Lampreys, “Living Fossils,” in Research on Early Development and Regeneration in Vertebrates

Russian Journal of Developmental Biology - Agnathans, the most ancient of the extant vertebrates, evoke steadily increasing interest as the object of research on the basic processes of vertebrate...     

Petiole mechanics,light interception by Lamina,and “Economy in Design”

Summary Computer simulations were used to assess the influence of palmate leaf morphology, decussate phyllotaxy, and the elastic moduli of petioles on the capacity of turgid and wilted twigs ofAesculus hippocastanum to intercept direct solar radiation. Leaf size, morphology, orientation, and the Young's and shear moduli (E and G) of petioles were measured and related to leaf position on 8 twigs whose cut ends were placed in water (turgid twigs) and 8 twigs dried for 8 h at room temperature (wilted twigs). Petioles mechanically behaved as elastic cantilevered beams; the loads required to shear petioles at their base from twigs were correlated with the cross-sectional areas of phyllopodia but not with petiole length or tissue volume. Empirically determined morphometric and biomechanical data were used to construct average turgid and wilted twigs. The diurnal capacity to intercept direct sunlight for each was simulated for vertically oriented twigs for 15 h of daylight, 40° N latitude. The daily integrated irradiance (DII) of the wilted twig was roughly 3% less than that of the otherwise comparable twig bearing turgid leaves. Simulations indicated that the orientation of turgid leaves did not maximize DII. More decumbent (wilted) petioles increased DII by as much as 4%. Reduction in the girth, E, or G of petioles, or an increase in petiole length or the surface area of laminae (with attending increase in laminae weight), increased petiolar deflections and DII. Thus, the mechanical design of petioles ofA. hippocastanum was found not to be economical in terms of investing biomass for maximum light interception.     

The “ethnic” in Indonesia’s communal conflicts: violence in Ambon,Poso, and Sambas

ABSTRACT

This article looks at the communal violence in Ambon, Poso, and Sambas in post-Suharto Indonesia from a comparative perspective. It explores why Ambon and Poso were seen as religious while Sambas was seen as ethnic despite the fact that in all three conflicts different religions and ethnicities fought each other. Examining the “ethnic” elements, this article advances three arguments: First, that the Poso and Ambon conflicts were no less ethnic than the Sambas conflict as they had similar “ethnic causes”. Second, that the religious narrative dominated in Ambon and Poso because it reflected the Islamic resurgence in Indonesia since the 1990s while the narrative in Sambas reflected that it was the latest round of a pre-existing anti-Madurese conflict which had already been “defined” as “ethnic”. Third, that the narratives were framed strategically, thus influencing the trajectory of the conflict but also responding to it.     

Being in a “Green” Building Elicits “Greener” Recycling,but Not Necessarily “Better” Recycling

Previous observational work revealed that transient populations in a sustainable building disposed of waste more accurately when compared to patrons in a non-sustainable building. The current study uses an experimental design to replicate this observed effect and to investigate whether or not the built environment influences motivational factors to impact behavior. We find support that a building designed and built to communicate an atmosphere of sustainability can influence waste disposal behavior. Participants in the sustainable building used the garbage receptacle significantly less and compensated by tending to select the containers and organics receptacle more, which actually resulted in more errors overall. Our findings suggest that building atmospherics can motivate people to recycle more. However, atmospherics alone do not appear to be sufficient to elicit the desired performance outcome.     

The ultrastructure of holdfasts, “rhizoids”, and “slime tracks” in thraustochytriaceous fungi and Labyrinthula spp.

Summary The fine structure of the holdfasts or rhizoids is described for the thraustochytriaceous organisms, Thraustochytrium motivum, Schizochytrium aggregatum, and an unidentified organism, denoted T-20, which resembles S. aggregatum and Labyrinthula spp. Labyrinthula algeriensis and L. minuta slime track ultrastructure is also described. The holdfasts, rhizoids, and tracks have the same basic fine structure and are collectively termed ectoplasmic nets. They are delimited by a unit membrane which is in continuity with the plasmalemma, contain no cytoplasmic organelles only membrane-limited cisternae, and contain a fibrogranular ground substance. The nets appear to arise from one or as many as 20 organelle complexes consist of an approximately disk-shaped electron-dense granular aggregate in which are embedded portions of cisternae of the endoplasmic reticulum or perinuclear clear continuum. The cisternae appear to contribute small (ca. 17 nm diameter) vesicles to the granular aggregate which coalesce to form internal membranes of the net elements. The sagenogenetosome underlies the plasmalemma where it evaginates to form the delimiting membrane of the main trunk element of the net. No continuous membrane separates the net contents from the cytoplasm, only the granular aggregate.In L. algeriensis, L. minuta, and T-20 the net is necessary for motility of nonflagellated, nonamoeboid cells. Presence of the nets is not associated with motility in S. aggregatum and T. motivum. The possible taxonomic significance of the observations is discussed.Contribution No. 456, Virginia Institute of Marine Science, Gloucester Point, Virginia 23062.Supported in part by the Oceanography Section, National Science Foundation, NSF Grant GA-31014.     

A Nonquiescent “Idling” Population State in Drug-Treated,BRAF-Mutated Melanoma

Targeted therapy is an effective standard of care in BRAF-mutated malignant melanoma. However, the duration of tumor remission varies unpredictably among patients, and relapse is almost inevitable. Here, we examine the responses of several BRAF-mutated melanoma cell lines (including isogenic subclones) to BRAF inhibitors. We observe complex response dynamics across cell lines, with short-term responses (<100 h) varying from cell line to cell line. In the long term, however, we observe equilibration of all drug-treated populations into a nonquiescent state characterized by a balanced rate of death and division, which we term the “idling” state, and to our knowledge, this state has not been previously reported. Using mathematical modeling, we propose that the observed population-level dynamics are the result of cells transitioning between basins of attraction within a drug-modified phenotypic landscape. Each basin is associated with a drug-induced proliferation rate, a recently introduced metric of an antiproliferative drug effect. The idling population state represents a new dynamic equilibrium in which cells are distributed across the landscape such that the population achieves zero net growth. By fitting our model to experimental drug-response data, we infer the phenotypic landscapes of all considered melanoma cell lines and provide a unifying view of how BRAF-mutated melanomas respond to BRAF inhibition. We hypothesize that the residual disease observed in patients after targeted therapy is composed of a significant number of idling cells. Thus, defining molecular determinants of the phenotypic landscape that idling populations occupy may lead to “targeted landscaping” therapies based on rational modification of the landscape to favor basins with greater drug susceptibility.     

Lactic acid bacteria in fermented fishery product, “burong bangus”

Analyses of the microflora of “burong bangus”, a traditional fermented fish and rice product of the Philippines, revealed that a sequential type of fermentation with overlapping growth takes place. Streptococcus initiated the fermentation process and generally persisted up to the latter part of the fermentation. Pediococcus appeared next, but comprised only a small percentage of the microflora. Both Leuconostoc and Lactobacillus appeared on the 3rd day and were generally present up to the end of the fermentation, with Lactobacillus predominating among the microflora in the final days. In the course of characterizing the lactic acid bacteria involved in the fermenting rice-fish mixture, some isolates were found to be capable of hydrolyzing starch. These were revealed to be Gram positive, rod-shaped and catalase negative. Tentative identification of one of the isolates, L137, showed that this strain possesses very similar characteristics to those of Lactobacillus plantarum and Lactobacillus coryniformis subsp. coryniformis. The % G+C of L137 was 45.2 while those of L. plantarum and L. coryniformis subsp. coryniformis are 45.1 and 45.0 respectively. However, L137 differs from the other two in its ability to utilize starch.     

The “Pre-Molten Globule,” a New Intermediate in Protein Folding

In vitro folding studies of several proteins revealed the formation, within 2–4 msec, of transient intermediates with a large far-UV ellipticity but no amide proton protection. To solve the contradiction between the secondary structure contents estimated by these two methods, we characterized the isolated C-terminal fragment F2 of the tryptophan synthase β₂ subunit. In β₂, F2 forms its tertiary interactions with the F1 N-terminal region. Hence, in the absence of F1, isolated F2 should remain at an early folding stage with no long-range interactions. We shall show that isolated F2 folds into, and remains in, a “state” called the pre-molten globule, that indeed corresponds to a 2- to 4-msec intermediate. This condensed, but not compact, “state” corresponds to an array of conformations in rapid equilibrium comprising native as well as nonnative secondary structures. It fits the “new view” on the folding process.     

Why “Winter” Vomiting Disease? Seasonality, Hydrology, and Norovirus Epidemiology in Toronto, Canada

Norovirus is a common cause of gastroenteritis, and is thought to be the causative agent in 68–90% of all gastroenteritis outbreaks. The seasonality of disease occurrence is sufficiently stereotyped to result in this disease being dubbed “winter vomiting disease.” The genesis of this seasonality has been obscure. We sought to identify environmental factors associated with Norovirus outbreaks in Toronto, Canada. We evaluated 253 outbreaks of gastroenteritis linked to Norovirus between November 2005 and March 2008. Poisson regression models were constructed to evaluate associations between average environmental exposures and case counts. A case-crossover approach was used to evaluate associations between acute changes in environment and outbreak risk. Case-crossover analysis indicated an association between low Lake Ontario temperature (≤4°C) (hazard ratio [HR], 5.61 [95% CI, 2.81–11.12]) and high flow (>2.5 m³/s) in the Don River (HR, 3.17 [95% CI, 2.30–4.36]), 1–7 days prior to case occurrence. For both exposure variables, the highest hazard ratios were found 24–48 h prior to case onset. Regression models provided further support for these patterns. The association between local watershed conditions and Norovirus outbreak risk suggest a source-water reservoir for this pathogen. We hypothesize that the reservoir may be maintained through the discharge of wastewater containing virus particles; wintertime seasonality may be explained by enhanced viral persistence at low temperatures.     

From Village Land to “Native Reserve”: Changes in Property Rights in Sabah, Malaysia, 1950–1996

In this paper I explore the interactions between colonial law and native customary law in the formation of contemporary property regimes in a rural village in Sabah, Malaysia, that I call Govuton. Govuton was one of the few known villages in Sabah that rejected colonial policies of land settlement that focused on settling private, individual property claims. Instead, village leaders negotiated with colonial officials for their village lands to be legally designated as corporately-held village property under the title of Native Reserve. While the Native Reserve served to protect village access to jointly-held property in the colonial period, in the contemporary period new land disputes are arising as different images of community and tradition are strategically deployed by villagers in order to win struggles over rights of ownership and access to resources in the current political economy. By adopting such an historical and site-specific view of the transformation of property rights several broader themes regarding the relationship between state and society and natural resource management emerge. First, this case study challenges the idea the colonial governments were a monolithic force imposing laws on an unresisting native population. Second, the notion that the community is an appropriate unit for natural resource management is questioned. And finally, this case study raises the possibility that the current trend toward strengthening or reinvigorating native customary law is not always in the interests of native peoples with diverse interests in natural resource management.     

Ecological impact of a fresh-water “reef kill” in Kaneohe Bay,Oahu, Hawaii

Storm floods on the night of December 31, 1987 reduced salinity to 15 in the surface waters of Kaneohe Bay, resulting in massive mortality of coral reef organisms in shallow water. A spectacular phytoplankton bloom occurred in the following weeks. Phytoplankton growth was stimulated by high concentrations of plant nutrients derived partially from dissolved material transported into the bay by flood runoff and partially by decomposition of marine organisms killed by the flood. Within two weeks of the storm, chlorophyll a concentrations reached 40 mg m^-3, one of the highest values ever reported. The extremely rapid growth rate of phytoplankton depleted dissolved plant nutrients, leading to a dramatic decline or crash of the phytoplankton population. Water quality parameters returned to values approaching the long-term average within 2 to 3 months. Corals, echinoderms, crustaceans and other creatures suffered extremely high rates of mortality in shallow water. Virtually all coral was killed to depths of 1–2m in the western and southern portions of the bay. Elimination of coral species intolerant to lowered salinity during these rare flood events leads to dominance by the coral Porites compressa. After a reef kill, this species can eventually regenerate new colonies from undifferentiated tissues within the dead perforate skeleton. Catastrophic flood disturbances in Kaneohe Bay are infrequent, probably occurring once every 20 to 50 years, but play an important role in determination of coral community structure. The last major fresh water reef kill occurred in 1965 when sewage was being discharged into Kaneohe Bay. Coral communities did not recover until after sewage abatement in 1979. Comparison between recovery rate after the two flood events suggests that coral reefs can recover quickly from natural disturbances, but not under polluted conditions.     

Megaspore development in Selaginella. I. “Wicks”, their presence,ultrastructure, and presumed function

Summary Structures have been found in the locular space between the tapetal cells and megaspores in Selaginella argentea and S. kraussiana that enter the megaspore wall and extend to the plasma membrane of the megaspore cytoplasm. We have called these structures wicks. Unless special fixation procedures are used wicks are either very poorly preserved or not apparent. Wicks appear to be routes for the transport of materials from the tapetum to developing megaspores. The entry of the wicks into the megaspore wall and their passage throughout the wall implies that the megaspore wall of Selaginella is a three-dimensional mesh-work of inter-connecting spaces. Wicks have several macromolecular-sized subunits, and the results of our histochemical reactions indicated the presence of glycoprotein and/or mucopolysaccharide. X-ray microanalysis of the S. convoluta exospore showed that silicon is present in rod-shaped structures between units of the exospore in mature megaspores. Because of the size and form of the structures between the exospore units we consider that they are remnants of wicks stabilized by silicon.Present address:Cátedra de Palinologia, Museo de La Plata, Paseo del Bosque s/nro., 1900 La Plata, Argentina.     

Silvering and gill “mitochondria-rich” cells in the eel,Anguilla anguilla

Gills of typical yellow and silver ells, Anguilla anguilla L., were examined by light and electron microscopy. In both eel types, mitochondria-rich cells were located in the epithelium covering the primary lamellae and consisted ofchloride cells and accessory cells. As compared to yellow eels, the primary gill epithelium of silver eels was thicker and contained larger and more numerous chloride cells with enlarged mitochondria. The accessory cells also increased in number but did not show significant modifications in their size or ultrastructural features. These observations indicate that, as far as mitochondria-rich cells are concerned, the silvering process in eels would be equivalent to smoltification in salmonids. It corresponds to a preparation for seawater life and is probably controlled by hormonal factors.     

CHD7 Deficiency in “Looper”, a New Mouse Model of CHARGE Syndrome,Results in Ossicle Malformation,Otosclerosis and Hearing Impairment

CHARGE syndrome is a rare human disorder caused by mutations in the gene encoding chromodomain helicase DNA binding protein 7 (CHD7). Characteristics of CHARGE are varied and include developmental ear and hearing anomalies. Here we report a novel mouse model of CHD7 dysfunction, termed Looper. The Looper strain harbours a nonsense mutation (c.5690C>A, p.S1897X) within the Chd7 gene. Looper mice exhibit many of the clinical features of the human syndrome, consistent with previously reported CHARGE models, including growth retardation, facial asymmetry, vestibular defects, eye anomalies, hyperactivity, ossicle malformation, hearing loss and vestibular dysfunction. Looper mice display an otosclerosis-like fusion of the stapes footplate to the cochlear oval window and blepharoconjunctivitis but not coloboma. Looper mice are hyperactive and have vestibular dysfunction but do not display motor impairment.     

The development of in vitro and in vivo anti-tumor cytotoxicity in noncytotoxic,MOPC-315-tumor-bearer,spleen cells “educated” in vitro with MOPC-315 tumor cells

Summary Spleen cells from mice bearing various sizes of MOPC-315 plasmacytoma tumors were not cytotoxic in the ⁵¹Cr release assay or the local adoptive transfer assay. These noncytotoxic spleen cells became cytotoxic, however, upon in vitro cocultivation with MOPC-315 tumor cells. The maximal level of in vitro anti-tumor cytotoxicity (⁵¹Cr release) with in vitro educated tumor-bearer spleen cells was obtained on the fifth day of the cocultivation and was equal to or lower than the level of cytotoxicity seen with in vitro educated normal spleen cells. On the other hand, the level of in vivo anti-tumor cytotoxicity (Winn assay) achieved with tumor-bearer spleen cells educated in vitro was at least equal to, but usually greater than the level of anti-tumor cytotoxicity obtained with normal spleen cells educated in vitro. Thus, in vitro education can generate anti-tumor cytotoxicity in autochthonous lymphoid cells from tumor-bearing hosts. Such educated histocompatible cells should be useful for immunotherapy regimens that might be applicable to man.     

“Realism” and “relevance” in gaming simulations

How useful are gaming simulations for the study of problems that interest human ecologists? Anatol Rapoport, a principal contributor to the development of game theory, raised this issue with the editors of Human Ecology,who in turn invited him to express his views in print. In brief, Dr. Rapoport calls into question the real-world applicability of gaming simulations, and explores its limitations. The educational function of simulation, he argues, should not be confused with the research aims of laboratory experimentation. The addition of “realistic” conditions in a gaming simulation merely complicates the experiment and reduces its theoretical significance. It does, however, have some pedagogical utility, whose implications have not yet been adequately taken into account. Dr. Rapoport considers this matter with reference to the problem of “social traps,” such as the “tragedy of the commons,” an issue which concerns many human-ecology researchers.     

Tissue distribution of the “N-end rule” ubiquitin-conjugating enzyme, HR6, in the rat

The conjugation of multiple ubiquitin molecules is required for recognition and degradation of a protein by the proteasome. The ubiquitination pathway responsible for the bulk of constitutive protein degradation targets proteins carrying basic or large hydrophobic amino acids at the N-terminus. In mammalian cells, this N-end rule pathway requires the ubiquitin-conjugating enzyme HR6. Until now, it has not been known which mammalian tissues and cell types predominantly utilize this pathway for degradation. Therefore, the distribution and intracellular localization of HR6 was determined by indirect immunofluorescence techniques and protein blotting of adult rat tissues. Intense immunoreactivity against HR6 was detected in various epithelia, muscle, testis, peripheral neurons, chromaffin cells and macrophages, whereas lower HR6 protein levels were found in the gut or in the kidney. Autonomic and sensory neurons, glandular cells and spermatocytes revealed prominent nuclear HR6 immunoreactivity. Plasma membrane labeling was observed in peripheral neurons, spermatocytes and skeletal muscle cells. Smooth muscle cells, macrophages, endothelial and epithelial cells exhibited primarily cytoplasmic staining. The clear differences in the regional and intracellular distribution of HR6 are suggestive for the involvement of N-end rule protein degradation in various physiological processes dependent on cell type and subcellular structure.