Single-nucleotide-polymorphism genotyping of Coxiella burnetii during a Q fever outbreak in The Netherlands

Coxiella burnetii is the etiological agent of Q fever. Currently, the Netherlands is facing the largest Q fever epidemic ever, with almost 4,000 notified human cases. Although the presence of a hypervirulent strain is hypothesized, epidemiological evidence, such as the animal reservoir(s) and genotype of the C. burnetii strain(s) involved, is still lacking. We developed a single-nucleotide-polymorphism (SNP) genotyping assay directly applicable to clinical samples. Ten discriminatory SNPs were carefully selected and detected by real-time PCR. SNP genotyping appeared to be highly suitable for discrimination of C. burnetii strains and easy to perform with clinical samples. With this new method, we show that the Dutch outbreak is caused by at least 5 different C. burnetii genotypes. SNP typing of 14 human samples from the outbreak revealed the presence of 3 dissimilar genotypes. Two genotypes were also present in livestock at 9 farms in the outbreak area. SNP analyses of bulk milk from 5 other farms, commercial cow milk, and cow colostrum revealed 2 additional genotypes that were not detected in humans. SNP genotyping data from clinical samples clearly demonstrate that at least 5 different C. burnetii genotypes are involved in the Dutch outbreak.     

Risk factors of Coxiella burnetii (Q fever) seropositivity in veterinary medicine students

Background

Q fever is an occupational risk for veterinarians, however little is known about the risk for veterinary medicine students. This study aimed to assess the seroprevalence of Coxiella burnetii among veterinary medicine students and to identify associated risk factors.

Methods

A cross-sectional study with questionnaire and blood sample collection was performed among all veterinary medicine students studying in the Netherlands in 2006. Serum samples (n = 674), representative of all study years and study directions, were analyzed for C. burnetii IgG and IgM phase I and II antibodies with an immunofluorescence assay (IFA). Seropositivity was defined as IgG phase I and/or II titer of 1∶32 and above.

Results

Of the veterinary medicine students 126 (18.7%) had IgG antibodies against C. burnetii. Seropositivity associated risk factors identified were the study direction ‘farm animals’ (Odds Ratio (OR) 3.27 [95% CI 2.14–5.02]), advanced year of study (OR year 6: 2.31 [1.22–4.39] OR year 3–5 1.83 [1.07–3.10]) having had a zoonosis during the study (OR 1.74 [1.07–2.82]) and ever lived on a ruminant farm (OR 2.73 [1.59–4.67]). Stratified analysis revealed study direction ‘farm animals’ to be a study-related risk factor apart from ever living on a farm. In addition we identified a clear dose-response relation for the number of years lived on a farm with C. burnetii seropositivity.

Conclusions

C. burnetii seroprevalence is considerable among veterinary medicine students and study related risk factors were identified. This indicates Q fever as an occupational risk for veterinary medicine students.     

Serotyping Coxiella burnetii isolates from acute and chronic Q fever patients by using monoclonal antibodies

Abstract Four mouse monoclonal antibodies reacting with Coxiella burnetii lipopolysaccharide antigens were produced and used in serotyping 17 C. burnetii isolates from acute Q fever and Q fever endocarditis patients in France. Two monoclonal antibodies (1B2 and 3B6) were considered specific for the Priscilla strain, a representative of Q fever endocarditis isolates, and did not react with the Nine Mile strain, which is representative of acute Q fever isolates. Monoclonal antibodies Nos. 1B2 and 3B6 reacted with 75% (3/4) acute Q fever isolates and 85% (11/13) of endocarditis isolates from France. It is reasonable to conclude that Priscilla-like strains cause both acute Q fever and Q fever endocarditis. The hypothesis that Priscilla-like strains only are associated with Q fever endocarditis should be reconsidered.     

Vector competence of the African argasid tick Ornithodoros moubata for the Q fever agent Coxiella burnetii

Q fever is a widespread zoonotic disease caused by the intracellular bacterium Coxiella burnetii. While transmission is primarily but not exclusively airborne, ticks are usually thought to act as vectors on the basis of early microscopy studies. However, recent observations revealed that endosymbionts of ticks have been commonly misidentified as C. burnetii, calling the importance of tick-borne transmission into question. In this study, we re-evaluated the vector competence of the African soft tick Ornithodoros moubata for an avirulent strain of C. burnetii. To this end, we used an artificial feeding system to initiate infection of ticks, specific molecular tools to monitor further infections, and culture assays in axenic and cell media to check for the viability of C. burnetii excreted by ticks. We observed typical traits associated with vector competence: The exposure to an infected blood meal resulted in viable and persistent infections in ticks, trans-stadial transmissions of infection from nymphs to adults and the ability of adult ticks to transmit infectious C. burnetii. However, in contrast to early studies, we found that infection differed substantially between tick organs. In addition, while adult female ticks were infected, we did not observe C. burnetii in eggs, suggesting that transovarial transmission is not effective. Finally, we detected only a sporadic presence of C. burnetii DNA in tick faeces, but no living bacterium was further isolated in culture assays, suggesting that excretion in faeces is not a common mode of transmission in O. moubata.     

Animal Models of Q Fever (Coxiella burnetii)

Q fever, caused by the pathogen Coxiella burnetii, is an acute disease that can progress to become a serious chronic illness. The organism leads an obligate, intracellular lifecycle, during which it multiplies in the phagolytic compartments of the phagocytic cells of the immune system of its hosts. This characteristic makes study of the organism particularly difficult and is perhaps one of the reasons why, more than 70 y after its discovery, much remains unknown about the organism and its pathogenesis. A variety of animal species have been used to study both the acute and chronic forms of the disease. Although none of the models perfectly mimics the disease process in humans, each opens a window onto an important aspect of the pathology of the disease. We have learned that immunosuppression, overexpression of IL10, or physical damage to the heart muscle in mice and guinea pigs can induce disease that is similar to the chronic disease seen in humans, suggesting that this aspect of disease may eventually be fully understood. Models using species from mice to nonhuman primates have been used to evaluate and characterize vaccines to protect against the disease and may ultimately yield safer, less expensive vaccines.Coxiella burnetii is the causative agent of human Q fever. Infection can take several forms and has been described as clinically polymorphic.⁶ In humans, presentation ranges from asymptomatic, through acute disease, to chronic illness. In the majority of cases, acute disease presents as a self-limiting febrile illness, with half of cases also having severe headaches.⁸⁸ In severe cases of acute disease, atypical pneumonia is often found.⁸⁸ A small proportion (2% to 4%) of subjects with symptomatic acute Q fever are admitted to hospital.^70,88 Chronic disease may develop in approximately 5% of those infected;¹⁶ the vast majority of these cases will present as a bacterial culture-negative endocarditis^16,22 often in those with predisposing heart-damage¹⁹ or immunosuppression.¹⁶ Without effective treatment, Q fever endocarditis is generally fatal, but early diagnosis coupled with novel treatment strategies has brought the death rate down to less than 5%.⁶⁹ The 2009 outbreak in the Netherlands involved 2357 human cases, of which more than 400 required hospitalization.⁹⁰ The animal cost in the Netherlands was far higher, with more than 50,000 pregnant goats culled in an attempt to control the epidemic.⁸²Two other clinical manifestations of Q fever are worthy of mention owing to their less-than-satisfactory outcomes with current treatment strategies. These are Q fever during pregnancy and Q fever fatigue syndrome. C. burnetii infection during pregnancy results in premature delivery in almost half of those affected and spontaneous abortion in more than a quarter.¹⁴ There have been few studies in this area, but there are indications that among those infected during the first trimester and treated suboptimally, the abortion rate is 100%.⁶⁸ This effect is compounded by the fact that the frontline bactericidal drugs for treatment (doxycycline and hydroxychloroquine) are contraindicated for use during pregnancy.⁶⁸ A bacteriostatic regimen (cotrimoxazole) has therefore been proposed for use⁶⁸ until delivery. Without satisfactory treatment during and after pregnancy, there is also a high probability for infection to lead to chronic Q fever: an incidence of 70% was reported in a group of pregnant women in France.⁶⁸Post-Q fever fatigue syndrome was first reported in 1996,⁵² but an association between Q fever and chronic fatigue had been observed as early as 1982.⁵² Between 10% and 15% of those who have had acute Q fever develop a chronic fatigue syndrome that can last between 5 and 10 y—and even longer in some cases.⁵³ Some of these patients have been found to have long-term persistence of C. burnetii cell components and LPS associated with traces of genomic DNA,⁵³ suggesting that Q fever fatigue syndrome may be immunologically mediated rather than caused by the organism directly.Q fever is a zoonosis that has been described worldwide,⁵⁶ and human outbreaks are often associated with contact with the birth products of farm animals.⁵⁶ However, outbreaks associated with the birth products of domestic cats have also been reported.⁵⁴ Human infection primarily occurs via the inhalation of infectious aerosols.⁵⁶ Over the past 10 y, outbreaks have been reported in the Netherlands,⁷¹ Slovenia,²⁶ the United Kingdom,^91,97,99 Israel,² Iraq,¹⁸ the United States,¹¹ Germany,²⁴ Bulgaria,⁶³ Croatia,⁵⁸ Spain,²³ Italy,⁸³ and France.⁸⁸A very small number of C. burnetii organisms can cause infection by inhalation. Infection has been predicted to be possible after exposure to only a single organism.³³ This low dosage, coupled with the organism''s ability to cause debilitating disease and high levels of resistance to various means of inactivation^67,77,78 have resulted in it being listed as a category B biologic warfare and bioterrorism agent by the Centers for Disease Control.⁴⁹Prevention of Q fever in man can be achieved by vaccination; the only vaccine available for general use is Q-Vax, which was licensed in Australia in 1989.⁵¹ This vaccine consists of formalin-inactivated C. burnetii whole cells, produced in chick embryos. Its use has been associated with severe local reactions in those with preexisting immunity. As a precaution, prevaccination screening (history, skin test, and serology) must therefore be performed prior to administration.³⁵ Despite this safeguard, severe local reactions to vaccination are reported.⁴⁴ The vaccine is also hazardous to produce, with the organism requiring culture in chick-embryos at biosafety level 3 prior to inactivation.⁵¹ There is, therefore, a need for a vaccine that is safer to produce and safer to use and that does not require prevaccination screening.The organism displays antigenic phase variation often paralleled with the rough-smooth variation seen in Enterobacteriaceae. In C. burnetii, phase variation has been demonstrated to be due to differences in LPS. Phase I has been shown to contain a unique disaccharide galactosaminuronyl glucosamine and 9 unidentified components in addition to the components of phase II LPS.¹ Organisms with the phase I phenotype are the infectious and virulent form found in the environment. Organisms with the phase II phenotype are observed only during repeated subculture in laboratory chick embryo or cell culture systems;²⁷ they have a chemically simpler LPS¹ and several deletions in the genome.^32,92 Phagocytosis of phase I, but not phase II, organisms by macrophages involves an interaction between the bacterial LPS and Toll-like receptor 4. This mechanism also stimulates F-actin reorganization of the host cells and stimulates the release of type 1 cytokines including IFNγ and TNF.³⁰ This interaction appears important in the initial priming of the immune response and could provide an explanation for the limited protection of vaccines based on potential virulence genes (omp1, HspB, Pmm, Fbp, Orf 410, Crc, CbMip, MucZ, P28) singly and in combinations but containing no LPS.^47,89,102In addition to its antigenic phase variation, C. burnetii occurs in 2 morphologic forms, a large-cell variant and a small-cell variant. These forms differ antigenically due to differences in the proteins expressed on their surface. It has been suggested that the resistance of C. burnetii to host defense mechanisms may be enhanced by antigenic differences between the different developmental forms.^57,94 The small-cell morphologic form is highly resistant to destruction by chemical and environmental factors and is likely the transmissible form of the pathogen.^15,67 After infection, which generally occurs by inhalation of the small-cell form, the organisms are taken up by host alveolar macrophages.⁸¹ Morphogenesis from the small-cell to large-cell form then occurs, the large-cell variant being the replicative form of the organism.¹⁵ These organisms then replicate within parasitophorous vacuoles.⁵⁰ As the organisms enter the stationary phase of their growth within the cell, they condense back into the small-cell form.¹⁵ During replication within the host cell, the organism subverts cellular processes though active mechanisms to avoid and modify the host immune response.⁵⁰ C. burnetii possesses a type IV secretion system, and the proteins that cause this subversion are likely delivered to the host cell by this machinery.^50,93Because C. burnetii is an obligate intracellular organism, it has only been possible to study the organism within living animal hosts. Host-cell–free growth of the organism has been reported recently,⁶² but the technique has yet to be exploited fully. Cell-culture–based in vitro systems remain limited in the study of C. burnetii, given that the organism soon reverts to the avirulent (at least in immunocompetent hosts) phase II form (characterized by the loss of the phase I LPS phenotype) in these systems.¹⁰ A key problem in comparing models of C. burnetii infection is related to the organism''s intracellular nature, which complicates attempts to count the organisms used for infection. The literature reflects this difficulty in the fact that there are many different methods used (including plaque assay in primary cell cultures, median infectious doses in chick eggs or mice, and median lethal dose in SCID mice) and no way to directly compare them.     

A new plasmid (QpDV) common to Coxiella burnetii isolates associated with acute and chronic Q fever

Abstract Genetic studies of Coxiella burnetii strains suggested the possibility of differentiating new isolates according to their plasmid DNA content. Virulence and/or clinical manifestations ('chronic' and 'acute' Q fever) had been claimed to correlate with this plasmid typing. A new plasmid, named QpDV, was found to be common to C. burnetii isolates obtained from acute and chronic Q fever. According to the results obtained, plasmid usage for detection and differentiation of respective pathovars of C. burnetii and the correlation between gene specificity and pathovar has to be revised. Closer studies suggested a common origin of C. burnetii plasmids, but also showed some differences characteristic for each plasmid, probably reflecting divergent evolution.     

Animal models in Q fever: pathological responses of inbred mice to phase I Coxiella burnetii

The susceptibility of inbred strains of mice to infection by phase I Coxiella burnetii, the aetiological agent of Q fever, was investigated by evaluating morbidity, mortality, antibody production and in vitro proliferative responses of splenic lymphocytes. Among the 47 strains of mice tested for morbidity and mortality to C. burnetii infection, 33 were resistant, 10 were of intermediate sensitivity, and four were sensitive. A/J mice exhibited the highest mortality, and surviving mice of this strain yielded high concentrations of viable rickettsiae from essentially all organs for more than 3 weeks after inoculation. However, A/J mice developed a protective immune response after vaccination with inactivated C. burnetii cells. Induction of gross pathological responses and antibody production were similar in sensitive mice (strain A/J) and resistant mice (strain C57BL/6J). The LD50 of phase I C. burnetii for A/J mice was about 1000-fold lower than that for the more resistant C57BL/6J mice. Mice of both strains developed antibody titres against phase I cells, phase II cells, and phase I lipopolysaccharide after the injection of one or more viable phase I organisms of C. burnetii; five or more rickettsiae caused splenomegaly that was almost proportional to the infecting dose. Suppression of in vitro proliferative responses of splenic lymphocytes to concanavalin A, a T-cell mitogen, was apparent after infection of sensitive A/J mice with as few as one to five phase I micro-organisms. However, suppression of proliferation of splenic lymphocytes from resistant C57BL/6J mice required 10(7) phase I C. burnetii.     

Detection of Coxiella burnetii DNA on small-ruminant farms during a Q fever outbreak in the Netherlands

During large Q fever outbreaks in the Netherlands between 2007 and 2010, dairy goat farms were implicated as the primary source of human Q fever. The transmission of Coxiella burnetii to humans is thought to occur primarily via aerosols, although available data on C. burnetii in aerosols and other environmental matrices are limited. During the outbreak of 2009, 19 dairy goat farms and one dairy sheep farm were selected nationwide to investigate the presence of C. burnetii DNA in vaginal swabs, manure, surface area swabs, milk unit filters, and aerosols. Four of these farms had a positive status during the Coxiella burnetii bulk milk monitoring program in 2009 and additionally reported abortion waves in 2008 or 2009. Eleven farms were reported as having positive bulk milk only, and five selected (control) farms had a bulk milk-negative status in 2009 and no reported Q fever history. Screening by quantitative PCR (qPCR) revealed that on farms with a history of abortions related to C. burnetii and, to a lesser extent, on farms positive by bulk milk monitoring, generally higher proportions of positive samples and higher levels of C. burnetii DNA within positive samples were observed than on the control farms. The relatively high levels of C. burnetii DNA in surface area swabs and aerosols sampled in stables of bulk milk-positive farms, including farms with a Q fever-related abortion history, support the hypothesis that these farms can pose a risk for the transmission of C. burnetii to humans.     

Genetic diversity of the Q fever agent, Coxiella burnetii, assessed by microarray-based whole-genome comparisons

Coxiella burnetii, a gram-negative obligate intracellular bacterium, causes human Q fever and is considered a potential agent of bioterrorism. Distinct genomic groups of C. burnetii are revealed by restriction fragment-length polymorphisms (RFLP). Here we comprehensively define the genetic diversity of C. burnetii by hybridizing the genomes of 20 RFLP-grouped and four ungrouped isolates from disparate sources to a high-density custom Affymetrix GeneChip containing all open reading frames (ORFs) of the Nine Mile phase I (NMI) reference isolate. We confirmed the relatedness of RFLP-grouped isolates and showed that two ungrouped isolates represent distinct genomic groups. Isolates contained up to 20 genomic polymorphisms consisting of 1 to 18 ORFs each. These were mostly complete ORF deletions, although partial deletions, point mutations, and insertions were also identified. A total of 139 chromosomal and plasmid ORFs were polymorphic among all C. burnetii isolates, representing ca. 7% of the NMI coding capacity. Approximately 67% of all deleted ORFs were hypothetical, while 9% were annotated in NMI as nonfunctional (e.g., frameshifted). The remaining deleted ORFs were associated with diverse cellular functions. The only deletions associated with isogenic NMI variants of attenuated virulence were previously described large deletions containing genes involved in lipopolysaccharide (LPS) biosynthesis, suggesting that these polymorphisms alone are responsible for the lower virulence of these variants. Interestingly, a variant of the Australia QD isolate producing truncated LPS had no detectable deletions, indicating LPS truncation can occur via small genetic changes. Our results provide new insight into the genetic diversity and virulence potential of Coxiella species.     

Isolation of a Coxiella burnetii strain that has low virulence for mice from a patient with acute Q fever

Coxiella burnetii was isolated from a patient with Q fever. It could not be determined whether this was an imported case or an indigenous one. Identification of the isolate was made by electron microscopic morphology and the indirect fluorescent antibody test with convalescent-phase serum from a Q fever patient having a known titer of antibody to C. burnetii. The isolated strain, named TK-1, caused no symptoms in ddY and BALB/c mice except when the mice were treated with cyclophosphamide.     

Protein synthesis by intact Coxiella burnetii cells.

Coxiella burnetii was isolated from persistently infected fibroblast host cells by a rapid mechanical lysis technique. Macromolecular synthesis was initiated in these otherwise dormant cells by incubation at pH 4.5. The synthesis of protein proceeded for as long as 24 h. Initiation of protein synthesis in C. burnetii was dependent upon RNA synthesis. Approximately 24 species of polypeptides were synthesized, and some of these appeared to be major synthetic products. Increases in protein biomass of 15 to 30% were calculated to occur during incubation. Inhibition of DNA synthesis affected protein synthesis after 12 h of incubation. The results suggest that although these parasitic bacteria did not grow in the axenic media devised, significant biosynthetic processes occurred.