluster II.     

Photosynthesis parameters and activities of enzymes of oxidative stress in two young ‘Chemlali’ and ‘Chetoui’ olive trees under water deficit

The effects of water deficit on photochemical parameters and activities of superoxide dismutase, catalase, ascorbate peroxidase and glutathione reductase were investigated in two olive cultivars differing in drought tolerance — ‘Chemlali’ and ‘Chetoui’. After 30 days without irrigation, leaf water potential fell to −5.5 MPa that was accompanied by a marked decrease in net photosynthesis in ‘Chetoui’ olive cultivar. Maximal efficiency of PSII photochemistry (F_v/F_m) decreased slightly in ‘Chemlali’ (28 %) and substantially in ‘Chétoui’ (47 %). Both cultivars showed a similar decline (about 25 %) in the photochemical quenching coefficient, but only the drought-sensitive olive cultivar exhibited an enhancement (31 %) of non-photochemical fluorescence quenching under water deficit conditions. The quantum yield of electron transport decreased in both olive cultivars. ‘Chemlali’ showed a higher protection against oxidative stress, as judged from the lower levels of the malondialdehyde production. Catalase activity was higher in ‘Chetoui’. Glutathione reductase activity was increased similarly in both olive cultivars under water stress. Ascorbate peroxidase activity was enhanced in ‘Chemlali’ under water stress, but was unaffected in ‘Chetoui’. While, superoxide dismutase activity was inhibited in both cultivars under water stress, but higher activity was detected in ‘Chemlali’. Thus, the ability to increase ascorbate peroxidase and a higher superoxide dismutase activity might be an important attribute linked to the drought tolerance in ‘Chemlali’ olive cultivar.     

Tree diversity,congruence and endemism: Himalaya ‘The land of diversity’

Trees are acknowledged as most valued gift of nature and saviour of earth, enhancing and protecting landscapes, ecosystems and production systems. An authentic database of tree flora missing from local to global scale has immense value. Formulation of conservation and management policies are difficult owing to huge variation in number of species, lack of tree cover and quantification of tree diversity. To endow with a pragmatic groundwork for quantification of tree diversity of IHR, we had published an inventory of 1466 tree species (Angiosperms and Gymnosperms) along with their taxonomically vetted scientific name, distributional range, phenological attributes (leaf persistence and flower colour), use value, congruence, endemism and threatened species. One more database on tree diversity of Western Himalaya was also published with an annotated list of tree flora compiled from unrestricted literature and e-floras related to the regions. The present paper is an attempt to bring out the overall representation of tree flora of IHR, its distributional pattern, congruence, and endemism criterion in Western and Eastern Himalaya along with correlation between the regions as well as states.

     

Subunit interactions in pig heart fumarase—II. Study of tetramer-dimer equilibrium in function of enzyme concentration and temperature

The dissociation of pig fumarase tetramers into two dimers was studied as a function of temperature in the absence of denaturating agents.

• 1.1. At high temperatures a kinetical and structural study of dissociation and reassociation was performed.
• 2.2. At low temperatures fumarase dissociation was induced by limiting the enzyme concentration.

     

‘Endogenous yolk’ as the precursor of a possible fertilization envelope in a crab (Carcinus maenas)

After the egg attachment to a maternal ovigerous seta, the Carcinus maenas embryo is enclosed in a tripartite capsule. The innermost layer (envelope 2) which is also the main part of this capsule, is generally detected after egg-laying and is most probably closely related to the fecondation phenomenon. The precursor material of envelope 2, arising from the egg by a massive and very fast exocytosis process, appears as numerous ring-shaped granules. These granules, originated from numerous cortical vesicles perhaps intercommunicating with each others, are observed early in the ooplasm during oogenesis, These so-called ring-shaped granules seem very identical in form with the disc-shaped granules which are classically described as composing the endogenous or intracysternal yolk of many Decapoda crustacean oocytes. In view of our results the role of these granules, in endogenous yolk formation, is re-examined and discussed.