Allobaculum stercoricanis gen. nov., sp. nov., isolated from canine feces

Morphological, biochemical, and molecular genetic studies were performed on an unknown anaerobic, catalase-negative, non-spore-forming, rod-shaped bacterium isolated from dog feces. The unknown bacterium was tentatively identified as a Eubacterium species, based on cellular morphological and biochemical tests. 16S rRNA gene sequencing studies, however, revealed that it was phylogenetically distant from Eubacterium limosum, the type species of the genus Eubacterium. Phylogenetically, the unknown species forms a hitherto unknown sub-line proximal to the base of a cluster of organisms (designated rRNA cluster XVI), which includes Clostridium innocuum, Streptococcus pleomorphus, and some Eubacterium species. Based on both phenotypic and phylogenetic criteria, it is proposed that the unknown bacterium be classified as a new genus and species, Allobaculum stercoricanis. Using a specific rRNA-targeted probe designed to identify Allobaculum stercoricanis, in situ hybridisation showed this novel species represents a significant organism in canine feces comprising between 0.1% and 3.7% of total cells stained with DAPI (21 dog fecal samples). The type strain of Allobaculum stercoricanis is DSM 13633(T)=CCUG 45212(T).     

Propionibacterium australiense sp. nov. Derived from Granulomatous Bovine Lesions

Granulomatous lesions from bovines were examined using standard histological methods from geographically separated herds in Queensland, Australia. Bacteria recovered from a number of these lesions were studied by the staff of Queensland Department of Primary Industries, Oonoonba Veterinary Laboratory, using standard microbiological methods. The bacteria appeared to be phenotypically similar to each other and like members of the genus Propionibacterium but could not be assigned to any currently named species. Actinomyces species, a cause of granulomatous lesions in cattle, were ruled out based on polyphasic testing and negative results for direct fluorescent antibody. Phenotypic studies indicated that strains were fermentative. Chemotaxonomic analyses revealed meso-diaminopimelic acids in the cell walls, a majority of the cellular fatty acids were of the branched-chain type and products of fermentation included major propionic acid. Comparative 16S rRNA gene sequencing demonstrated that the bacteria were genealogically highly related to each other and constituted a new subline within the genusPropionibacterium, displaying >3% divergence from other named species of that genus. The novel taxon could be distinguished from other validly described Propionibacterium species and so it is proposed that these strains represent a new species, Propionibacterium australiense sp. nov. Health Canada's National Microbiology Laboratory (NML) identifier numbers 98A072 (type strain) and 98A078 have been deposited as ATCC BAA-264^T, CCUG 46075^T, and ATCC BAA-263, CCUG 46174, respectively. Genbank accession number for the 16S rRNA gene sequence for 98A072 is AF225962.     

Taxonomy of the Clostridia: ribosomal ribonucleic acid homologies among the species.

rRNA homologies have been determined on reference strains representing 56 species of Clostridium. Competition experiments using tritium-labelled 23S rRNA were employed. The majority of the species had DNA with 27 to 28% guanine plus cytosine (%GC). These fell into rRNA homology groups I and II, which were well defined, and a third group which consisted of species which did not belong in groups I and II. Species whose DNA was 41 to 45% GC comprised a fourth group. Thirty species were placed into rRNA homology group I on the basis of having 50% or greater homology with Clostridium butyricum, C. perfringens, C. carnis, C. sporogenes, C. novyi or C. pasteurianum. Ten subgroups were delineated in homology group I. Species in each subgroup either had high homology with a particular reference species or a similar pattern of homologies to all of the reference organisms. The eleven species in rRNA homology group II had 69% or greater homology to C. lituseburense. Species in groups I and II had intergroup homologies of 20 to 40%. The six species in group II had very low homologies with groups I and II. Negligible homology also resulted when five of the species were tested against the sixth, C. ramosum. The five species having DNA with 41 to 45% GC were C. innocuum, C. sphenoides, C. indolis, C. barkeri and C. orotic um. Little rRNA homology was apparent between C. innocuum and the other high % GC species or with several Bacillus species having similar %GC DNA. Correlations between homology results and phenotypic characteristics are discussed.     

Design of species-specific primers to identify 13 species of Clostridium harbored in human intestinal tracts

The genus Clostridium is dominant in human intestinal tracts and plays an important role in human health. We designed species-specific primers to identify 13 species of Clostridium (C. perfringens, C. paraputrificum, C. bifermentans, C. difficile, C. clostridiiforme, C. nexile, C. sphenoides, C. indolis, C. ramosum, C. cocleatum, C. butyricum, C. sordellii, and C. innocuum) easily and rapidly. The PCR annealing temperature was set at a uniform 60 C for application to all strains at the same time. To confirm the specificities of these primers, 85 intestinal bacteria in total, including type strains, reference strains, and isolates were used. Ten primers (including those for C. perfringens to C. cocleatum) indicated high specificities. Although there were some cross-reactions with the other three primers, the target species were distinguishable from other bacteria by the different sizes of PCR products.     

On the Genus Ceterachopsis (J. Sm.) Ching

eterachopsis was proposed by the senior author as an independent genus of the family Aspleniaceae in 1940 with 2 species. Since then much study on its morphology, anatomy, gametophyte and palynology has been carried out by Nayar, Bir, Chandra & Nayar and Chang et al., and they are of the opinion that the genus like Ceterach, is a comparatively primitive element in the family Aspleniaceae. The queer zigzag patern of cutting of lanceolate fronds appears extraordinary in the family Aspleniaceae, and also suggests its antiquity in evolution. So far only 3 species (C. dalhousiae, C. paucivenosa and C. magnifica) are recognized, the former from W. Himalayas, also known from Africa, while the latter two from W. S. China (Yunnan). However, in the past forty years the Chinese botanists have discovered 2 more species as new in N. W. Yunnan, thus bringing the total known species of the genus up to 5. The present paper is a brief summary on the genus Ceterachopsis, which will be published in detail in the Flora Sinica vol. 4. Pteridologists are also divided in their views regarding the generic status of Ceterachopsis with 5 well-defined species in Yunnan and the East Himalayas. We prefer to mintain it as a genus separate from Asplenium on account of its distinct morphological features. It is to be hoped that more species may come to light in the mountainsin N. W. Yunnan through further exploration now under way.     

Jenseniin G, a heat-stable bacteriocin produced by Propionibacterium jensenii P126.

The genus Propionibacterium includes cutaneous species typically found on human skin and the dairy or classical species (Propionibacterium freudenreichii, P. jensenii, P. thoenii, and P. acidipropionici) used industrially for the production of Swiss cheese and propionic acid. Grinstead (1989, M.S. thesis, Iowa State University, Ames) has previously observed that some dairy propionibacteria inhibit other species in the classical grouping. We further investigated the inhibitor(s) produced by P. jensenii P126 (ATCC 4872). An antagonist(s) from anaerobic agar cultures of P126 strongly inhibited two closely related strains of propionibacteria, P. acidipropionici P5 and P. jensenii P54, and Lactobacillus bulgaricus NCDO 1489, Lactobacillus delbrueckii subsp. lactis ATCC 4797, Lactococcus cremoris NCDO 799, and Lactococcus lactis subsp. lactis C2. The inhibitor, designated jenseniin G, was active at pH 7.0; inactivated by treatment with pronase E, proteinase K, and type 14 protease; insensitive to catalase; and stable to freezing, cold storage (4 degrees C, 3 days), and heat (100 degrees C, 15 min). Classification of the inhibitor as a bacteriocin is supported by its proteinaceous nature and its bactericidal activity against L. delbrueckii subsp. lactis ATCC 4797. The lack of detectable plasmids suggests a chromosomal location for the determinant(s) of jenseniin G.     

中国果疣衣属地衣的研究

果疣衣属地衣系子囊菌门Ascomycota,子囊菌纲Ascomycetes,茶渍衣亚纲Lecanoromycetidae,鸡皮衣目Pertusariales,鸡皮衣科Pertusariaceae的成员。由于粉色果疣衣Varicellariarhodocarpa在中国的首次发现,使中国地衣区系中新增添了一个属:果疣衣属Varicellaria。该属迄今已知仅含三种,即粉芽果疣衣V.kemensis,八孢果疣衣V.carneonivea及粉色果疣衣V.rhodocarpa。果疣衣属为壳状地衣,地衣体微薄,膜质;子囊盘茶渍型,单个或数个聚生于瘤状果疣中;类侧丝多分枝并呈网状缠绕;子囊内含单孢或八孢;子囊孢子大型(长度为200~400mm),双胞,无色透明,椭圆形;孢子壁厚达27mm;与鸡皮衣属不同之处在于前者子囊内含双胞孢子,后者子囊内含单胞孢子。由于该属在中国是首次被发现,为了进一步的研究,文中还提供了该属迄今已知的全部三种的分种检索表。粉色果疣衣以其地衣体基本无粉芽和遇Pd呈负反应而区别于粉芽果疣衣,以子囊内含单孢而区别于八孢果疣衣。通过薄板层析法首次从该种髓部检测出茶渍衣酸。其地理成分为北极高山种,主要分布于欧洲的挪威、瑞典、芬兰、阿尔卑斯山脉,喀尔巴阡山脉、苏格兰以及北美洲;在亚洲迄今只见于日本与中国。     

Mechanism of intrinsic resistance to vancomycin in Clostridium innocuum NCIB 10674

We have studied the basis for intrinsic resistance to low levels of vancomycin in Clostridium innocuum NCIB 10674 (MIC = 8 microg/ml). Analysis by high-pressure liquid chromatography (HPLC) and mass spectrometry of peptidoglycan nucleotide precursors pools revealed the presence of two types of UDP-MurNac-pentapeptide precursors constitutively produced, an UDP-MurNAc-pentapeptide with a serine at the C terminus which represented 93% of the pool and an UDP-MurNAc-pentapeptide with an alanine at the C terminus which represented the rest of the pool. C. innocuum cell wall muropeptides containing pentapeptide[Ser], either dialanine substituted on the epsilon amino group of lysine or not, were identified and represented about 10% of the monomers while only 1% of pentapeptide[D-Ala] monomers were found. The sequence of a 2,465-bp chromosomal fragment from C. innocuum was determined and revealed the presence of ddl(c. innocuum) and C. innocuum racemase genes putatively encoding homologues of D-Ala:D-X ligases and amino acid racemases, respectively. Analysis of the pool of precursors of Enterococcus faecalis JH2-2, containing cloned ddl(c. innocuum) and C. innocuum racemase genes showed in addition to the UDP-MurNAc-pentapeptide[D-Ala], the presence of an UDP-MurNAc-pentapeptide[D-Ser] precursor. However, the expression of low-level resistance to vancomycin was observed only when both genes were cloned in E. faecalis JH2-2 together with the vanXYc gene from Enterococcus gallinarum BM4174 which encodes a d,d-peptidase which eliminates preferentially the high affinity vancomycin UDP-MurNAc-pentapeptide [D-Ala] precursors produced by the host. We conclude that resistance to vancomycin in C. innocuum NCIB 10674 was related to the presence of the two chromosomal ddl(c. innocuum) and C. innocuum racemase genes allowing the synthesis of a peptidoglycan precursor terminating in serine with low affinity for vancomycin.     

A Study on the Chinese Ormosia Jacks. (Cont.)

The first classification for the genus Ormosia was proposed by Bentham. It was followed by Taubert (1892) in Engler and Prantl’s Nat. Pflanzenf., who divided the genus into 2 sections. On the basis of the pod structure and seed characters Prain (1900) arranged the genus in 2 sections with 4 subsections. In the monograph on the genus Merrill and L. Chen ( 1943 ) limited their taxonomic study to Chinese and Indo-Chinese species, and recognized 34 species and 15 series. Recently Yakovlev (1971-1976) has treated the genus in 6 separate genera. In the present paper the author recognizes 35 species, of which 7 species and 2 varieties are new. The Chinese species of the genus are grouped into 3 sections and 6 series inmy classification.     

中国假尾孢属的研究II．

本文报道中国假尾孢属的24个种,其中有2个新种:杨桐假尾孢(Pseudocercospora adinandrae Guo&Liu),钟萼假尾孢(Pseudocercospora bretschneiderae Liu&Guo),10个新组合,1个新名称:木豆假尾孢(Pseudoeercospora cajani-flavi Guo&Liu)和11个中国新记录。文中对2个新种提供了拉丁文简介、描述及图。所研究的标本全部保存在中国科学院微生物研究所真菌标本室(HMAS)。     

Cultural characteristics and fatty acid composition of Corynebacterium acnes

A detailed study of the cultural characteristics and cellular fatty acid composition of 27 isolates of Corynebacterium acnes was performed to establish the properties by which this organism may be identified and characterized. The fatty acids were extracted directly from whole cells and examined as methyl esters by gas-liquid chromatography. Each strain possessed a similar fatty acid profile which was characterized by a large percentage of C15 branched-chain acid. Uniformity in certain biochemical reactions and cultural characteristics was also observed. All strains were catalase-positive, nonmotile, and urease-negative, reduced nitrate, liquefied gelatin, failed to hydrolyze esculin and starch, and gave a positive methyl red test. Glucose, fructose, and glycerol were fermented, but not lactose, salicin, sucrose, maltose, xylose, or arabinose. Production of hydrogen sulfide and indole, fermentation of mannitol, and hemolytic activity were variable characteristics. Two species of the genus Propionibacterium were also tested and found to be similar to C. acnes both in cultural characteristics and fatty acid composition. The results strengthen previous suggestions that C. acnes should be classified in the genus Propionibacterium.     

Phylogenic and phenotypic characterization of some Eubacterium-like isolates from human feces: description of Solobacterium moorei Gen. Nov., Sp. Nov

Three isolated strains from human feces were characterized by biochemical tests and 16S rDNA analysis. Phylogenetic analysis revealed that these isolated strains were members of the Clostridium subphylum of gram-positive bacteria. The phenotypic characters resembled those of the genus Eubacterium, but these strains were shown to be phylogenetically distant from the type species of the genus, Eubacterium limosum. The strains showed a specific phylogenetic association with Holdemania filiformis and Erysipelothrix rhusiopathiae. Based on a 16S rDNA sequence divergence of greater than 12% with H. filiformis and E. rhusiopathiae, a new genus, Solobacterium, is proposed for three strains, with one species, Solobacterium moorei. The type strain of Solobacterium moorei is JCM 10645T.     

Phylogenic and phenotypic evidence for the transfer of Eubacterium fossor to the genus Atopobium as Atopobium fossor comb. nov.

The 16S rRNA primary structure of Eubacterium fossor was determined by sequencing in vitro amplified rDNA. Sequence comparisons indicated that E. fossor has a specific phylogenetic association with the Atopobium species and is far from E. limosum, the type species of the genus Eubacterium. Phenotypic characters of E. fossor resemble those of the genus Atopobium. Therefore, we propose that E. fossor should be transferred to the genus Atopobium as Atopobium fossor comb. nov.     

A Revision of Aristolochia Linn. from E. & S. Asia

This revision deals with the system, evolution, distribution, cytotaxonomy and taxonomic treatment of the genus Aristolochia Linn. from E. & S. Asia, which covers Japan, USSR (Far East), China, Viet Nam, Laos, Cambodia, Thailand, Burma, India, Bhutan, Nepal, Sikkim, Bangladesh and Pakistan. Total 2 subgenera, 7 sections, 4 series, 68 species and 1 variety (cultivated species not included) are recognized in this treatment, of which 3 sections and 2 species are described as new. In addition, 13 new synonyms and some new records to this region are also included. Ystem Having estimated all the works dealing with the subdivision of the genus by the previous authors, the system of O. C. Schmidt (1935) is chosen as the basis, with a change of the sequence of the subdivisions. The subgenus Pararistolochia (Hutch. & Dalz.) O. C. Schmidt, which has indefinite stamens and gynandrous lobes, seems to be better considered as the most primitive one in the genus, while the subgenus Siphisia (Raf.) Duch., which has definite stamens and gynandrous lobes, anthers arranged in 3 pairs and more modifications of the perianth, seems to be the most advanced one. The perianth of the subgenus Siphisia has differentiated into several types, and it is more rational using this character to classify sections than lobes of the gynostemium. In this way, three new sections has been established. A suggested system of the genus is summarized as follows: Subgen. 1. Pararistolochia (Hutch. & Dalz.) O. C. Schmidt Subgen. 2. Aristolochia: Sect. 1. Aristolochia (2 series), Sect. 2. Gymnolobus Duch. Subgen. 3. Siphisia (Raf.) Duch.: Sect. 3. Pentodon Klotz, Sect. 4. Odontosiphisia J. S. Ma, Sect. 5. Leptosiphisia J. S. Ma, Sect. 6. Nepenthesia Klotz., Sect. 7. Obliquosiphisia J. S. Ma, Sect. 8. Siphisia (2 series). Evolution According to the character analysis of the genera of Aristolochiaceae, the evolutionary trends of the family are proposed as follows: 1, the perianth from double to single, from cup-like to tubular, 2, stamens from indefinite to definite, from separate from pistil to united into a gynostemium with pistil, which is a major evolutionary line in the family, 3, ovary from half-superior to inferior, and 4, fruit from a follicle to a capsule. It is evident that the genus Aristolochia, with a tubular perianth, stamens 6, a gynostemium, an inferior ovary and a capsule, is in highly advanced position in the family. The subgenus Pararistolochia, which has more stamens and more lobes of gynostemium, is very similar to the genus Thottea Rottb. and thus better considered as the most primitive subgenus in the genus. The subgenus Siphisia, which has definite stamens (6) in 3 pairs and 6 lobes of gynostemium as well as the polyploid feature (2n=4x=28), is the most advanced subgenus. As a result of the character analysis, the evolutionary trends of the subgenera in the genus, which are in accordance with those of the family, are proposed as follows: 1. stamens from indefinite to definite, and 2. gynostemium lobes from more to less. Distribution The more primitive subgenus Pararistolochia is only distributed in West Africa (except 1 species in Malesia), the subgenus Aristolochia in the tropical and subtropical regions, rarely in the temperate one, and the most advanced subgenus Siphisia occurs mainly in E. Asia, occasionally in N. America. The result of this work shows that the Hengduan Mountains is the second center of distribution after South America. The second center of distribution is of following features: 1. complex composition of taxa, among 3 subgenera and 8 sections, 2 subgenera and 7 sections have been recorded here, 2. rich in species, more than half of the total E. & S. Asian species, i.e. about 42 species have been found in this region, and 3. numerous endemics, more than 85 percent of the total number of species in the region, i.e. about 35 species, are endemic. Cytotaxonomy and taxonomic treatment The known chromosome numbers in 43 species, with 34 reported by Gregory (1956) and Fedorov (1969), together with 9 species newly reported in this work, show that Subgen. Aristolochia with 2n=2x=14, rarely 12, is apparently more primitive than Subgen. Siphisia with 2n=2x=28.     

Haramonas viridissp. nov. (Raphidophyceae, Heterokontophyta), a new sand-dwelling raphidophyte from cold temperate waters

A new, marine, sand‐dwelling raphidophyte from Sylt, Germany, Haramonas viridis Horiguchi et Hoppenrath sp. nov. is described. This represents a second species in the previously monotypic genus Haramonas, which was originally described from a sand sample from a mangrove river mouth in tropical Australia, based on the type species, H. dimorpha. This new species from a cold temperate region: (i) possesses a tubular invagi‐nation in the posterior part of the cell; (ii) produces copious amounts of mucilage in culture; (iii) possesses both motile and non‐motile stages in its life cycle; and (iv) has overlapping discoidal chloroplasts, all of which are diagnostic features of the genus Haramonas. Therefore, it is indisputable that this species belongs to this genus. However, the species from Sylt differs from the type species of the genus in: (i) having a larger cell size; (ii) possessing a larger number of chloroplasts; and (iii) being greenish in color. The ultrastructural study revealed that the structure of the tubular invagi‐nation was the same as that of the type species.     

Quantitative comparison of three C. parvum strains for immunotherapy of transplanted rat tumours

Summary Preparations of three commercially available killed bacterial suspensions designated Corynebacterium parvum have been compared for immunotherapy of transplanted rat tumours. The Wellcome CN6134 preparation was quantitatively superior to Institut Merieux IM1585 in suppressing local, subcutaneous, growth of tumour when injected in admixture with cells, for the control of thoracic malignant effusions when administered intrapleurally and for active specific immune stimulation where incorporated into vaccines of irradiated cells. The Wellcome CN5888 preparation was virtually ineffective. These observations, together with the recent re-classification of C. parvum into three distinct species of the genus Propionibacterium, i.e., P. acnes (Wellcome CN6134), P. granulosum (Wellcome CN5888), and P. avidum (Institut Merieux IMI1585) emphasize that the simple designation C. parvum is inadequate for the vaccines currently available for experimental or, more importantly, clinical immunotherapy.     

华西雨蛙寄生多盘虫科单殖吸虫一新种

在云南省新平县(24°N,101°32’E)采集的华西雨蛙Hyla a.annectans膀胱内检获多盘虫属1新种,新平多盘虫Polystoma xinpingensis sp.nov.。124只华西雨蛙中18只华西雨蛙感染,自然感染率为14.5%。新种与多盘虫属记录种最显著的区别在于:虫体体型小,其体长仅为2967μm。内侧肠管于虫体后1/3处仅形成2条横跨虫体的联合肠管,其它记录种肠管分支多数或形成较复杂的网状。睾丸巨大,呈滤泡状,分散分布直达虫体中部。新种的正、副模式标本保存在云南师范大学生命科学学院。     

Simple identification of anaerobic bacteria to genus level using typical antibiotic susceptibility patterns

Simple yet comprehensive identification of anaerobic bacilli is possible to genus level when typical susceptibility patterns of antimicrobial substances are used in combination with the morphological characteristics of the bacteria. Paper discs were soaked with fosfomycin (100 μg), colistin (10 μg), everninomicin B (10 μg) and metronidazole (2 μg) and tested on sheep blood agar in a jar under anaerobic conditions. A dichotomous scheme has been suggested for the differentiation of the following genera: Actinomyces, Bacteroides, Bifidobacterium, Clostridium, Eubacterium, Fusobacterium, Lactobacillus, Leptotrichia, Propionibacterium and Selenomonas. The method gave preliminary results which can be used as guidance for subsequent species identification and for therapeutic advice, as antibiotic susceptibility depends very much on the genus of anaerobic bacilli.