Genetic structure of the critically endangered plant Tricyrtis ishiiana (Convallariaceae) in relict populations of Japan

Tricyrtis ishiiana is a relic endemic plant taxon of the Convallariaceae that inhabits two nearby gorges in Kanagawa Prefecture, Japan. The distribution range and number of populations are thought to have been reduced to the present refugial populations during the Quaternary climatic oscillations. Because of its showy flowers, this plant has faced illegal removal from its natural habitats for horticultural use and has been designated a critically endangered species (class IA). In this study, we analyzed the genetic structure of the relict populations of T. ishiiana in order to contribute to the conservation strategies of the prefectural government. Our analyses of nine nuclear microsatellite loci detected high genetic diversity (H _E = 0.704 and H _O = 0.541) for the two populations. The two populations were slightly differentiated (R _ST = 0.032), accompanied by faint substructure across the populations (K = 3). In addition, each population exhibited spatial genetic structuring. The relatively low inbreeding coefficient for both populations together (F _IS = 0.233) and each population separately (F _IS = 0.217?C0.246) may be attributable to crossing among descendants within a population along with occasional gene flow between the populations. These results suggested that the extant populations have not experienced a severe bottleneck. The two extant populations were genetically differentiated at a very low level, accompanied by occasional pollen flow via pollinators and/or seed dispersal by gravity in the mountainous environment. Occasional gene exchange between the populations has allowed T. ishiiana to harbor high genetic diversity despite being a relic plant confined to two small refugial populations.     

Investigations on some hybrids from theArabis hirsuta complex

Natural and artificial hybrids between the tetraploidArabis hirsuta (L.)Scop. s. str. and two diploid speciesA. sagittata (Bertol.) DC. orA. planisiliqua (Pers.)Reichenb. are the main subject of this paper. The investigations concern pollination behaviour, sterility, occurrence and frequency of hybrids, their morphology and cytology. Some questions concerning relations of the taxa within the complex and the significance of hybrids in the variability of natural mixed populations are discussed.     

Mosquito larvicidal activity of polyacetylenes from species in the Asteraceae

Twenty-four polyacetylenes isolated from species in the Asteraceae were screened for their near-UV-mediated larvicidal properties to the mosquito, Aedes aegypti. Dosage resonse lines for three of the most active compounds were prepared. One of these, σ-terthienyl from Tagetes was more toxic than DDT when near-UV radiation was provided. A scaled up trial with this compound in a simulated field situation demonstrated its potential as a larvicide. The effects of the radiation dose on larval survival were studied and the action spectra for the phototoxic effects of three compounds on larvae were obtained with narrowband interference filters. Because of the close agreement between the action and absorption spectra, it appears most probable that the polyacetylene is the primary absorbing compound. The potential of polyacetylenes as larvicides and their role in plant herbivore relations are discussed.     

Geographic association and temporal variation of chemical and physical defense and leaf damage in Datura stramonium

The evolution of plant defense traits has traditionally been explained trough the “coevolutionary arms race” between plants and herbivores. According to this, specialist herbivores have evolved to cope effectively with the defensive traits of their host plants and may even use them as a cue for host location. We analyzed the geographic association between leaf trichomes, two tropane alkaloids (putative resistance traits), and leaf damage by herbivores in 28 populations of Datura stramonium in central Mexico. Since the specialist leaf beetles Epitrix parvula and Lema trilineata are the main herbivores of D. stramonium in central Mexico, we predicted a positive association between plant defense and leaf damage across populations. Also, if physical environmental conditions (temperature or precipitation) constrain the expression of plant defense, then the geographic variation in leaf damage should be explained partially by the interaction between defensive traits and environmental factors. Furthermore, we studied the temporal and spatial variation in leaf trichome density and leaf damage in five selected populations of D. stramonium sampled in two periods (1997 vs. 2007). We found a positive association between leaf trichomes density and atropine concentration with leaf damage across populations. The interaction between defensive traits and water availability in each locality had a significant effect on the geographic variation in leaf damage. Differences among populations in leaf trichome density are maintained over time. Our results indicate that local plant–herbivore interaction plays an important role in shaping the geographic and temporal variation in plant defense in D. stramonium.     

内蒙古锡林郭勒高原大针茅种群分株构件数量性状的地理变异研究

采用单因素方差分析、变异组分分析和分形几何学的原理和方法,对内蒙古锡林郭勒盟不同气候条件下的三个大针茅种群分株构件数量性状进行了研究,并结合它们所在生境特点对所得结果进行了分析。结果显示：（1）整个生长季内,不同种群大针茅营养枝高度的生长模式不同;营养枝高度和生殖枝高度在种群间差异显著,且多数变异存在于种群之间;（2）在不同生长期内,大针茅种群地上部干重与植株高度之间存在显著的分形关系;在无强度干扰的情况下,大针茅种群营养枝分形维数的大小与大针茅营养枝地上部干重的累积程度是一致的;但在长期严重干旱条件下,分形维数值表现为快速增加;（3）整个生长季内,同一生境条件下大针茅种群营养枝地上部干重与植株高度之间也存在显著的分形关系,且不同样地间分形维数值差异显著。不同生境条件下大针茅种群分株构件数量性状的差异是对所在生境长期适应、自然选择的结果。     

Molecular characterization of native Australian trypanosomes in quokka (Setonix brachyurus) populations from Western Australia

The quokka, Setonix brachyurus, is a vulnerable, small marsupial endemic to Western Australia. Blood samples were collected from quokkas from three different geographical locations; Two Peoples Bay, Bald Island and Rottnest Island. The overall prevalence of trypanosomes by nested PCR at the 18S ribosomal RNA gene was 57.3% (63/110) with prevalences of 91.4%, 85.3% and 4.9% respectively for Two Peoples Bay, Bald Island and Rottnest Island. Phylogenetic analysis conducted on 47 18S PCR positives identified two Trypanosoma copemani genotypes, with T. copemani genotype B, the most prevalent genotype infecting quokka populations from the three locations with an overall prevalence of 51.8% (24/47) compared to 34% for T. copemani genotype A (16/47). The overall prevalence of mixed T. copemani genotype A and B infections was 14.9% (7/47). Phylogenetic analysis of 26 quokka isolates at the glyceraldehyde-3-phosphate dehydrogenase (GAPDH) locus, largely supported the 18S analysis but identified a mixed infection in one quokka isolate (Q4112-4117 from Two Peoples Bay). T. copemani genotype B has previously only been isolated from quokkas and the Gilbert's potoroo whereas T. copemani genotype A has a wide host range and may be pathogenic. Further work is required to determine the clinical impact of T. copemani on marsupial populations.     

Reciprocal interactions between native and introduced populations of common milkweed,Asclepias syriaca,and the specialist aphid,Aphis nerii

Following its introduction into Europe (EU), the common milkweed (Asclepias syriaca) has been free of most specialist herbivores that are present in its native North American (NA) range, except for the oleander aphid Aphis nerii. We compared EU and NA populations of A. nerii on EU and NA milkweed populations to test the hypothesis that plant–insect interactions differ on the two continents. First, we tested if herbivore performance is higher on EU plants than on NA plants, because the former have escaped most of their herbivores and have perhaps been selected for lower defence levels following introduction. Second, we compared two A. nerii lines (one from each continent) to test whether genotypic differences in the herbivore may influence species interactions in plant–herbivore communities in the context of species introductions. The NA population of A. nerii developed faster, had higher fecundity and attained higher population growth rates than the EU population. There was no overall significant continental difference in aphid resistance between the plants. However, milkweed plants from EU supported higher population growth rates and faster development of the NA line of A. nerii than plants from NA. In contrast, EU aphids showed similar (low) performance across plant populations from both continents. In a second experiment, we examined how chewing herbivores indirectly mediate interactions between milkweeds and aphids, and induced A. syriaca plants from each continent by monarch caterpillars (Danaus plexippus) to compare the resulting changes in plant quality on EU aphid performance. As specialist chewing herbivores of A. syriaca are only present in NA, we expected that plants from the two continents may affect aphid growth in different ways when they are challenged by a specialist chewing herbivore. Caterpillar induction decreased aphid developmental times on NA plants, but not on EU plants, whereas fecundity and population growth rates were unaffected by induction on both plant populations. The results show that genetic variation in the plants as well as in the herbivores can determine the outcome of plant–herbivore interactions.     

Genetic relationships among three native North-American Mahonia species, invasive Mahonia populations from Europe, and commercial cultivars

Horticulture is one of the most important pathways for plant invasion. We used microsatellite markers to reveal the impact of plant breeding on Mahonia aquifolium, an invasive ornamental shrub. Since it was bred by hybridization with the related species M. repens and M. pinnata, we compared populations of the three native species, various commercial cultivars and invasive populations. Invasive populations and cultivars were genetically differentiated from the native groups, but differences did not result from genetic bottlenecks. In cultivars but not in invasive populations, we proved genes from M. pinnata. No significant amount of M. repens genes were found in cultivars and invasive populations, but this result has to be viewed with caution because of the close relationship between native M. aquifolium and M. repens. We conclude that the evolution of invasive Mahonia populations was a result of restriction of gene pool during introduction, secondary release, and artificial selection, in combination with an increase of genetic diversity by plant breeders and by extensive gene flow.     

A Revised Classification Scheme for Genetically Diverse Populations of Heterodera glycines

Heterodera glycines, the soybean cyst nematode, is a major yield-limiting pathogen in most soybean production areas worldwide. Field populations of H. glycines exhibit diversity in their ability to develop on resistant soybean cultivars. Since 1970, this diversity has been characterized by a bioassay used to assign a race classification to a population. The value of the race scheme is reflected in the number and quality of resistant soybean cultivars that have been developed and released by soybean breeders and nematologists working in concert. However, the race scheme also has been misapplied as a means of studying H. glycines genotypes, in part due to the use of the term "race." For fungal and bacterial pathogen species, "race" can theoretically be applied to individuals of a population, thus allowing inference of individual genotypes. Application of a race designation to an individual egg or second-stage juvenile (J2) of H. glycines is not possible because a single J2 cannot be tested on multiple hosts. For other nematode species, "race" is defined by host ranges involving different plant species, whereas the H. glycines race test involves a set of lines of the same plant species. Nonetheless, because H. glycines populations vary in genetic diversity, and this variation has implications for management strategies, a mechanism is needed for documenting and discussing population differences. The HG Type scheme described herein avoids the implication of genetic uniformity or predictability in contrast to the way the race scheme has been used.     

陕西省林麝mtDNA D-loop区序列结构和种群遗传多样性

林麝(Moschus berezovskii)曾广泛分布于中国,由于盗猎和栖息地缩小,秦岭地区野生种群数量迅速下降,圈养繁殖种群已成立了几十年,但大多数圈养种群的遗传背景不清,种群规模增长非常缓慢。为了给这一物种的保护和管理提供有用的信息,调查了陕西省林麝1个圈养种群3个野生种群线粒体DNA(mt DNA)D-Loop 632 bp片段的遗传多样性和种群结构。在69个个体中其碱基组成为A+T的平均含量63.2%高于G+C含量36.8%,共检测到变异位点171个(约占总位点数的27.05%)。核苷酸多样性(Pi)为0.04424,平均核苷酸差异数(K)为19.908。69个个体分属32个单倍型,单倍型间的平均遗传距离(P)为0.070。32个单倍型构建的NJ系统树聚为3个分支,4个林麝群体中的单倍型是随机分布的。4个群体的平均遗传距离为0.043(标准误SE为0.005),凤县养殖场群体与留坝和陇县群体的亲缘关系较远。单倍型间的平均遗传距离为0.043,可见其遗传分化尚未达到种群分化的水平。结果表明,陕西省林麝群体mt DNA D-loop区序列存在着较丰富的变异和遗传多样性,凤县野生群体和凤县养殖场群体的核苷酸多样性和单倍型多样较高,养殖场种群没有出现近亲繁殖及遗传多样性下降的情况。凤县野生群体和凤县养殖场群体两者遗传分化较小,存在着较高的基因流水平。     

Effect of mother plant age on germination and size of seeds and seedlings in the perennial sedge Carex secalina (Cyperaceae)

The performance of seeds and seedlings in relation to the age of the mother plant was studied in Carex secalina. Seeds of this sedge can differ substantially in size. We planted 100 C. secalina individuals from three populations in a common garden and followed them for four years. We found that mean seed mass varied with plant age, but the pattern of variation was population-specific, with only one population showing significant reduction in seed mass with age. Similarly, germination frequency changed with age differently in different populations. The relationship between the age of the mother plant and the height of emerged seedlings did not differ between populations. In spite of the fact that plant size and mean seed mass exhibited similar patterns of variation within populations, there was no correlation between these two variables at the level of individuals. This means that the size of C. secalina tufts does not determine how big the seeds will be. Moreover, there was no relationship between mean seed mass and the height of seedlings. Presumably, factors intrinsic to each plant determine the production of either small or large seeds in a population-specific way.     

Dual metabolomics: A novel approach to understanding plant–pathogen interactions

One of the most well-characterised plant pathogenic interactions involves Arabidopsis thaliana and the bacteria Pseudomonas syringae pathovar tomato (Pst). The standard Pst inoculation procedure involves infiltration of large populations of bacteria into plant leaves which means that metabolite changes cannot be readily assigned to the host or pathogen. A plant cell–pathogen co-culture based approach has been developed where the plant and pathogen cells are separated after 12 h of co-culture via differential filtering and centrifugation. Fourier transform infrared (FT-IR) spectroscopy was employed to assess the intracellular metabolomes (metabolic fingerprints) of both host and pathogen and their extruded (extracellular) metabolites (metabolic footprints) under conditions relevant to disease and resistance. We propose that this system will enable the metabolomic profiling of the separated host and pathogen (i.e. ‘dual metabolomics’) and will facilitate the modelling of reciprocal responses.     

Volatile profiling of Arnicão (Lychnophora salicifolia mart.), a wild medicinal species from Brazilian Cerrado

Abstract

The Cerrado is a diverse Brazilian savanna with more than 12,000 species. Arnicão (Lychnophora salicifolia Mart – Compositae) is an endemic species occurring in central and southeast Brazil, at higher altitudes, in sandstone and quartzite soils. Lychnophora species have been reported for anti-inflammatory, antioxidant and UV protectant effects. Local communities use it to prepare traditional remedies (i.e. ointments or creams). The aim of this work was (1) to characterize the qualitative composition of L. salicifolia volatile fraction; (2) to evaluate the influence of the environmental conditions on the volatile fraction composition, by investigating plants harvested both in areas under stress conditions and protected from human interference; (3) optimizing a non-separative method for routine in-field analyses. Separative (HS-SPME-GC-MS) and non-separative (HS-SPME-MS) approach combined with PCA are proposed to discriminate between plant populations of L. salicifolia from two distinct areas. Forty-eight individuals were randomly collected from four populations. A clear separation between populations from protected and non-protected areas was observed, with an important presence of caryophyllene derivatives in populations from non-protected areas, usually with compounds associated to plant defense. Both analytical approaches gave the same results, confirming HS-SPME a useful approach for rapid in-field analysis of samples of wild populations.     

Genetic diversity and historical migration patterns of an endemic evergreen oak,Quercus acuta,across Korea and Japan,inferred from nuclear microsatellites

Forests dominated by broad-leaved evergreen trees cover a narrow zone of the southern coast of Korea as well as warm-temperate and subtropical regions of Japan. However, little is known about their establishment history, especially in Korea. Endemic Quercus acuta grows in Korea and Japan. We evaluated its genetic diversity, population structure, and degree of lineage admixture in terms of its distribution history. Analyses utilized seven nuclear microsatellites that were genotyped from 330 individuals of 16 populations. Genetic diversity was highest for the Japanese Kyushu populations. The allelic diversity of populations was similar between Jeju Island and Kyushu, implying that they are putative refugia. Although the mean F _ST value was very low, patterns for isolation-by-distance were strong and significant. Results from Bayesian clustering and Monmonier’s algorithm indicated that populations are roughly partitioned from west (Korea and Kyushu) to east (Japanese Honshu). Therefore, the two divisions within this species are demographically independent and may have arisen due to past fragmentation. In considering the mixed genetic structure between Korea and Kyushu populations, and the higher levels of genetic diversity in mainland Korea relative to Honshu, we hypothesized that this species has been able to survive within Jeju Island and Kyushu. Consequently, mainland Korea populations might have been shaped by range expansion that kept them well mixed from a continuous and large genetic resource.     

不同群落中米氏冰草和羊草的年龄结构动态

米氏冰草和羊草都是根茎型禾草,是典型的无性系植物。采取单位面积挖掘取样法,对呼伦贝尔沙地植被次生演替过程中的米氏冰草和羊草种群分株年龄结构进行调查。结果表明,在单生和混合群落中,米氏冰草分株分别由3和4个年龄级组成,羊草均由2个年龄级组成;米氏冰草分株数量和生物量年龄结构变化基本一致,即随着生长年限的延长,呈减少低龄级和增加高龄级比例的趋势,使单生群落中始终为增长型,但接近于稳定型,混生群落中由增长型变为稳定型。羊草分株数量和生物量年龄结构在连续2a均为明显的增长型。羊草各龄级平均单株生产力均高于米氏冰草,平均是米氏冰草的5.2倍。米氏冰草和羊草种群分株年龄结构的变化,蕴含着米氏冰草种群的优势地位将被羊草种群取代的趋势。     

Inferring the invasion history of coral berry Ardisia crenata from China to the USA using molecular markers

Genetic comparisons between native and invasive populations of a species can provide insights into its invasion history information, which is useful for guiding management and control strategies. The coral berry Ardisia crenata was introduced to Florida last century as a cultivated ornament plant, and has since spread widely throughout the southern regions of the USA. Previously, the genetic variation among 20 natural populations of A. crenata across its distribution center in southern China was quantified using seven microsatellite markers. Here we expand on that work by additionally sampling individuals from four other native populations in Taiwan and Japan, and from five invasive populations in the USA. We also examined the results from one chloroplast intergenic spacer region (trnF-trnL) in all 29 populations. Our aim is to identify the invasion source and subsequent history of the species?? spread throughout the southern USA. We observed lower genetic diversity in the invasive populations based on both microsatellite and chloroplast markers. Our data show that the invasive populations can be clustered with native populations in southeastern China, inferring this region as the geographic origin of A. crenata cultivars invading the USA. We further classified invasive individuals into invasive I and invasive II clusters. Nantou in Taiwan and Xihu in mainland China are the most closely related populations to those, which identify the former as potential sources for host-specific control agents. Our results, combined with the known introduction records, suggest that A. crenata was first multiply introduced into Florida and then secondarily colonized Louisiana and Texas from Florida.     

Competition between two naturalized dandelions,Taraxacum officinale weber andTaraxacum laevigatum DC., in mixed cultures with different levels of soil moisture

Taraxacum officinala andTaraxacum laevigatum were grown in mixed stands at various plant densities and mixing ratios with various levels of soil moisture to formulate the effect of soil moisture on the competitive relationship between the species. In pure stands, the mean plant weight—plant density relation for each level of soil moisture could be described by the reciprocal equation of the crowding effect. On the other hand, the response of mean plant weight to soil moisture content followed the reciprocal equation for a repulsive growth factor at the respective levels of plant density. By introducing the density conversion factor, the results of mixed stands could be successfully formulated from similar reciprocal equations. The dependence of density conversion factor on soil moisture content was also formulated. From these relations, a comprehensive formula was developed to describe the effects of plant density and soil moisture content on the growth of two species in mixed stands. Changes in the biomass in mixed stands were, examined by means of calculations based on the experimental results.     

Plant Species Composition Alters the Sign and Strength of an Emergent Multi-Predator Effect by Modifying Predator Foraging Behaviour

The prediction of pest-control functioning by multi-predator communities is hindered by the non-additive nature of species functioning. Such non-additivity, commonly termed an emergent multi-predator effect, is known to be affected by elements of the ecological context, such as the structure and composition of vegetation, in addition to the traits of the predators themselves. Here we report mesocosm experiments designed to test the influence of plant density and species composition (wheat monoculture or wheat and faba bean polyculture) on the emergence of multi-predator effects between Adalia bipunctata and Chrysoperla carnea, in their suppression of populations of the aphid Metopolophium dirhodum. The mesocosm experiments were followed by a series of behavioural observations designed to identify how interactions among predators are modified by plant species composition and whether these effects are consistent with the observed influence of plant species composition on aphid population suppression. Although plant density was shown to have no influence on the multi-predator effect on aphid population growth, plant composition had a marked effect. In wheat monoculture, Adalia and Chrysoperla mixed treatments caused greater suppression of M. dirhodum populations than expected. However this positive emergent effect was reversed to a negative multi-predator effect in wheat and faba bean polyculture. The behavioural observations revealed that although dominant individuals did not respond to the presence of faba bean plants, the behaviour of sub-dominants was affected markedly, consistent with their foraging for extra-floral nectar produced by the faba bean. This interaction between plant composition and predator community composition on the foraging behaviour of sub-dominants is thought to underlie the observed effect of plant composition on the multi-predator effect. Thus, the emergence of multi-predator effects is shown to be strongly influenced by plant species composition, mediated, in this case, by the provision of extra-floral nectar by one of the plant species.     

Evolving ideas about genetics underlying insect virulence to plant resistance in rice-brown planthopper interactions

Many plant-parasite interactions that include major plant resistance genes have subsequently been shown to exhibit features of gene-for-gene interactions between plant Resistance genes and parasite Avirulence genes. The brown planthopper (BPH) Nilaparvata lugens is an important pest of rice (Oryza sativa). Historically, major Resistance genes have played an important role in agriculture. As is common in gene-for-gene interactions, evolution of BPH virulence compromises the effectiveness of singly-deployed resistance genes. It is therefore surprising that laboratory studies of BPH have supported the conclusion that virulence is conferred by changes in many genes rather than a change in a single gene, as is proposed by the gene-for-gene model. Here we review the behaviour, physiology and genetics of the BPH in the context of host plant resistance. A problem for genetic understanding has been the use of various insect populations that differ in frequencies of virulent genotypes. We show that the previously proposed polygenic inheritance of BPH virulence can be explained by the heterogeneity of parental populations. Genetic mapping of Avirulence genes indicates that virulence is a monogenic trait. These evolving concepts, which have brought the gene-for-gene model back into the picture, are accelerating our understanding of rice-BPH interactions at the molecular level.