中国专利基因数据库的创建

创建了中国专利基因数据库NASDAP(http://nasdap.generank.org/).整合了专利序列、专利微阵列、专利基序和专利单核苷酸多态性(singlenucleotidepolymorphism,SNP)等专利对象,并实现对上述对象的BLAST检索或基序扫描服务.这为相关研究的立项、基因研发状态追踪以及基因专利申请和审批等工作提供了生物信息平台,并可为药物开发、疾病诊断和农业等生命科学相关研究的思路启发及知识产权战略制定等方面工作提供参考.     

加强对基因专利的研究

基因专利是生物技术产业知识产权保护的最主要形式,被认为是生物技术产业发展的金钥匙。谁握有基因专利,谁就将占有生物技术产业发展的空间、占有未来的财富。近几年,随着人类基因组、基因功能研究的迅速进展,极大地激发了投资者的想象空间和对获取基因专利的高涨热情。前几年曾出现了以跑马圈地的方式申报基因专利的高潮,我国也曾有过一次申请上百条基因专利的例子。目前,在美国已授权了2万余个基因或基因相关分子的专利.     

中国生物材料专利保护及其现状分析

本文叙述了我国生物材料专利制度的变迁,耐我国生物材料的专利保护范围进行了论述,对生物材料的保藏问题进行了说明;对我国生物材料保护制度进了论述,并对我国生物材料领域的专利现状进行了分析,就如何加强我国生物材料的专利保护提出几点建议。[编者按]     

国内外CRISPR-Cas基因编辑技术主要申请人专利布局分析

CRISPR-Cas系统作为全球应用范围最广的基因编辑工具,是全球顶尖研究机构与企业科技创新与技术布局的重点。本文基于CRISPR-Cas基因编辑领域相关专利数据,在分析全球与我国CRISPR-Cas基因编辑技术相关专利发展态势的基础上,筛选具有代表性的专利申请人进行重点研究,揭示了国内外基因编辑领域的发展态势与创新布局特点,并对进一步优化我国该领域技术布局策略提出启示与建议。     

中国生物材料专利保护及其现状分析

本文叙述了我国生物材料专利制度的变迁,耐我国生物材料的专利保护范围进行了论述,对生物材料的保藏问题进行了说明;对我国生物材料保护制度进了论述,并对我国生物材料领域的专利现状进行了分析,就如何加强我国生物材料的专利保护提出几点建议。     

基于专利分析的肿瘤基因PCR诊断技术研究

肿瘤目前成为人类健康和生命的重要危胁,肿瘤基因诊断是对肿瘤的各种原癌基因、抑癌基因进行检测,聚合酶链反应(polymerase chain reaction,PCR)技术是目前临床基因诊断应用最广泛的诊断技术,具有普及率高、特异性好、简便快捷等特点。肿瘤基因PCR诊断技术可以用于已知基因突变的检测,快速了解突变状态,有效制定治疗方案,为肿瘤患者带来福音。本研究主要基于专利数据,对肿瘤基因PCR诊断技术进行分析,探讨了全球与中国在肿瘤基因PCR诊断技术领域的发展现状与趋势。在Innography数据库共检索到PCR技术相关专利16,939件,专利家族6,285件。在肿瘤基因PCR诊断技术领域中,荧光定量PCR技术占比较大,约占肿瘤基因PCR诊断技术总量的三分之一。从技术技术生命周期来看,肿瘤基因PCR诊断技术目前仍处在高速发展阶段。美国是肿瘤基因PCR诊断技术的发展领先国家。该技术的主要来源国为美国,全球42.09%的专利来自美国,同时美国也是同族专利的主要分布地区。在肿瘤基因PCR诊断技术领域,排名前15位的顶尖机构中,来自美国的机构有7所。中国在肿瘤基因PCR诊断技术领域起步较晚,但发展迅速,在该技术领域申请的专利数量仅次于美国。中国申请的肿瘤基因PCR诊断技术的专利绝大多数都只在中国进行专利保护,并没有布局全球市场的意愿。     

Cry基因家族的专利分布研究

从苏云金芽孢杆菌(Bacillus thuringiensis)提取的Cry基因,是目前国内外开发应用最为广泛的抗虫基因,具有巨大的潜在经济价值。自上世纪80年代以来,美欧日等发达国家加速利用知识产权在Cry基因技术领域布阵设防,建立了严密的知识产权攻防体系,掌控着相关产业发展的主动权。通过检索搜集全球范围内的Cry基因专利信息,分析研究了Cry基因家族的专利分布状况,借此对我国在制定技术研发和产业化策略时,有效规避知识产权陷阱提供决策依据。     

基因问题可专利性的再探讨——以欧洲法为视角

专利法的立法目的就是促进创新,而基因问题的立法又关系到整个社会的伦理观取舍,因而各国目前的立法都不尽相同。本文以欧盟的立法为出发点,围绕基因问题中的专利授予展开讨论,介绍基因专利授予的困境以及人们对此的担忧,最后对Brustle案的再探讨说明道德因素对于专利授予的重要性。     

从Myriad案谈基因专利的正当性及美国对基因专利授权实质性要件分析

按照专利制度构建的本质,基因专利的作用在于激励产业创新,促进基因研究的发展。但基因专利从产生以来就一直存在着争议。2011年美国Myriad案对分离DNA序列的可专利性具有不同的观点,从Myriad I案认为分离的DNA是不可专利的客体,到Myriad II上诉案中联邦巡回上诉法院推翻地方法院的观点,认为分离的DNA具有不同的化学结构,满足专利客体的适格性,但同时也反射出了对DNA序列可专利性的怀疑。Myriad案引起了美国、欧洲和澳大利亚司法审判中就基因专利适格性问题的较大争议。本文结合美国Myriad案来分析DNA序列作为专利客体的适格性以及目前美国对基因专利授权的实质性条件。     

转基因玉米生物育种技术的专利分析及产业发展建议

通过研究转基因玉米育种技术的专利文献,可分析各国转基因玉米生物育种技术的发展趋势、研发领域的分布、跨国种业集团的产业布局。利用MS Excel和Innography等分析软件,采用图表分析方法对世界转基因玉米生物育种的专利文献进行定性分析和定量分析。结果发现,中国是转基因玉米生物育种的主要研发国家之一,其中基因编辑技术处于领先地位;我国创新主体仍以大专院校、科研院所为主,缺乏科研成果的转化动力,需要加大对转基因技术产业的扶植力度和知识产权服务。研究结果旨在为研究者确定研究方向、跟踪竞争对手的研究进展、分析跨国种业集团的产业布局、制定产业发展政策等提供参考建议。     

鸡矢藤注射液和野木瓜注射液对大鼠足底皮下化学组织损伤诱致自发痛、痛敏和炎症的作用

研究市售中药制剂鸡矢藤注射液和野木瓜注射液有无抗伤害及抗炎作用。采用两种持续性痛动物实验模型——蜜蜂毒(bee venom,BV)模型和福尔马林(formalin,F)模型,评价鸡矢藤注射液和野木瓜注射液系统给药对持续性自发痛反应、原发性热和机械痛敏及炎症反应的作用效果。成年清醒大鼠足底皮下注射BV(0．2％,50μl)不仅可诱发注射侧长达1h以上的、持续的、单相性的自发痛反应(其表现为自发缩足反射行为)和之后出现的持续3—4d的原发性热和机械痛敏现象,而且注射爪出现明显的红、肿等炎症反应。皮下注射F(2．5％,50μl)则产生双相性自发痛反应。与盐水组比较,致痛前系统给予0．32、1．6和9．0ml／kg三个剂量的500％鸡矢藤注射液或250％野木瓜注射液,对BV或F诱致的1h自发缩足反射次数具有剂量依赖性抑制作用;致痛5min后分别给予鸡矢藤或野木瓜注射液对BV或F诱发的自发痛反应也产生显著的抑制作用。然而,致痛前或致痛后静脉注射鸡矢藤注射液或野木瓜注射液对BV诱致的原发性热／机械痛敏及炎症反应均无明显的抑制作用。纳洛酮(一种非选择性的阿片受体拮抗剂)不能翻转鸡矢藤或野木瓜注射液对BV产生的自发痛反应的镇痛作用,提示其镇痛作用不是由内源性阿片受体介导。本研究结果证实鸡矢藤或野木瓜注射液能预防和缓解临床持续性自发痛,但是对原发性热／机械痛敏及炎症反应均无抗伤害效应和抗炎作用。在中药镇痛抗炎有效成分的筛选和评价中,BV模型是一个理想的实验动物模型。     

刺盘孢菌的蛋白互作预测及侵染早期共表达模块分析

刺盘孢菌是一类重要的植物病原真菌,在全球范围内危害众多单双子叶植物。有许多研究对病菌的侵染模式进行了探索,但仍未阐明其确切的分子机制。本研究在预测病菌蛋白互作的基础上,结合表达谱数据对病菌在活体生存环境下的共表达模块进行挖掘和分析,以期为分子机制的研究提供新的线索。通过同源映射法和结构域法,预测得到刺盘孢菌的4 288个蛋白之间存在41 700个潜在互作,其中39 776个互作发生于异源蛋白之间,1 924个互作发生于同一蛋白内。将蛋白互作数据分别与4个表达谱数据进行整合,构建得到离体I、离体II、活体I和活体II 4个共表达互作组。对离体和活体互作组的共有基因的表达水平进行比较分析,结果表明,与离体互作组相比,活体互作组中与翻译、蛋白代谢等有关的基因表达水平下降,与离子转运、糖物质转运等有关的基因表达水平上升,暗示了物质转运在刺盘孢菌侵染早期的重要作用。进一步对活体互作组进行模块化分析,结果表明,活体I和活体II的特异模块分别与胁迫响应、肌动蛋白纤维长度调控有关,其中胁迫响应子网是以热激蛋白Hsp70为核心的互作簇,可能参与病菌对寄主的识别与对抗;肌动蛋白纤维长度调控子网则可能与病菌菌丝在寄主细胞间的延伸有关。     

Finger joint coordination during tapping

We investigated finger joint coordination during tapping by characterizing joint kinematics and torques in terms of muscle activation patterns and energy profiles. Six subjects tapped with their index finger on a computer keyswitch as if they were typing on the middle row of a keyboard. Fingertip force, keyswitch position, kinematics of the metacarpophalangeal (MCP) and the proximal and distal interphalangeal (IP) joints, and intramuscular electromyography of intrinsic and extrinsic finger muscles were measured simultaneously. Finger joint torques were calculated based on a closed-form Newton–Euler inverse dynamic model of the finger. During the keystroke, the MCP joint flexed and the IP joints extended before and throughout the loading phase of the contact period, creating a closing reciprocal motion of the finger joints. As the finger lifted, the MCP joint extended and the interphalangeal (IP) joints flexed, creating an opening reciprocal motion. Intrinsic finger muscle and extrinsic flexor activities both began after the initiation of the downward finger movement. The intrinsic finger muscle activity preceded both the IP joint extension and the onset of extrinsic muscle activity. Only extrinsic extensor activity was present as the finger was lifted. While both potential energy and kinetic energy are present and large enough to overcome the work necessary to press the keyswitch, the motor control strategies utilize the muscle forces and joint torques to ensure a successful keystroke.     

The chemoprotective effects of IFN-α-2b on rat hepatocarcinogenesis are blocked by vitamin E supplementation

Many cancer patients receive their classical therapies together with vitamin supplements. However, the effectiveness of these strategies is on debate. Here we aimed to evaluate how vitamin E supplementation affects the anticancer effects of interferon (IFN-α) using an early-model of liver cancer development (initiation-promotion, IP). Male Wistar rats subjected to this model were divided as follows: untreated (IP), IP treated with recombinant IFN-α-2b (6.5  ×  10⁵ U/kg), IP treated with vitamin E (50 mg/kg), and IP treated with combination of vitamin E and IFN-α-2b. After treatments rats were fasted and euthanized and plasma and livers were collected. Combined administration of vitamin E and IFN-α-2b induced body weight drop, increased liver apoptosis, and low levels of hepatic lipids. Interestingly, vitamin E and IFN-α-2b combination also induced an increase in altered hepatic foci number, but not in size. It seems that vitamin E acts on its antioxidant capability in order to block the oxidative stress induced by IFN-α-2b, blocking in turn its beneficial effects on preneoplastic livers, leading to harmful final effects. In conclusion, this study shows that vitamin E supplementation in IFN-α-2b-treated rats exerts unwanted effects; and highlights that in spite of being natural, nutritional supplements may not always exert beneficial outcomes when used as complementary therapy for the treatment of cancer.     

IP(3) receptors, stress and apoptosis

Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular calcium channels that are able to release calcium from intracellular stores upon activation by IP3 and modulation by calcium. IP3 receptors are involved in variety of processes during physiological, but also in the pathophysiological states. Unraveling their regulation and function, especially under the pathological situations can result in a development of new therapeutic strategies based on the IP3 receptor′s activation and/or blocking. To the stimuli that can modulate IP3 receptors belong several stress factors (e.g. immobilization stress, oxidative stress and hypoxia) and also apoptosis. Depending on the length and strength of the stress stimulus, expression of IP3 receptors can be increased, or decreased. Therefore, in this minireview modulation of IP3 receptors by some stressors is discussed. Since it was already shown that strong hypoxia might lead to the apoptosis induction, special focus will be given to the hypoxic stress and induction of apoptosis.     

Characterization of a biological detector cell for quantitation of inositol 1,4,5-trisphosphate

Prior strategies to measure inositol 1,4,5-trisphosphate (IP(3)) in single cells either have been qualitative or have had a limited spatial resolution. Capillary electrophoresis combined with a biological detector cell has been used to quantitate IP(3) in small regions of a Xenopus oocyte. To improve the detection limits of this method, we elucidated the experimental parameters which influenced the sensitivity and reliability of the IP(3)-detector cell coupled to capillary electrophoresis. The variables which influenced the detector cell were the magnitude of the voltage drop across the detector cell, the duration of this voltage drop, the direction of fluid flow in the capillary, the concentration of free Ca(2+) around the detector cell, and the presence of protease inhibitors during permeabilization of the detector cell. For the sample volumes imposed by the capillary diameter, the detector cell acted primarily as an IP(3) mass detector rather than a concentration detector. Characterization of the experimental variables influencing the sensitivity and reliability of this detector cell has the potential to enhance other analyte measurements performed by mating capillary electrophoresis with a biological detector cell.     

Mechanism of proteasomal degradation of inositol trisphosphate receptors in CHO-K1 cells

myo-Inositol 1,4,5-trisphosphate receptor (IP3R) degradation occurs in response to carbachol (Cch) stimulation of CHO-K1 cells. The response was mediated by endogenous muscarinic receptors and was blocked by atropine or proteasomal inhibitors. We have used these cells to identify the sites of ubiquitination on IP3Rs and study the role of Ca2+ and substrate recognition properties of the degradation system using exogenously expressed IP3R constructs. Employing caspase-3 for IP3R cleavage, we show that Cch promotes polyubiquitination in the N-terminal domain and monoubiquitination in the C-terminal domain. The addition of extracellular Ca2+ to Ca2+-depleted Chinese hamster ovary (CHO) cells initiates IP3R degradation provided Cch is present. This effect is inhibited by thapsigargin. The data suggest that both a sustained elevation of IP3 and a minimal content of Ca2+ in the endoplasmic reticulum lumen is required to initiate IP3R degradation. Transient transfection of IP3R constructs into CHO cells indicated the selective degradation of only the SI+ splice variant of the type I IP3R. This was also the splice form present endogenously in these cells. A pore-defective, nonfunctional SI+ IP3R mutant (D2550A) was also degraded in Cch-stimulated cells. The Cch-mediated response in CHO cells provides a convenient model system to further analyze the Ca2+ dependence and structural requirements of the IP3R proteasomal degradation pathway.     

Akt kinase phosphorylation of inositol 1,4,5-trisphosphate receptors

A consensus RXRXX(S/T) substrate motif for Akt kinase is conserved in the C-terminal tail of all three inositol 1,4,5-trisphosphate (IP3) receptor (IP3R) isoforms. We have shown that IP3R can be phosphorylated by Akt kinase in vitro and in vivo. Endogenous IP3Rs in Chinese hamster ovary T-cells were phosphorylated in response to Akt activation by insulin. LnCAP cells, a prostate cancer cell line with constitutively active Akt kinase, also showed a constitutive phosphorylation of endogenous type I IP3Rs. In all cases, the IP3R phosphorylation was diminished by the addition of LY294002, an inhibitor of phosphatidylinositol 3-kinase. Mutation of IP3R serine 2681 in the Akt substrate motif to alanine (S2681A) or glutamate (S2681E) prevented IP3R phosphorylation in COS cells transfected with constitutively active Akt kinase. Analysis of the Ca2+ flux properties of these IP3R mutants expressed in COS cell microsomes or in DT40 triple knock-out (TKO) cells did not reveal any modification of channel function. However, staurosporine-induced caspase-3 activation in DT40 TKO cells stably expressing the S2681A mutant was markedly enhanced when compared with wild-type or S2681E IP3Rs. We conclude that IP3 receptors are in vivo substrates for Akt kinase and that phosphorylation of the IP3R may provide one mechanism to restrain the apoptotic effects of calcium.     

Bradykinin induces a rapid release of inositol trisphosphate from a neuroblastoma hybrid cell line NCB-20 that is not antagonized by enkephalin

In mouse neuroblastoma x Chinese hamster brain clonal cell line NCB-20, bradykinin (BK) receptor stimulation causes phosphoinositide hydrolysis and release of inositol phosphates. Maximum stimulation (4-fold) of [2-3H]inositol trisphosphate (IP3) release in the absence of Li+ from NCB-20's prelabelled for 20-24 hours with [2-3H]myo-inositol (15 microCi/confluent 60mm dish) occurred after 5-10 seconds of bradykinin exposure, with an EC50 of approximately 100nM. Inositol bisphosphate (IP2) and inositol monophosphate (IP1) also showed increases (2.9-fold and 1.5 fold, respectively), with peaks at 15-20 seconds and 50 seconds, respectively. Under these same conditions, D-Ala2-D-Leu5 enkephalin (DADLE) (10 microM), an opiate agonist with 2nM affinity, gave no stimulation of IP3 release. Furthermore, it did not block BK-initiated release, both when applied simultaneously with BK and when cells were preincubated with DADLE for 100 minutes to lower cyclic AMP levels. These results show that pain-inducing BK has a major acute stimulatory effect on receptor-phospholipase C-coupled IP3 release, the opioid peptide DADLE has no such effect and, DADLE does not block the IP3 release induced by BK.     

Can China achieve its 2020 carbon intensity target? A scenario analysis based on system dynamics approach

Since Chinese government put a target to decrease carbon intensity 40–45% in 2020 than that of 2005, a series of emission mitigation measures has been implemented. Against this backdrop, we established a system dynamics model to investigate the energy consumption, CO₂ emission and mitigation options in China. The results show that the carbon intensity will reduce by 22.68%, 26.84%, 43.77%, and 46.65% in BaU (Business as usual), NEP (New energy policy), CTP (Carbon tax policy) and IP (Integrated policy) scenarios in 2020 compared with 2005. Obviously, Chinese government can accomplish the target under CTP and IP scenarios. Moreover, the “inflection point” in CTP and IP scenarios reveals the decision-making process between tax burden and emission reduction behavior. A brief analysis of interactive effect is accomplished by equilibrium theory and simulation results. It shows that the interactive effect of two policies, which act on the same object with same action direction, is weaker than the aggregation of two separated effects, whereas it is larger than any individual effect. In a nutshell, these findings are helpful for policymakers to optimize their policy decision-making to cut CO₂ emissions.