The freezing rate of freeze-etch specimens for electron microscopy

Experiments on the rapid freezing of freeze-etch sized specimens have shown this rate between 0 and ?100 °C to be approximately 1000 °C/sec. This is much faster than the rate of 100 °C/sec estimated by Moor for specimens cooled in liquid Freon 12.Heat transfer from the rapidly immersed specimen and mount appears to be mainly through forced convection. Such a mechanism would make the initial rate highly variable as it would be sensitive to liquid velocity. If this occurs it will be impossible to obtain consistent results for freezingrate studies unless a stable method is evolved for both injecting and containing the specimen.     

Distribution of mercury, methyl mercury and organic sulphur species in soil, soil solution and stream of a boreal forest catchment

Concentrations of methyl mercury, CH₃Hg (II), total mercury, Hg_tot = CH₃Hg (II) + Hg (II), and organic sulphur species were determined in soils, soil solutions and streams of a small (50 ha) boreal forest catchment in northern Sweden. The CH₃Hg (II)/Hg_tot ratio decreased from 1.2–17.2% in the peaty stream bank soils to 0.4–0.8% in mineral and peat soils 20 m away from the streams, indicating that conditions for net methylation of Hg (II) are most favourable in the riparian zone close to streams. Concentrations of CH₃Hg (II) bound in soil and in soil solution were significantly, positively correlated to the concentration of Hg_tot in soil solution. This, and the fact that the CH₃Hg (II)/Hg_tot ratio was higher in soil solution than in soil may indicate that Hg (II) in soil solution is more available for methylation processes than soil bound Hg (II). Reduced organic S functional groups (Org-S_RED) in soil, soil extract and in samples of organic substances from streams were quantified using S K-edge X-ray absorption near-edge structure (XANES) spectroscopy. Org-S_RED, likely representing RSH, RSSH, RSR and RSSR functionalities, made up 50 to 78% of total S in all samples examined. Inorganic sulphide [e.g. FeS₂ (s)] was only detected in one soil sample out of 10, and in none of the stream samples. Model calculations showed that under oxic conditions nearly 100% of Hg (II) and CH₃Hg (II) were complexed by thiol groups (RSH) in the soil, soil solution and in the stream water. Concentrations of free CH₃Hg⁺ and Hg²⁺ ions in soil solution and stream were on the order of 10^–18 and 10^–32M, respectively, at pH 5. For CH₃Hg (II), inorganic bi-sulphide complexes may contribute to an overall solubility at concentrations of inorganic sulphides higher than 10^–9M, whereas considerably higher concentrations of inorganic sulphides (lower redox-potential) are required to increase the solubility of Hg (II).     

Release of Rhizobium spp. from Tropical Soils and Recovery for Immunofluorescence Enumeration

Limitations associated with immunofluorescence enumeration of bacteria in soil derive largely from the efficiency with which cells can be separated from soil particles and collected on membrane filters for staining. Many tropical soils fix added bacteria tightly, resulting in low recoveries. Eight soils, representative of three of the major soil orders found in the tropics (oxisols, vertisols, and inceptisols), were tested for recovery of added Rhizobium strains. All except one Hawaiian andept (Typic Eutrandept) yielded recoveries ranging from <1 to 13%. Recovery from the andept was 100%. In soil-sand mixtures, addition of only a small amount of soil caused a dramatic decrease in recovery of added rhizobia. Increasing the soil content of the mixture from 0% (10 g of sand) to 50% (5 g of soil-5 g of sand) reduced recoveries from >90 to <1%. Varying the ionic strength and pH of the extracting solution did not cause marked increases in recovery. Protein solutions, ethylenediaminetetraacetate, and NaHCO₃, on the other hand, improved release of bacteria. We report a modification to the usual membrane filter immunofluorescence procedure which yielded consistently high and reproducible recovery (coefficient of variation, 30%) of rhizobia from several tropical soils. In the modified procedure, partially hydrolyzed gelatin, diluted in ammonium phosphate, was used to suspend the soil. This caused dispersion of the soil and release of the bacteria from soil flocs. The efficiency of recovery of Rhizobium spp. from several tropical and two temperate soils remained high as the content of these soils in soil-sand mixtures was increased from 0 to 100%. The modified membrane filter immunofluorescence procedure was used to follow the growth of a strain of chickpea (Cicer arietinum) Rhizobium in a sterilized oxisol. The results showed a close agreement with viable counts at different stages during the growth cycle. Diluent for the hydrolyzed gelatin also had a marked effect on recovery. The efficiency of release of Rhizobium spp. from an oxisol was in the following order for the diluents used: 0.1 M (NH₄)₂HPO₄ > 0.1 M Na₂HPO₄ = 0.1 M sodium-phosphate-buffered saline (pH 7.2) > 0.2 M NH₄Cl > 0.2 KCl > NaCl = LiCl > water.     

Survival of plant tissue at super-low temperatures v. An electron microscope study of ice in cortical cells cooled rapidly

Experiments were carried out with cortical cells in twig bark of mulberry trees in winter in order to clarify the mechanism of survival at super-low temperatures with rapid cooling and rewarming. Attention was given to the relation between the existence of intracellular ice crystals and survival.

Cortical cells were cooled rapidly by direct immersion into liquid nitrogen or isopentane cooled at various temperatures. After immersion, they were freeze-substituted with absolute ethanol at −78°. They were then embedded, sectioned and examined under the electron microscope for the presence and distribution of cavities left after ice removal.

Cells were found to remain alive and contain no ice cavities when immersed rapidly into isopentane baths kept below −60°. Those cells at intermediate temperatures from −20° to −45°, were almost all destroyed. It was also observed that many ice cavities were contained in the cells immersed rapidly into isopentane baths at −30°. The data seem to indicate that no ice crystals were formed when cooled rapidly by direct immersion into isopentane baths below −60° or into liquid nitrogen.

The tissue sections immersed in liquid nitrogen were rapidly transferred to isopentane baths at temperatures ranging from −70° to −10° before rapid rewarming. There was little damage when samples were held at temperatures below −50° for 10 minutes or below −60° for 16 hours. No cavities were found in these cells. Above −45°, and especially at −30°, however, all cells were completely destroyed even when exposed only for 1 minute. Many ice cavities were observed throughout these cells. The results obtained may be explained in terms of the growth rate of intracellular ice crystals.

     

Effect of soil moisture on bioremediation of chlorophenol-contaminated soil

A chlorophenol-contaminated soil was tested for the biodegradability in a semi-pilot scale microcosm using indigenous microorganisms. More than 90% of 4-chlorophenol and 2,4,6-trichlorophenol, initially at 30 mg kg^–1, were removed within 60 days and 30 mg pentachlorophenol kg^–1 was completely degraded within 140 days. The chlorophenols were degraded more effectively under aerobic condition than under anaerobic condition. Soil moisture had a significant effect with the slowest degradation rate of chlorophenols at 25% in the range of 10–40% moisture content. At 25–40%, the rate of chlorophenol degradation was directly related to the soil moisture content, whereas at 10–25%, it was inversely related. Limited oxygen availability through soil agglomeration at 25% moisture content might decrease the degradation rate of chlorophenols.     

A method for collecting soil percolate and soil solution in the field

Summary A soil-water extractor is described which uses an absorbent sponge material for sampling soil percolate and solution. Good agreement existed between soil extracts (1:5 soil:water) and extracts obtained from the extractor sponge after equilibration at low water tensions (pF 0–2.5) in the range, 0–100 g/g soil (0–1400 g/ml solution) for solute anions (Cl^-, NO₂ ^- and NO₃ ^–, R² > 0.98), and for ammonium ions (NH₄ ⁺, R²=0.93).Percolate was recovered in a field soil in volumes sufficient to permit analysis of constituents. Concentrations of solute Cl^- ions in these percolates were similar to those in the added water and in percolate from a zero-tension lysimeter. Poor relationships were obtained in the field between soil solution extracts from the sponge and 1:10 soil water extracts. For the present, the soil extractor may be used for sampling and monitoring movement of percolate and solute fronts, in the wetter range of soil water content.     

FRACTIONATION OF GELATIN

1. It is possible to fractionate gelatin by means of reprecipitation at 23°C. of a salt-free solution of pH 4.7 into two fractions, one of which is soluble in water at any temperature, and a second one which does not dissolve in water even when heated to 80°C. 2. The proportion of the soluble fraction in gelatin is much greater than of the insoluble one. 3. The insoluble fraction of gelatin does not swell when mixed with water, but it does swell in the presence of acid and alkali which finally dissolve it. 4. Blocks of concentrated gel made by dissolving various mixtures of the soluble and insoluble fractions of gelatin in dilute NaOH swell differently when placed in large volumes of dilute buffer solution pH 4.7 at 5°C. The gel consisting of the insoluble material shows only a trace of swelling, while those containing a mixture of soluble and insoluble swell considerably. The swelling increases rapidly as the proportion of the soluble fraction increases. 5. A 5 per cent gel made up by dissolving the insoluble fraction of gelatin in dilute NaOH loses about 70 per cent of its weight when placed in dilute buffer pH 4.7 at 5°C. A similar gel made up of ordinary gelatin loses only about 20 per cent of its weight under the same conditions. 6. It was not found possible to resynthesize isoelectric gelatin from its components. 7. An insoluble substance similar in many respects to the one obtained by reprecipitation of gelatin is produce on partial hydrolysis of gelatin in dilute hydrochloric acid at 90°C.     

Some aspects of the cation status of soil moisture

Summary A study was made of the effect of soil moisture tension (pF 0–3), regarding the soil moisture status and soil oxygen status as interrelated, on the growth and cation uptake byRaphanus sativus using a tension plate apparatus. A similar study was made usingBrassica sinensis in pots.Results suggested that the tension-plate apparatus would be useful in such studies, whereas the lack of adequate soil moisture control in the pot experiment made this type of method unsuitable.Increasing soil moisture tension resulted in an increase in the cation concentrations of both soil solution and plant material. The dilution and valency effect in the soil solution was demonstrated.The growth response to soil moisture tension was a reflection of changes in moisture status which in turn affected the soil oxygen tension.The value of logK–1/2log [Ca+Mg] in the plant was constant over the soil moisture tension range studied and was a reflection of the characteristic potassium intensity status of the soil solution, defined by pK–1/2p (Ca+Mg) which was also constant. The concentration ratio, K/Ca+Mg, in the plant varied with moisture tension in the same way as the ratio varied in the soil solution and was therefore a reflection of both the soil solution composition and soil moisture tension.The plant reflected the composition of the soil solution and it was concluded that both the adsorption and contact-exchange theories played no significant role in plant ion uptake.     

HYDRATION OF GELATIN IN SOLUTION

1. It was shown that the high viscosity of gelatin solutions as well as the character of the osmotic pressure-concentration curves indicates that gelatin is hydrated even at temperatures as high as 50°C. 2. The degree of hydration of gelatin was determined by means of viscosity measurements through the application of the formula See PDF for Equation. 3. When the concentration of gelatin was corrected for the volume of water of hydration as obtained from the viscosity measurements, the relation between the osmotic pressure of various concentrations of gelatin and the corrected concentrations became linear, thus making it possible to determine the apparent molecular weight of gelatin through the application of van''t Hoff''s law. The molecular weight of gelatin at 35°C. proved to be 61,500. 4. A study was made of the mechanism of hydration of gelatin and it was shown that the experimental data agree with the theory that the hydration of gelatin is a pure osmotic pressure phenomenon brought about by the presence in gelatin of a number of insoluble micellæ containing a definite amount of a soluble ingredient of gelatin. As long as there is a difference in the osmotic pressure between the inside of the micellæ and the outside gelatin solution the micellæ swell until an equilibrium is established at which the osmotic pressure inside of the micellæ is balanced by the total osmotic pressure of the gelatin solution and by the elasticity pressure of the micellæ. 5. On addition of HCl to isoelectric gelatin the total activity of ions inside of the micellæ is greater than in the outside solution due to a greater concentration of protein in the micellæ. This brings about a further swelling of the micellæ until a Donnan equilibrium is established in the ion distribution accompanied by an equilibrium in the osmotic pressure. Through the application of the theory developed here it was possible actually to calculate the osmotic pressure difference between the inside of the micellæ and the outside solution which was brought about by the difference in the ion distribution. 6. According to the same theory the effect of pH on viscosity of gelatin should diminish with increase in concentration of gelatin, since the difference in the concentration of the protein inside and outside of the micellæ also decreases. This was confirmed experimentally. At concentrations above 8 gm. per 100 gm. of H₂O there is very little difference in the viscosity of gelatin of various pH as compared with that of isoelectric gelatin.     

A Method for Detecting Visceral Malformations in Gelatin-Embedded Rat Fetuses Using an Automatic Slicing Apparatus

A method for observing whole rat fetal viscera embedded in gelatin using an automatic slicing apparatus is described. Fetuses were immersed in Bouin's solution. Part of the thoracic and abdominal skin of each fetus was removed, and fetuses were immersed consecutively in sodium bicarbonate 30% in 70% ethanol, gelatin 15% in water, gelatin 30% in water, then embedded in fresh 30% gelatin. The gelatin blocks containing the fetuses were immersed in 10% formalin. After fixation, the block was sliced into 200 μm serial transverse sections using a rotor-slicer at a rotation speed of 120 rpm and a cutting speed of 25 mm/sec. Complete slicing of a single fetus required about 20 min. The advantages of the method presented here include: complete fetal serial sections are produced, thin and uniform sections are obtained easily, viscera can be identified easily, and observation can be carried out at any time after slicing. The method presented can be used to detect whole fetal visceral malformations in developmental toxicity tests.     

Morphology,biomass and nutrient status of fine roots of Scots pine (<Emphasis Type="Italic">Pinus sylvestris</Emphasis>) as influenced by seasonal fluctuations in soil moisture and soil solution chemistry

A field monitoring study was carried out to follow the changes of fine root morphology, biomass and nutrient status in relation to seasonal changes in soil solution chemistry and moisture regime in a mature Scots pine stand on acid soil. Seasonal and yearly fluctuations in soil moisture and soil solution chemistry have been observed. Changes in soil moisture accounted for some of the changes in the soil solution chemistry. The results showed that when natural acidification in the soil occurs with low pH (3.5–4.2) and high aluminium concentration in the soil solution (>3–10 mg l^–1), fine root longevity and distribution could be affected. However, fine root growth of Scots pine may not be negatively influenced by adverse soil chemical conditions if soil moisture is not a limiting factor for root growth. In contrast, dry soil conditions increase Scots pine susceptibility to soil acidification and this could significantly reduce fine root growth and increase root mortality. It is therefore important to study seasonal fluctuations of the environmental variables when investigating and modelling cause-effect relationships.     

Capsules for Frozen Sectioning of Small Specimens

It was necessary to make sections of small unfixed specimens which had been frozen while still immersed in their normal culture medium. The principal difficulty stemmed from the poor sectioning quality of the frozen culture medium. A capsule is described which has a narrow well in which the tissue specimen fits snugly within a small amount of culture medium. After freezing, the whole capsule is sectioned and the resulting sections, being nearly devoid of culture medium, are of good quality.     

A technique for labelling the sample surface for quick-freeze,deep-etch,rotary replication electron microscopy: application to the study of geletin gel structure

A method using magnesium oxide crystals to label the surface of physical gels, such as gelatin gel before quick-freezing is described and discussed. The quick-freeze, deep-etch, rotary replication technique is most adapted to 3-D visualization of physical gel structure. However, it is known that the depth which ultrarapid freezing may reach is limited by the growth of ice crystals as the distance from the surface of the specimen (rapidly cooled by smashing against a cooled metal plate) increases. Consequently, intact preservation of structures occurs only in superficial zones of the specimen. The MgO surface labelling technique provides a simple means for surface recognition. It enables the estimation of a given replicated area depth, taking into account the angle of specimen scraping before etching and replicating. By comparison of views of the same replica at different depths, freezing artifacts may be recognized even when they cause only slight deformations in the structure. This is particularly necessary for interpretation of gel network geometry: interpretation can be made with certainty only if a reliable surface reference marker exists. For gelatin gels, the depth of best freezing can be estimated to be around 5 μm from the frozen sample surface.     

Relationship between soil solution aluminium and low molecular weight organic acids in a conservation cropping system

Soil solution and solid phase analyses were compared for stubble standing and stubble burnt systems on an acid, acidified and limed Alfisol in north-eastern Victoria. Exchangeable (1 M KCl) aluminium (Al), soil solution total and monomeric Al, pH (water) and soil solution pH were measured to identify any differences in soil acidification between the stubble burnt and the stubble standing treatments. All measures of Al increased with soil depth down to 10 cm in all stubble treatments and decreased in the 10–20 cm soil depth with the exception of lime treatments. Concentrations of low molecular weight organic acids in the soil solution were determined by high pressure liquid chromatography (HPLC). Aromatic and aliphatic acids were distributed throughout the soil depth (0–20 cm) for the stubble standing treatments but were confined to the 0–5 cm soil depth for the stubble burnt treatment. In this short term field trial (2 years for stubble management), the data suggest that the conventional practice of stubble burning was more acidifying than the soil conservation practice of stubble standing, over the 0–20 cm soil depth for the lime (6 t ha^-1) treatments.     

Effects of inorganic nitrogen application on the dynamics of the soil solution composition in the root zone of maize

The effect of inorganic nitrogen (N) fertilizer on the ionic composition of the soil solution under maize (Zea mays L.) was studied. A pot experiment was carried out with two treatments combined factorially, with or without N application (Ca(NO₃)₂; +N and –N treatments, respectively), and with or without plants. Three looped hollow fiber samplers were installed in each pot to sample soil solutions nondestructively from the root zone, seven times during the 50-day growth period. Plants were harvested on the 50th day, and their nutrient contents determined.Effects of N fertilizer on the soil solutions were observed by the first sampling, 2 days after sowing. The concentrations of Ca and NO₃ ^– and electrical conductivity (EC) increased significantly in the +N treatments as direct effects of fertilizer application. In addition, the concentrations of Mg, K, Na and H⁺ also increased and that of P decreased significantly as indirect effects caused by the re-establishment of chemical equilibria. This suggested the greater supply as well as the greater possibility of leaching loss not only of NO₃ ^– but also of Ca, Mg and K. In the treatments with plants, the concentrations of NO₃ ^–, Ca, Mg and K decreased with time and pH increased significantly compared with the unplanted soil. The depletion of N in the soil solution roughly agreed with the amount of N taken up by the plant. The depletions of K from the soil solution amounted to less than 10% of the amount of the K taken up, suggesting intensive replenishment of K from exchange sites in the soil. Depletions of Ca and Mg were several times higher than the amounts taken up, indicating that the depletions resulted from the adsorption of the divalent cations by the soil rather than uptake by plants. Because NO₃ ^– is hardly absorbed by exchange sites in soil and was the dominant anion in solution, it was concluded that NO₃ ^– had a major role in controlling cation concentrations in the soil solution and, consequently, on their availability for uptake by plants as well as their possible leaching loss. ei]H Marschner     

Influence of pastoral fallow on plant root growth and soil physical and chemical characteristics in a hill pasture

Pastoral fallowing over a growing season (October–May) has a profound effect on standing biomass and sward structure, and should have an impact on below ground plant growth and soil biological activities. Two field studies were conducted to compare the effects of pastoral fallow with rotational grazing on root growth and soil physical and chemical properties. Root growth and distribution was altered by pastoral fallowing and there was significantly (P < 0.01) less root biomass at 0–50 mm depth of soil in the fallowed sward than the grazed sward. Compared with the grazed treatment, pastoral fallow increased soil air permeability at 500 mm tension by 38%, saturated hydraulic conductivity by 26%, unsaturated hydraulic conductivity at 20 mm tension by 67% and soil moisture by 10–15%, and reduced soil bulk density by 11%. Fallowing had little effect on soil nutrients both at the end of fallowing, except for small reductions in K and Mineral N levels at 0–75 mm soil depth, and two to three years after fallowing.     

Mechanical response of periodontal ligament: Effects of specimen geometry, preconditioning cycles and time lapse

This study was conducted as part of research line addressing the mechanical response of periodontal ligament (PDL) to tensile–compressive sinusoidal loading. The aim of the present project was to determine the effect of three potential sources of variability: (1) specimen geometry, (2) tissue preconditioning and (3) tissue structural degradation over time. For the three conditions, selected mechanical parameters were evaluated and compared.(1) Standard flat specimens (obtained by sequentially slicing portions of bone, PDL and dentin using a precision band saw) and new cylindrical specimens (extracted with a diamond-coated trephine drill) were obtained from bovine mandibular first molars and subjected to a sinusoidal load profile. (2) Specimens were loaded with up to 2000 cycles. (3) Specimens were immersed in saline and tested after 0, 30 and 60 min.From the data generated, the following was concluded: (1) specimen geometry and preparation technique do not influence the mechanical response of the PDL; (2) the mechanical response stabilizes after approximately 1000 cycles; and (3) no major structural degradation occurs when PDL is immersed in saline for a time lapse up to 60 min.     

Yield of Two Consecutive Sputum Specimens for the Effective Diagnosis of Pulmonary Tuberculosis

Background

From long instances, it is debatable whether three sputum specimens are required for the diagnosis of pulmonary tuberculosis (TB) or TB can be diagnosed effectively using two consecutive sputum specimens. This study was set out to evaluate the significance of examining multiple sputum specimens in diagnosis of TB.

Methods

We retrospectively reviewed the acid-fast bacillus (AFB) smear and culture results of three consecutive days’ sputum specimens from 413 confirmed TB patients which were detected as part of a larger active case finding study in Dhaka Central Jail, the largest correctional facility in Bangladesh.

Results

AFB was detected from 81% (n = 334) patients, of which 89% (n = 297) were diagnosed from the first and additional 9% (n = 30) were from the second sputum specimen. M. tuberculosis growth was observed for 406 patients and 85% (n = 343) were obtained from the first sputum and additional 10% (n = 42) were from the second one. The third specimen didn’t show significant additional diagnostic value for the detection of AFB by microscopy or growth of the M. tuberculosis.

Conclusions

We concluded from our study results that examining two consecutive sputum specimens is sufficient enough for the effective diagnosis of TB. It can also decrease the laboratory workload and hence improve the quality of work in settings with high TB burden like Bangladesh.     

ELECTRIFICATION OF WATER AND OSMOTIC PRESSURE

1. Amphoteric electrolytes form salts with both acids and alkalies. It is shown for two amphoteric electrolytes, Al(OH)₃ and gelatin, that in the presence of an acid salt water diffuses through a collodion membrane into a solution of these substances as if its particles were negatively charged, while water diffuses into solutions of these electrolytes, when they exist as monovalent or bivalent metal salts, as if the particles of water were positively charged. The turning point for the sign of the electrification of water seems to be near or to coincide with the isoelectric point of these two ampholytes which is a hydrogen ion concentration of about 2 x 10^–5 N for gelatin and about 10^–7 for Al(OH)₃. 2. In conformity with the rules given in a preceding paper the apparently positively charged water diffuses with less rapidity through a collodion membrane into a solution of Ca and Ba gelatinate than into a solution of Li, Na, K, or NH₄ gelatinate of the same concentration of gelatin and of hydrogen ions. Apparently negatively charged water diffuses also with less rapidity through a collodion membrane into a solution of gelatin sulfate than into a solution of gelatin chloride or nitrate of the same concentration of gelatin and of hydrogen ions. 3. If we define osmotic pressure as that additional pressure upon the solution required to cause as many molecules of water to diffuse from solution to the pure water as diffuse simultaneously in the opposite direction through the membrane, it follows that the osmotic pressure cannot depend only on the concentration of the solute but must depend also on the electrostatic effects of the ions present and that the influence of ions on the osmotic pressure must be the same as that on the initial velocity of diffusion. This assumption was put to a test in experiments with gelatin salts for which a collodion membrane is strictly semipermeable and the tests confirmed the expectation.     

VISUALIZATION OF FREEZING DAMAGE

Freeze-cleaving can be used as a direct probe to examine the ultrastructural alterations of biological material due to freezing. We examined the thesis that at least two factors, which are oppositely dependent upon cooling velocity, determine the survival of cells subjected to freezing. According to this thesis, when cells are cooled at rates exceeding a critical velocity, a decrease in viability is caused by the presence of intracellular ice; but cells cooled at rates less than this critical velocity do not contain appreciable amounts of intracellular ice and are killed by prolonged exposure to a solution that is altered by the presence of ice. As a test of this hypothesis, we examined freeze-fractured replicas of the yeast Saccharomyces cerevisiae after suspensions had been cooled at rates ranging from 1.8 to 75,000°C/min. Some of the frozen samples were cleaved and replicated immediately in order to minimize artifacts due to sample handling. Other samples were deeply etched or were rewarmed to -20°C and recooled before replication. Yeast cells cooled at or above the rate necessary to preserve maximal viability (~7°C/min) contained intracellular ice, whereas cells cooled below this rate showed no evidence of intracellular ice.