Revision of Parancylodiscoides Caballero y C. & Bravo-Hollis, 1961 (Monogenoidea: Dactylogyridae), with a redescription of P. longiphallus (MacCallum, 1915) from the Atlantic spadefish Chaetodipterus faber (Broussonet) (Acanthuroidei: Ephippidae) in the Gulf of Mexico

The generic diagnosis of Parancylodiscoides Caballero y C. & Bravo-Hollis, 1961 (Monogenoidea: Dactylogyridae), with three valid species, was amended to include dactylogyrids having: a haptor with dorsal and ventral anchor/bar complexes, 14 hooks (seven pairs) and four reservoirs (two pairs); a dorsal bar with bifurcate ends; hooks with protruding, blunt and slightly depressed thumbs and undilated shanks; a dextroventral vaginal aperture leading to an elongate and oblique vaginal vestibule; a germarium dextral to the testis; a vas deferens looping the left intestinal caecum; a copulatory complex lacking an accessory piece; and two intestinal caeca lacking diverticula and united posterior to the gonads. Parancylodiscoides is most similar to Sundatrema Lim & Gibson, 2009, from which it differs only by the position of the vaginal aperture (sinistroventral in Sundatrema spp.) and by lacking a sucker-like genital pore. New information concerning the number and distribution of haptoral hooks, the relative positions of the gonads and the course of the vas deferens was provided for the type-species, P. chaetodipteri Caballero y C. & Bravo-Hollis, 1961. Parancylodiscoides longiphallus (MacCallum, 1915) Lim & Gibson, 2009 was redescribed based on specimens collected from the Atlantic spadefish Chaetodipterus faber from the Gulf of Mexico off Mississippi and Guaratuba Bay, Paraná, Brazil; its occurrence on the Atlantic spadefish from the Gulf of Mexico, Guaratuba Bay and off Puerto Rico represented new geographical records for this helminth. Parancylodiscoides caballerobravorum Cezar, Luque & Amato, 1999 was considered a junior subjective synonym of P. longiphallus. The monotypic Isohaliotrema Young, 1968 was placed in synonymy with Parancylodiscoides and its type-species, I. platacis Young, 1968, transferred to Parancylodiscoides as Parancylodiscoides platacis (Young, 1968) n. comb.     

Pseudorhabdosynochus summanoides n. sp. (Monogenea: Diplectanidae) from Epinephelus coioides in Dapeng Bay, South China Sea, with observations on several similar species of Pseudorhabdosynochus Yamaguti, 1958

One new species of diplectanid monogenean, Pseudorhabdosynochus summanoides n. sp., is reported and described from the marine fish Epinephelus coioides off Nan’ao Shenzhen, China. P. summanoides differs from its closest relative, P. summanae (Young, 1968), by the shape of its vaginal hard-parts, which have a tightly twisted distal region and an accessory patch on the proximal curve. During the course of this work, type-material of several species of Pseudorhabdosynochus was examined and aspects of the vagina and haptor are redescribed and/or figured. These species include P. americanus (Price, 1937), P. hargisi (Oliver & Paperna, 1984), P. amplidiscatus (Bravo-Hollis, 1954), P. epinepheli (Yamaguti, 1938), P. riouxi (Oliver 1986), P. melanesiensis (Laird, 1958), P. cupatus (Young, 1969), P. bocquetae (Oliver & Paperna, 1984), P. kritskyi Dyer et al., 1995, P. capurroi Vidal-Martinez, 1998, P. querni (Yamaguti, 1968) and P. summanae (Young, 1969). Several closely related species are considered in terms of their conspecificity: P. hargisi is proposed as a junior synonym of P. americanus; P. capurroi is suggested as a likely synonym of P. kritskyi; and it is suggested that P. cupatus and P. bocquetae may eventually be demonstrated to be consepcific with P. melanesiensis.     

Systematic status and first description of male of Dujardinia cenotae Pearse, 1936 [= Hysterothylacium cenotae (Pearse, 1936) Moravec et al., 1995] (Nematoda: Anisakidae)

A new collection of adult anisakid nematodes from the intestine of the catfish Rhamdia guatemalensis from two cenotes (= sinkholes) and a cave in the Yucatan Peninsula, southeastern Mexico, has shown that they are conspecific with those inadequately described as Dujardinia cenotae Pearse, 1936. The female is redescribed and the male is described for the first time. The morphology of this species shows that it belongs to the genus Hysterothylacium. This is the only Hysterothylacium species recorded from freshwater fishes in Mexico and it may well be endemic to cenotes and caves of the Yucatan Peninsula.     

A revision of the Haploporinae Nicoll, 1914 (Digenea: Haploporidae) from mullets (Mugilidae): <Emphasis Type="Italic">Saccocoelium</Emphasis> Looss, 1902

Saccocoelium Looss, 1902 is revised and a key to its recognised species is presented. S. obesum Looss, 1902 (type-species) and S. tensum Looss, 1902 are redescribed based on material from Liza spp. (Pisces: Mugilidae) in Spanish Mediterranean and, in the case of the former, Bulgarian Black Sea waters. Two new species, S. cephali n. sp. and S. currani n. sp., are described from Mugil cephalus L. in Spanish Mediterranean waters. S. gohari Ramadan, Saoud, Ashour & Mansour, 1989b is recognised and commented upon. Lecithobotrys helmymohamedi Ramadan, Saoud, Ashour & Mansour, 1989a, S. portsaidensis El-Shahawi, El-Gindy, Imam & Al-Bassel, 1992, S. saoudi El-Shahawi, El-Gindy, Imam & Al-Bassel, 1992, Neosaccocoelium aegyptiacus El-Shahawi, El-Gindy, Imam & Al-Bassel, 1992 are considered to be synonyms of S. tensum and Neosaccocoelium El-Shahawi, El-Gindy, Imam & Al-Bassel, 1992 a synonym of Saccocoelium. S. obesum, S. tensum and the two new species are compared morphometrically and distinguished by univariate and multivariate analyses. Lecithobotrys mugilis Rekharani & Madhavi, 1985 is transferred to Unisaccus Martin, 1973 as U. mugilis (Rekharani & Madhavi, 1985) n. comb., and Lecithobotrys sprenti Martin, 1973 [=  Saccocoelium sprenti (Martin, 1973) Overstreet & Curran, 2005] is transferred to Unisaccus as U. sprenti (Martin, 1973) n. comb. S. megasacculum Liu, Wang, Peng, Yu & Yang, 2004 is transferred to Elliptobursa Wu, Lu & Zhu, 1996 as E. megasacculum (Liu, Wang, Peng, Yu & Yang, 2004) n. comb. S. tripathi Dutta, 1995 (syn. Saccocoelium tripathi Datta & Manna, 1998) is considered to be a species inquirenda.

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The erection of Pelecanema n. g. (Nematoda: Spirurida: Acuariidae), with redescriptions of P. sirry (Khalil, 1931) n. comb. and P. pelecani (Johnston & Mawson, 1942) n. comb.

Pelecanema n. g. is erected for P. sirry (Khalil, 1931) n. comb., syn. Synhimantus sirry Khalil, 1931 (type-species) and P. pelecani (Johnston & Mawson, 1942) n. comb., syn. Dispharynx pelecani Johnston & Mawson, 1942. In the structure of its cordons, consisting of two rows of delicate cuticular plates, the new genus is similar to Synhimantus Railliet, Henry & Sisoff, 1912, Dispharynx Railliet, Henry & Sisoff, 1912, Chordatortilis Machado de Mendon?a & Olivera de Rodrigues, 1965 and Parachordatortilis Mutafchiev, Santoro & Georgiev, 2010. Pelecanema sirry, a parasite of Pelecanus onocrotalus L. and P. crispus Bruch (Pelecaniformes, Pelecanidae) in Africa (Egypt and Senegal) and Europe (Ukraine and Bulgaria), is redescribed using light and scanning electron microscopy on the basis of specimens from P. crispus from Bulgaria. Pelecanema pelecani, a parasite of Pelecanus conspicillatus Temminck in Australia, is also redescribed using light microscopy on the basis of specimens from its type-host and type-locality. In contrast to a previous opinion recognising Pelecanema sirry and P. pelecani as synonyms, the two species are considered distinct and P. pelecani is validated.     

A revision of the Haploporinae Nicoll, 1914 (Digenea: Haploporidae) from mullets (Mugilidae): two new haploporine genera and a key to the genera of the subfamily

Two new haploporine genera are established for parasites of mullets. Ragaia n. g. is erected for R. lizae n. sp. from Liza ramado in the Ebro Delta on the Mediterranean Coast of Spain. This new genus is distinguished by the unique combination of the following characters: a strongly muscular ventral sucker which is twice as large as the oral sucker; a large, muscular hermaphroditic sac similar in length to the ventral sucker; a saccular, thick-walled internal seminal vesicle which is larger than the external seminal vesicle; and the ovary and vitellarium located rather close to the posterior extremity. Pseudodicrogaster n. g. is erected to accommodate Dicrogaster japonica Machida, 1996, as P. japonica (Machida, 1996) n. comb., a parasite of Mugil cephalus L. off Fukaura, Japan. This genus is recognised on the basis of: the tubular condition of both the internal and external seminal vesicles, the latter being much shorter than the former; the sucker ratio; the massive pyriform hermaphroditic sac; the location of the testis; and the presence of two eye-spots in developed miracidia. A key to the nine recognised genera of the Haploporinae is presented.

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Six new and one previously described species of Pseudorhabdosynochus (Monogenoidea, Diplectanidae) infecting the gills of groupers (Perciformes, Serranidae) from the Pacific coasts of Mexico and Panama

Six new and 1 previously described species of Pseudorhabdosynochus (Diplectanidae) are described and/or reported from the gill lamellae of 5 serranid (Perciformes) fish species from the Pacific waters in Guerrero State of Mexico and Panama City, Panama. These species are Pseudorhabdosynochus guerreroensis n. sp. from the Pacific mutton hamlet Alphestes inmaculatus Breder (type host), rivulated mutton hamlet Alphestes multiguttatus (Günther), and spotted grouper Epinephelus analogus Gill from Mexico; Pseudorhabdosynochus urceolus n. sp. from the Pacific graysby Cephalopholis panamensis (Steindachner) from Taboga Island in Panama; Pseudorhabdosynochus spirani n. sp. from the starry grouper Epinephelus labriformis (Jenyns) from Mexico and the Perlas Archipelago and Taboga Island in Panama; Pseudorhabdosynochus fulgidus n. sp. from E. labriformis from Mexico and the Perlas Archipelago and Taboga Island (type locality) in Panama; Pseudorhabdosynochus tabogaensis n. sp. from E. labriformis from Mexico and the Perlas Archipelago and Taboga Island (type locality) in Panama; Pseudorhabdosynochus anulus n. sp. from E. labriformis from Mexico and Taboga Island (type locality) in Panama; and Pseudorhabdosynochus amplidiscatum (Bravo-Hollis, 1954) Kritsky and Beverley-Burton, 1986 from E. analogus and E. labriformis from Mexico and the Perlas Archipelago and Taboga Island in Panama. All new species are mainly distinguished from other species of the genus by the shape and size of the sclerotized vagina and haptoral structures. The present specimens of Alphestes, Cephalopholis, and Epinephelus spp. represent new host records and Panama represents a new geographic record for species of Pseudorhabdosynochus. The apparent common feature supporting a close similarity of these diplectanids is a single, secondary ejaculatory bulb with thickened wall.     

The enteric toxins of Clostridium perfringens

The Gram-positive pathogen Clostridium perfringens is a major cause of human and veterinary enteric disease largely because this bacterium can produce several toxins when present inside the gastrointestinal tract. The enteric toxins of C. perfringens share two common features: (1) they are all single polypeptides of modest (~25–35 kDa) size, although lacking in sequence homology, and (2) they generally act by forming pores or channels in plasma membranes of host cells. These enteric toxins include C. perfringens enterotoxin (CPE), which is responsible for the symptoms of a common human food poisoning and acts by forming pores after interacting with intestinal tight junction proteins. Two other C. perfringens enteric toxins, -toxin (a bioterrorism select agent) and -toxin, cause veterinary enterotoxemias when absorbed from the intestines; - and -toxins then apparently act by forming oligomeric pores in intestinal or extra-intestinal target tissues. The action of a newly discovered C. perfringens enteric toxin, 2 toxin, has not yet been defined but precedent suggests it might also be a pore-former. Experience with other clostridial toxins certainly warrants continued research on these C. perfringens enteric toxins to develop their potential as therapeutic agents and tools for cellular biology.

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On the use of hybrid reinforcement learning for autonomic resource allocation

Reinforcement Learning (RL) provides a promising new approach to systems performance management that differs radically from standard queuing-theoretic approaches making use of explicit system performance models. In principle, RL can automatically learn high-quality management policies without an explicit performance model or traffic model, and with little or no built-in system specific knowledge. In our original work (Das, R., Tesauro, G., Walsh, W.E.: IBM Research, Tech. Rep. RC23802 (2005), Tesauro, G.: In: Proc. of AAAI-05, pp. 886–891 (2005), Tesauro, G., Das, R., Walsh, W.E., Kephart, J.O.: In: Proc. of ICAC-05, pp. 342–343 (2005)) we showed the feasibility of using online RL to learn resource valuation estimates (in lookup table form) which can be used to make high-quality server allocation decisions in a multi-application prototype Data Center scenario. The present work shows how to combine the strengths of both RL and queuing models in a hybrid approach, in which RL trains offline on data collected while a queuing model policy controls the system. By training offline we avoid suffering potentially poor performance in live online training. We also now use RL to train nonlinear function approximators (e.g. multi-layer perceptrons) instead of lookup tables; this enables scaling to substantially larger state spaces. Our results now show that, in both open-loop and closed-loop traffic, hybrid RL training can achieve significant performance improvements over a variety of initial model-based policies. We also find that, as expected, RL can deal effectively with both transients and switching delays, which lie outside the scope of traditional steady-state queuing theory.

Location of the O-methyl groups in the O polysaccharide of Pseudomonas syringae pv. phaseolicola

The O-methylation pattern of the O polysaccharide (OPS) of the lipopolysaccharide of Pseudomonas syringae pv. phaseolicola GSPB 1552 was revealed by methylation (CD₃I) analysis, Smith degradation, and NMR spectroscopy. Together with the major O repeats consisting of -rhamnopyranose ( -Rhap) and -fucofuranose ( -Fucf), there are minor repeats (30%) containing 3-O-methyl- -rhamnose ( -acofriose), which is 2-substituted in the interior repeats and occupies the terminal non-reducing end of the OPS. It was suggested that the methylated O repeats are linked to each other nearby the non-reducing end of the OPS and that the ‘biological’ O repeat of the OPS has the following structure:

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Thalamocortical transformations of periodic stimuli: the effect of stimulus velocity and synaptic short-term depression in the vibrissa–barrel system

Recent works on the response of barrel neurons to periodic deflections of the rat vibrissae have shown that the stimulus velocity is encoded in the corti cal spike rate (Pinto et al., Journal of Neurophysiology, 83(3), 1158–1166, 2000; Arabzadeh et al., Journal of Neuroscience, 23(27), 9146–9154, 2003). Other studies have reported that repetitive pulse stimulation produces band-pass filtering of the barrel response rate centered around 7–10 Hz (Garabedian et al., Journal of Neurophysiology, 90, 1379–1391, 2003) whereas sinusoidal stimulation gives an increasing rate up to 350 Hz (Arabzadeh et al., Journal of Neuroscience, 23(27), 9146–9154, 2003). To explore the mechanisms underlying these results we propose a simple computational model consisting in an ensemble of cells in the ventro-posterior medial thalamic nucleus (VPm) encoding the stimulus velocity in the temporal profile of their response, connected to a single barrel cell through synapses showing short-term depression. With sinusoidal stimulation, encoding the velocity in VPm facilitates the response as the stimulus frequency increases and it causes the velocity to be encoded in the cortical rate in the frequency range 20–100 Hz. Synaptic depression does not suppress the response with sinusoidal stimulation but it produces a band-pass behavior using repetitive pulses. We also found that the passive properties of the cell membrane eventually suppress the response to sinusoidal stimulation at high frequencies, something not observed experimentally. We argue that network effects not included here must be important in sustaining the response at those frequencies.

Experimenting with Transmutation: Darwin, the Beagle, and Evolution

Detailed analysis of Darwin’s scientific notes and other writings from the Beagle voyage reveals a focus on endemism and replacement of allied taxa in time and in space that began early in the journey. Though it is impossible to determine exactly when Darwin became a transmutationist, the evidence suggests that he was conversant with the transmutational ideas of Lamarck and others and testing (“experimenting” with) them—before he received a copy of Lyell’s Principles of Geology, vol. 2, in November 1832, in which Lyell describes and disputes Lamarck’s theory. To the two rhea species of Patagonia and the four mockingbird species of the Galapagos, we can now add the living Patagonian cavy (rodent) species, and its extinct putatively related species that Darwin collected at Monte Hermoso (Bahia Blanca) in the Fall of 1832, as a replacement pattern absolutely critical to the development of Darwin’s transmutational thinking. Darwin developed his first transmutational theory by adopting “Brocchi’s analogy” (Rudwick 2008)—i.e. that births and deaths of species are analogous to the births and deaths of individuals. Births and deaths of species, as of individuals, are thus explicable in terms of natural causes. Darwin explored these themes and the replacement of the extinct cavy by the modern species explicitly in his February 1835 essay (Darwin 1835a).

Sparrowhawk Accipiter nisus presence and winter bird abundance

The decline and subsequent re-colonisation of the Sparrowhawk Accipiter nisus in the UK has allowed an examination of its potential impacts on passerine abundance through analysis of long-term garden bird monitoring data. Weekly counts in gardens in winter have been collected annually since the early 1970s, a period when Sparrowhawks were initially rare but recolonised to a point in the 1990s when they were recorded in the majority of gardens. Change in bird count from year-to-year for 10 common prey species from up to 483 survey sites were analysed in relation to Sparrowhawk re-colonisation, the number of feeding units per site (e.g. bird tables, hanging bird feeders) and, for a subset of the data, minimum temperature. Year-to-year change increased with Sparrowhawk re-colonisation in Great Tit Parus major, Blue Tit Cyanistes caeruleus and Collared Dove Stretopelia decaocto, but decreased in Starling Sturnus vulgaris, Chaffinch Fringilla coelebs and Greenfinch Carduelis chloris. Positive associations may suggest a behavioural response to predators, or an attraction of predators to increased prey caused by confounding effects of improvement in site quality. The significant negative effects detected suggest that there is a temporal matching between increased predation pressure and decreases in bird abundance for certain species. However, there was no strong evidence that Sparrowhawk re-colonisation was linked to long-term declines in population size.

Redescriptions of two species of microcotylid monogeneans from three arripid hosts in southern Australian waters

Microcotyle arripis Sandars, 1945 is redescribed from Arripis georgianus from four localities: Spencer Gulf, Gulf St. Vincent, off Kangaroo Island and Coffin Bay, South Australia, Australia. Kahawaia truttae (Dillon & Hargis, 1965) Lebedev, 1969 is reported from A. trutta off Bermagui, New South Wales and is redescribed from a new host, A. truttaceus, from four localities in South Australian waters: Spencer Gulf, Gulf St. Vincent, off Kangaroo Island and Coffin Bay. Phylogenetic analysis of the partial 28S ribosomal RNA gene (28S rRNA) nucleotide sequences for both microcotylid species and comparison with other available sequence data for microcotylid species across four genera contributes to our understanding of relationships in this monogenean family.     

Evidence of gonochorism in a grouper, <Emphasis Type="Italic">Mycteroperca rosacea</Emphasis>, from the Gulf of California,Mexico

The sexual pattern and sexual development of the leopard grouper, Mycteroperca rosacea, were investigated from 483 specimens collected from the Gulf of California, Mexico. Histological and population data indicated a gonochoric sexual pattern. Some juveniles passed through an immature bisexual phase of gonadal development, but no evidence of post-maturational sex change was found. The immature bisexual phase is believed to be associated only with male development. The size distribution and size at sexual maturity were similar for both males and females. In accordance with predictions of the size-advantage model, the gonochoric sexual pattern of M. rosacea is likely influenced by its group-spawning mating system.