Inbreeding avoidance in an isolated indigenous Zapotec community in the valley of Oaxaca, southern Mexico

We analyzed inbreeding using surname isonymy in an indigenous genetic isolate. The subjects were residents of a rural Zapotec-speaking community in the valley of Oaxaca, southern Mexico. The community can be classified as a genetic isolate with an average gene flow of < or = 3% per generation. Surnames were collected for individuals in each household in pedigree form using the culturally traditional patronym-matronym naming. Estimation of inbreeding from surname isonymy is facilitated by the traditional patronym-matronym name assignment among indigenous Mexican populations. A total of 2,149 individuals had valid surname patronym-matronym pairings, including 484 deceased ancestors. Surname isonymy analysis methods were used to estimate total inbreeding and to segregate it into random and nonrandom components. The surname isonymy coefficient computed from 119 isonymous surname pairings (119/2,149) was 0.0554. The estimated inbreeding coefficient from surname isonymy was 0.0138 (0.0554/4). The random and nonrandom components of inbreeding were F(r) = 0.0221 and F(n) = -0.0091, respectively. The results suggest that consanguinity is culturally avoided. Nonrandom inbreeding decreased total inbreeding by about 41%. Total estimated inbreeding by surname isonymy was 0.0138, which is similar to inbreeding estimated from a sample of pedigrees, 0.01. Socially prescribed inbreeding avoidance substantially lowered total F through negative nonrandom inbreeding. Even in the situation of genetic isolation and small effective population size (N(e)), estimated inbreeding is lower than may have otherwise occurred if inbreeding were only random. However, among the poorest individuals, socially prescribed jural rules for inbreeding avoidance failed to operate. Thus the preponderance of inbreeding appears to occur among the poor, economically disadvantaged in the community.     

Inbreeding as measured by isonymy, pedigrees, and population size in Törbel, Switzerland.

Törbel provides an interesting test case for the study of the relationship between inbreeding measured by pedigrees and inbreeding measured by isonymy. At the start of this investigation, we were aware that isonymy could introduce biases into the calculation of the inbreeding coefficient in either direction. However, it was expected that in Switzerland, inbreeding from isonymy would be an overestimate due to patrilocal residence and polyphyletic names. One way of dealing with this problem [13] was not to be concerned with the absolute value of inbreeding but only in the difference between estimates. Any bias introduced in the estimate itself disappears in such comparisons, so that a trend of inbreeding can be ascertained correctly. However, it was considered equally important to subject several populations to both a complete pedigree analysis and an isonymic analysis to determine the relationship between estimates of inbreeding. Despite the fact that several authors (Swedlund [18], for example) warned users of isonymy to exercise caution, the careless application of isonymy still persists. In the present study, estimates of inbreeding from isonymy were brought into line with other methods based on pedigree analysis and population size. However, it was possible to do this only in Törbel where pedigree depth was extensive and relatively complete. Similar corrections are possible only when the distribution of mono- and polyphyletic names is known and when migration data are reliable. If the trouble is taken to make these corrections, the same time and effort might as well be spent in pedigree analysis (when fairly complete ascertainment is possible) to achieve the same end result.     

Medico-genetic study of the population of the Kostroma region. III. Inbreeding coefficient and its dynamics in rural populations and small towns

Analysis of the inbreeding coefficient, its structure and dynamics in rural and urbanized populations of the Kostroma province was performed. The coefficient of inbreeding was estimated for the "old" and "new" villages via migration and isonymy, the values being 0.001185; 0.000786 and 0.001341; 0.000682, respectively. It follows from these data that there is a good agreement between the values of the inbreeding coefficient estimated by two different methods and that this coefficient is diminished doubly in "new" villages. The coefficient of inbreeding in small towns was estimated via isonymy. It is 0.000704 in ancient and 0,000229 in modern towns. The decrease in the inbreeding coefficient was more pronounced in towns, as compared to villages.     

Estimation of inbreeding by isonymy in Iberoamerican populations: an extension of the method of Crow and Mange

The method of isonymy for the estimation of inbreeding levels was extended to use the potentialities offered by the Iberoamerican surname system, in which a child inherits his surnames both from the father and the mother. Four possible types of isonymy were recognized between the family names of a husband-wife pair. It was found that, limited to simple consanguinity, the ratio between isonymy and the inbreeding coefficient of consanguineous individuals, starting from first cousins, is constant and equal to 16. Consanguinity levels were studied in four Venezuelan groups, Isla de Toas, Los Teques, Quibor, and Colonia Tovar, using genealogies, classical isonymy, and the extended method. It was found that, for Iberoamerican populations, the extended method is more precise than the classical method.     

Genetic Demographic Description of the Ust-Aldan Rural Population of Sakha Republic (Yakutia): Migrations and Marriage Structure

Migrations, dynamics of the gametic structure of rural populations, and marriage structure with respect to birthplaces and inbreeding estimated from isonymy have been studied in the Ust-Aldan ulus (administrative district) of Sakha Republic (Yakutia). The villages studied (Byadi, Dyupsya, and Cheriktey) are characterized by intense migration; however, the migration radius is small (most migrations occur within the district). The rural populations studied differ in the intensities and directions of gamete flows and their dynamics. There is no substantial gamete flow into the Ust-Aldan population from outside Sakha Republic. About 50% of marriages contracted in this population are homolocal (between residents of the same district); the endogamy is low (15%). In most cases of heterolocal marriages (contracted between residents of different districts), one of the spouses is a local resident. The inbreeding estimated from isonymy is F _IT = 0.002930 in Yakuts; it is mainly accounted for by the nonrandom component (F _IS = 0.002232 and F _ST = 0.000700).     

The names of Spain: a study of the isonymy structure of Spain

In order to estimate the isonymy structure of Spain, we studied surname distribution in 283 Spanish towns based on 3.625 million telephone users selected from 6.328 million users, downloaded from a commercial CD-ROM which contains all 13 million users in the country. Since in Spain the surname is made by the paternal and the maternal surname, it was possible to classify surnames according to parental origin. Two matrices of isonymy distances, one for paternal and one for maternal surnames, were constructed and tested for correlation with geographic distance. For the whole of Spain, Euclidean distance was significantly but weakly correlated with geographic distance both for paternal and maternal surnames, with r = 0.205 +/- 0.013 and r = 0.263 +/- 0.012, respectively. Two dendrograms of the 283 sampled towns were built from the two matrices of Euclidean distance. They are largely colinear. Four main clusters identified by the dendrograms are correlated with geography. Given the surname structure of Spain, we were able to calculate from isonymy and for each town 1). total or expressed inbreeding, 2). random or expected inbreeding, and 3). local inbreeding. Total inbreeding, F(IT), was highest in the North Atlantic regions and lowest along the Mediterranean Coast. The lowest levels were found in Andalusia, Catalunyia, Valencia, and Navarra. Random inbreeding, F(ST), had a similar geographical pattern. Local inbreeding, F(IS), was relatively uniform in the whole of Spain. In towns, random inbreeding dominates over local inbreeding. From the analysis, it emerges that the northwestern area of Spain is the most inbred.     

Isonymic analysis of population structure in Gredos, Spain

For the period 1875-1975 an isonymic analysis was made based on 41,696 marriages celebrated in three valleys (Tormes, Alberche and Tietar) from Gredos (Spain). Total inbreeding (Ft) was lower in the Tietar valley (0.0103- 0.0136), followed by the Tormes (0.0125-0.0255) and the Alberche (0.0153-0.0200). In the latter, random inbreeding (Fr) surpassed non random (Fn). Correlation coefficients were obtained to confirm an association of inbreeding from isonymy with valley and village endogamy rates, locality census, altitude, and alpha inbreeding. Fn correlated positively with average valley endogamy and village endogamy and with altitude, but inversely with census size. Contrarily, Fr related significantly to village endogamy. The non-random component from isonymy related positively to inbreeding from dispensations. Except for village endogamy, both variables show the same relationships to variables, such as altitude, which reflect limitations to mobility; or valley endogamy indicating the disposability of potential mates which in turn depends on the census size.     

Genogeographic analysis of a subdivided population. II. Geography of random inbreeding (from frequency of surnames in Adygs)

An important characteristic of the genetic structure of populations, random inbreeding (interpopulation variation), was evaluated on the basis of quasi-genetic markers (surnames). The following methodological issues are considered: estimation of random inbreeding using the coefficient of isonymy fr in a subdivided population; a comparison of inbreeding levels calculated on the basis of surname frequencies using fr and Wright's FST; a comparison of inbreeding estimates obtained on the basis of surnames and genetic markers; inbreeding variation in populations of the same hierarchical rank; and planning of genetic studies of a subdivided population. The population of Adygs (an indigenous ethnic group of Northern Caucasus) was examined as a model subdivided population. The population system of Adygs is hierarchical. Parameters of random inbreeding were examined at each level of the system "ethnic group==>tribe==>geographic group of auls==>aul." Frequencies of surnames were collected subtotally. Data on frequencies of 1340 surnames in 61 auls representing all Adyg tribes were analyzed. In total, 60,000 people were examined. The inbreeding estimates obtained on the basis of Wright's FST and the coefficient of isonymy fr virtually coincided: for Adygs in general, FST x 10(2) = 2.13 and fr x 10(2) = 2.09. At the same time, the inbreeding level exhibited marked differences among tribes: in Shapsugs, these differences were an order of magnitude higher than in Kabardins (fr x 10(2) = 2.53 and 0.25, respectively). The inbreeding estimates for auls differed by two orders of magnitudes: fr x 10(2) = 0.07 and fr x 10(2) = 7.88. An analysis of ten auls yielded fully coinciding inbreeding estimates based on quasi-genetic (fr x 10(2) = 0.60) and classical (FST x 10(2) = 0.69) gene markers. Computer maps of surname distributions in Adygs (1340 maps) were constructed for the first time ever. Based on these maps, the map of random inbreeding in the Adyg population was obtained.     

Inbreeding as measured by isonymy in two Venezuelan populations and its relationship to other variables

Isonymy is a useful approach to the study of population structure and thus can be utilized to detect deviations from random mating. In this study we give the results of an analysis of inbreeding levels and relate such variables as mean marital distance, surnames repeated in isonymous couples, and percentage of people using only maternal surnames to inbreeding and endogamy in two Venezuelan populations of black ancestry, Birongo and La Sabana. These populations differ in their sociocultural development and degree of isolation. We estimated inbreeding through isonymy and directly from genealogy. The most important findings are that the Ft values are higher than the a's, that the Fn component of Ft is higher than the Fr component, and that there is higher endogamy, inbreeding, and isolation in Birongo than in La Sabana. These results are in agreement with the sociocultural and historical background and development of each population. Nevertheless, both populations show similar temporal trends in almost all the variables analyzed. The use of isonymy as a complementary tool to study population structure is proposed, especially for Ibero-American populations.     

An estimation of inbreeding from isonymy in the historical (1734-1810) population of the Quebrada de Humahuaca (Jujuy, Argentina)

The method of isonymy to estimate inbreeding is applied to the historical population of the Quebrada de Humahuaca (Province de Jujuy, Republic of Argentina). Data from the baptismal records of the Parochial Church of Humahuaca from 1734 to 1810 were grouped into two periods, 1734-72 and 1773-1810. The analysis was carried out twice: (a) using the surnames exactly as they were registered; (b) combining homonymous surnames which were pronounced or spelt in a similar way. The random and non-random components of inbreeding have been investigated through different methods. There were no significant differences between the results of the two analyses, nor between the expected and observed isonymy. The value of F lies somewhere between those for offspring of first cousins once removed and second cousins once removed. There is a tendency for F and its components to increase through time. It is concluded that the high altitude aboriginal population of Humahuaca Parish must have behaved as a panmictic unit.     

Note on estimates of the inbreeding coefficient through study of pedigrees and isonymous marriages

Crow and Mange (1965) developed a method to estimate the inbreeding coefficient (F) through an ingenious surname analysis. Such formulations assume a regularity of transmission of surnames, monophyletism, and random occurrence of consanguineous marriages. Accordingly, the ratio of isonymous partners to F of the offspring is equal to 4. Nevertheless, genealogy analyses show that the consanguineous marriages do not necessarily occur regularly. Therefore the isonymy analysis gives a misestimation of the inbreeding coefficient, depending on the prevailing form of nonrandomness. We suggest a small correction to the formulation in situations when pedigree information is available. The weighted mean of the ratio of isonymous partners to F of the known consanguineous marriages is suggested as a way to improve the formulas. The technique was applied to a northeastern Brazilian sample, and the results agree well with those of bioassays and therefore provide an apparently more realistic estimate of the inbreeding coefficient by isonymy.     

Doubts about isonymy

The method of isonymy, developed by Crow and Mange for estimating inbreeding from surname frequencies, requires an assumption that has not been appreciated: It is necessary to assume that all males in some ancestral generation, the founding stock, had unique surnames. Because this assumption is seldom justified in real populations, the applicability of the isonymy method is extremely limited. Even worse, the estimates it provides refer to an unspecified founding stock, and this implies that these estimates are devoid of information.     

Patterned selection of mates in St. Ouen, Jersey, and the Scilly Isles examined by isonymy

Within-lineage repeated-pair isonymy is calculated as RPW = sigma [Sij(Sij - 1)]/sigma [Si(Si - 1)], in which Sij is the number of a combination of two surnames in marriages (for total RPW, in both orders, brides first and also grooms first) and Si is the corresponding number of individuals of each surname (for total RPW of both sexes). In St. Ouen the 3479 native Jersey marriages between 1634 and 1914 yield a mean total RPW of 0.03314, which can be compared with a random isonymy (Ir) of 0.02205 and a marital isonymy (Im) of 0.04942. In the most recent time periods (1830-1914) there was an increase in RPW, but the increase is small if all marriages are considered rather than only native Jersey ones. In the Scilly Isles 2827 marriages between 1725 and 1975 yield a mean total RPW of 0.05127, which compares with a mean Ir of 0.01960 and an Im of 0.05238. In each kind of isonymy there is a decline over 1850-1975 caused by increased migration to the Scilly Isles. In the Scilly Isles RPW consistently approximately equals Im, so the nonrandom component of inbreeding is fully accounted for by factors that affect marital choice in the whole lineage. In St. Ouen, however, RPW is intermediate in value between Ir and Im, so the nonrandom component of inbreeding is only partly a lineage phenomenon and is also affected by other (individual) factors in choice of spouses.     

Genetic demographic description of the Ust-Aldan rural population of Sakha Republic (Yakutia): migrations and marriage structure

Migrations, dynamics of the gametic structure of rural populations, and marriage structure with respect to birthplaces and inbreeding estimated from isonymy have been studied in the Ust-Aldan ulus (administrative district) of Sakha Republic (Yakutia). The villages studied (Byadi, Dyupsya, and Cheriktey) are characterized by intense migration; however, the migration radius is small (most migrations occur within the district). The rural populations studied differ in the intensities and directions of gamete flows and their dynamics. There is no substantial gamete flow into the Ust-Aldan population from outside Sakha Republic. About 50% of marriages contracted in this population are homolocal (between residents of the same district); the endogamy is low (15%). In most cases of heterolocal marriages (contracted between residents of different districts), one of the spouses is a local resident. The inbreeding estimated from isonymy is FTT = 0.002930 in Yakuts; it is mainly accounted for by the nonrandom component (FIS = 0.002232 and FST = 0.000700).     

A study of contemporary levels and temporal trends in inbreeding in the Tangier Island, Virginia, population using pedigree data and isonymy

In this study we describe inbreeding in a large pedigree from Tangier Island, Virginia, in which we compare two commonly used methods to estimate inbreeding in humans: pedigree and isonymy (identical surnames of spouses). Genealogical data on 3,512 individuals dating back to 1722 were used. Using the pedigree method, we determined an average inbreeding coefficient (F) of 0.00873 for the community as a whole, and 0.018 for inbred individuals. Analysis of temporal trends showed that inbreeding began around 1800 and peaked at 0.0109 in 1824-1849 and 1875-1899. Thereafter, inbreeding steadily declined to 0.00565 in 1975-1997. Analysis of pedigree structure complexity over time showed that close consanguinity contributes to inbreeding in the earlier cohorts, and remote consanguinity accounts for much of the inbreeding in the later cohorts. The number of common ancestors increases over time, as does the number of paths connecting inbred individuals to these common ancestors. Inbreeding estimates based on the isonymy approach yielded a 2.2-fold higher value of F (0.01945) compared to the pedigree method. Total isonymy estimates over 25-year cohorts overestimated inbreeding values from pedigree data between 1. 5-8-fold. We speculate that the overestimation is probably due to the inability of our data to satisfy the method's assumption of monophyletic origin of each surname. In conclusion, inbreeding in the Tangier Island population is consistent with the isolated nature of its population, and temporal trends reflect patterns in emigration and a breakdown in isolation over time.     

Factors related to inbreeding components from isonymy in an urban population: Aranjuez (Spain)

An isonymic analysis has been carried out using a sample of 1529 reconstituted families residing during 1870-1964 in Aranjuez, an urban area situated south of Madrid, Spain. The random, non-random and total-components inbreeding coefficients from isonymy were obtained and the various combinations of surnames compared in order to infer the patri- or matrilocal pattern of residence. Throughout the period studied the random component of inbreeding (F(r)) has not changed, in contrast to the non-random component (F(n)), thus suggesting the latter could be responsible for the reduction of total inbreeding. Using several methodological approaches (biplot analysis, alpha, nu and percentage of immigrants) the predominance of the immigration of grooms was interpreted in terms of Aranjuez as a matrilocal pattern of residence. From this study it can also be concluded that surnames provided by reconstituted families are good estimators of inbreeding and migration.     

Surnames in the Azores: analysis of the isonymy structure

Geographic isolation is a significant factor to consider when characterizing human populations. The knowledge of the genetic structure of isolated populations has been of great importance to disease-locus positioning and gene identification. To investigate the genetic structure of the Azorean population, we conducted a survey based on the frequencies of surnames listed in the 2001 telephone book. We calculated the following parameters: isonymy (I), the random component of inbreeding (F(ST)), genetic diversity according to Fisher (alpha), Karlin-McGregor's migration rate (v), and Nei's distance. For the 1,271 subscribers and 163 different surnames, Graciosa island presented the lowest value of abundance of surnames (alpha = 15.75), suggesting great genetic isolation compared to the other eight islands. Migration, calculated on the basis of the diversity of surnames within islands, ranged from 0.2747 (Corvo island) to 0.0026 (S?o Miguel island), indicating that people migrated preferentially toward the economically more developed islands. The value of the random component of inbreeding obtained for the whole population (F(ST) = 0.0039) indicates little genetic differentiation (Wright's F(ST) < 0.05). Moreover, isonymy similarity revealed using the UPGMA method shows three subclusters corresponding to the geographic distribution of the islands.     

Inbreeding and reproductive parameters among Mennonites in Kansas

Abstract

The relationship between inbreeding and certain reproductive parameters was studied by analyzing the reproductive history questionnaires collected from 194 women who attended a research clinic in the Mennonite community of Goessel, Kansas, and for whom pedigrees were constructed from data at the Mennonite Historical Library and at the Alexanderwohl Church. Five reproductive parameters, age of menarche, age of menopause, length of reproductive span, number of children, and fetal wastage, were compared in inbred and noninbred women. There is no consistent evidence that absence of inbreeding or degree of inbreeding (F = 0.00024—0.0332) significantly affects these reproductive parameters in this sample of Mennonite women. If inbreeding does have an effect on these reproductive variables, it is too small to be detected in this sample.     

Medico-genetic study of the population of Kostroma Province. VI. The parameters of isolation by distance in the populations of the Bui and Shar'ya Districts of Kostroma Province

A model of isolation by distance proposed by Malécot and developed by Morton is applied to the data on marriage distances collected in two regions of Kostroma Province. There is good agreement between the estimates of local inbreeding when using the isonymy method and the model of isolation by distance. Interpopulation kinship approaches 0 at the distance 700 km. The mean coefficient of kinship for parents in the families with autosomal-recessive pathology is 20 times higher than mean coefficient of kinship in the population.     

Isonymy and isolation by distance in Italy

The isonymy structure of Italy was studied using the surname distribution of 5,043,580 private telephone users selected from a 1996 commercial CD-ROM that contains all 24 million users in the country. The users were distributed in 123 towns selected on a geographic basis. The 123 towns were either on the main communication roads of the country or at the ends of such roads. The shortest distance between nearest neighbor towns was 5.3 km (Carrara and Massa), and the largest distance was 1,136 km (Aosta and Castrignano del Capo). The number of different surnames found in the whole analysis was 215,623. Lasker's distance, the negative value of the logarithm of random isonymy between localities, was linearly and significantly correlated with the logarithm of geographic distance, with r = 0.63 +/- 0.008. A dendrogram was built from the matrix of isonymy distances, using UPGMA. It separates the Italian towns into 5 main clusters: 1 in the southern portion of the country, a second cluster toward the center, and 3 in the northern area of Italy. Within each cluster small subclusters with specific geographic distributions could be related to regional borders. Comparisons with the results of a previous analysis of Switzerland and Germany's structures are given. From the present analysis isolation by distance emerges clearly, although it is less strong than in Switzerland and stronger than in Germany. The random component of inbreeding estimated from isonymy indicates that the southern area of Italy is on average more inbred than the northern area. In fact, the heterogeneity is greater in the northern area, particularly in the plain of the Po River, than anywhere else in Italy.