Cadmium-induced ammonium ion accumulation of rice seedlings at high temperature is mediated through abscisic acid

Significant increases in aboveground biomass production have been observed in mixed plantations of Eucalyptus globulus and Acacia mearnsii when compared to monocultures. However, this positive growth response may be enhanced or lost with changes in resource availability. Therefore this study examined the effect of the commonly limiting resources soil N, P and moisture on the growth of E. globulus and A. mearnsii mixtures in a pot trial. Pots containing two E. globulus plants, two A. mearnsii plants or one of each species were treated with high and low levels of N and P fertiliser. After 50 weeks, E. globulus plants grew more aboveground biomass in mixtures than monocultures. A. mearnsii were larger in mixtures only at low N, where both species were similar in size and the combined aboveground biomass of both species in mixture was greater than that of monocultures. At high N and both high and low levels of P fertiliser E. globulus appeared to dominate and suppress A. mearnsii. In these treatments, the faster growth of E. globulus in mixture did not compensate the reduced growth of A. mearnsii, so mixtures were less productive than (or not significantly different from) E. globulus monocultures. The greater competitiveness of E. globulus in these situations may have resulted from its higher N and P use efficiency and greater growth response to N and P fertilisers compared to A. mearnsii. This trial indicates that the complex interactions between species in mixtures, and thus the success of mixed plantations, can be strongly influenced by site factors such as the availability of N and P.     

Photosynthetic capacity of Eucalyptus globulus is higher when grown in mixture with Acacia mearnsii

Mixed species plantations of Eucalyptus and N₂-fixing species can be significantly more productive than monocultures. The aim of this study was to determine whether the improved growth resulted from increases in photosynthesis, light absorption and light-use efficiency, in addition to previously measured increases in leaf area, water-use efficiency and higher ratios of annual above-ground net primary production per unit of total annual below-ground carbon allocation in 1:1 mixtures near Cann River, Victoria, Australia. Light-saturated photosynthetic rate (A _max), electron transport (J), stomatal conductance (g _s) and foliar nitrogen concentrations were higher for Eucalyptus globulus trees growing in mixtures than those in monocultures. Similar increases in maximum rates of carboxylation (V _cmax), Rubisco, chlorophyll, and phosphorus concentrations were not significant. In contrast, A _max, V _cmax and J did not vary between mixtures and monocultures for A. mearnsii, whose growth was negligible by age 15 years. Mixtures also absorbed 24 and 41% more light than E. globulus and A. mearnsii., respectively, and were 38 and 154% more light-use efficient in the mixtures compared to monocultures. The increased nutrient availability in mixtures appeared to increase productivity of E. globulus by increasing the photosynthetic capacity of the foliage, as well as the leaf area, light absorption and light-use efficiency of the canopy.     

Nitrogen and phosphorus retranslocation and N:P ratios of litterfall in three tropical plantations: luxurious N and efficient P use by Acacia mangium

Some tropical N₂-fixing trees exhibit specific characteristics for phosphorus (P) acquisition and utilisation that contrast with the large nitrogen (N) fluxes in their litterfall. To investigate differences in N and P cycling in N₂-fixing plantations, litterfall and fresh leaf quality of a N₂-fixing Acacia mangium plantation were compared with that of a non-N₂-fixing Swietenia macrophylla plantation and a coniferous Araucaria cunninghamii plantation. The N concentration in the A. mangium litterfall was higher than that in the litterfall of the two other species, whereas the P concentration in the A. mangium leaf litterfall was 0.16 mg g^–1, which was only 12–22% of that of the other species. The P concentration in the reproductive parts of A. mangium was markedly higher (16.1 mg g^–1) than those in the other fractions. The N:P ratio was higher in the leaf fall (81) compared to the fresh leaves (29) of A. mangium, in contrast to the N:P ratios in the leaf samples of the other two species. An analysis of a global litterfall dataset of tropical plantations indicated that N:P ratios in litterfall were significantly higher in N₂-fixers than in non-N₂-fixers, and those of A. mangium were high among species in the N₂-fixer group. These results indicated that A. mangium efficiently retranslocated P in contrast to very large N cycling, under field conditions. These differences may be related to other physiological characteristics of A. mangium.     

Dominance of legume trees alters nutrient relations in mixed species forest restoration plantings within seven years

Failures in reforestation are often attributed to nutrient limitation for tree growth. We compared tree performance and nitrogen and phosphorus relations in adjacent mixed-species plantings of contrasting composition, established for forest restoration on Ultisol soil, originally covered by tropical semi-deciduous Atlantic Forest in Southeast Brazil. Nutrient relations of four tree species occurring in both planting mixtures were compared between a legume-dominated, species-poor direct seeding mixture of early-successional species (“legume mixture”), and a species-diverse, legume-poor mixture of all successional groups (“diverse mixture”). After 7 years, the legume mixture had 6-fold higher abundance of N₂-fixing trees, 177% higher total tree basal area, 22% lower litter C/N, six-fold higher in situ soil resin-nitrate, and 40% lower in situ soil resin-P, compared to the diverse mixture. In the legume mixture, non-N₂-fixing legume Schizolobium parahyba (Fabaceae-Caesalpinioideae) had significantly lower proportional N resorption, and both naturally regenerating non-legume trees had significantly higher leaf N concentrations, and higher proportional P resorption, than in the diverse mixture. This demonstrate forms of plastic adjustment in all three non-N₂-fixing species to diverged nutrient relations between mixtures. By contrast, leaf nutrient relations in N₂-fixing Enterolobium contortisiliquum (Fabaceae-Mimosoideae) did not respond to planting mixtures. Rapid N accumulation in the legume mixture caused excess soil nitrification over nitrate immobilization and tighter P recycling compared with the diverse mixture. The legume mixture succeeded in accelerating tree growth and canopy closure, but may imply periods of N losses and possibly P limitation. Incorporation of species with efficient nitrate uptake and P mobilization from resistant soil pools offers potential to optimize these tradeoffs.     

Selecting matched root architecture in tree pairs to be used for assessing N2 fixation based on soil-15N-labelling

It is commonly assumed that soil-¹⁵N-labelling provides reliable estimates of N₂ fixation in trees by matching N₂-fixing and non-N₂-fixing tree pairs. As root system is a key parameter in determining suitability of the tree pairs, we compared root architecture of Acacia cyanophylla Lindl. and Casuarina glauca Sieber ex. Spreng. (two N₂-fixing trees) with Eucalyptus camaldulensis Dehn. and Ceratonia siliqua L. (two non-N₂-fixing trees) at 4-year-old in Mediterranean-semiarid zone. The rhizobium strain used appeared more motile than Frankia strain. A. cyanophylla and E. camaldulensis had extensive rooting area and volume of fine roots, and both species tended to develop marked horizontal rooting, compared to C. glauca and C. siliqua. Characteristics of fine- and horizontal-root components can be used in selecting matched root systems of N₂-fixing and reference-paired trees. Root architecture of C. glauca was more similar to C. siliqua, than to E. camaldulensis, and that of A. cyanophylla was more similar to E. camaldulensis than to C. siliqua. Accordingly, E. camaldulensis is an appropriate reference to estimate actual N₂ fixation by A. cyanophylla, and C. siliqua is an appropriate reference for C. glauca, when using soil-¹⁵N-labelling method in the prevailing site environment.     

Belowground competitive suppression of seedling growth by grass in an African savanna

Coexistence of N₂-fixing legumes and non-legume trees with grasses in African savannas results in intense competition between these life-forms. We hypothesised that belowground competition might induce different nutritional constraints in N₂- versus non-N₂-fixing species. A field (Hluhluwe-imFolozi nature reserve, South Africa) competition experiment with two N₂-fixing legume species (Acacia burkei and Acacia karroo) and two non-N₂-fixing species (Schotia brachypetala and Spirostachys africana) both with clipped grass and without grass was established. Plants were supplied with no fertilizer, or generous amounts of fertilizer (200?kg?N?ha^?1, 100?kg P₂O₅ ha^?1, 7.1?kg K₂O ha^?1) supplied as either 28?C10 (N?CK), P or a combination of these fertilizers (NPK). Regularly clipped grass suppressed growth (by more than 90?%) of both N₂- and non-N₂-fixing seedlings equally. Biomass accumulation of seedlings grown with grass and the grasses themselves responded positively to NK and/or NPK, but not P, although P-fertilization did have effects on foliar [N] and ??¹⁵N values of trees and grasses showing that plants accessed the fertilizer. Tree ??¹⁵N values and foliar [N] were also modified by NPK, demonstrating access to fertilizer. However, the ameliorative effects of NPK on grass competition-induced biomass suppression were only partial. This may be due to ??non-resource competition?? (i.e. root gaps) imposed by dense grass roots. The fact that nutrients were able to partially ameliorate the effects of grass competition, however, indicates that such ??non-resource competition?? may be partially overcome by even more generous supply of fertilizers.     

The invasive Sorghum halepense harbors endophytic N2-fixing bacteria and alters soil biogeochemistry

Exotic plants invading new habitats frequently initiate broad changes in ecosystem functioning. Sorghum halepense is an invasive grass capable of growing in nitrogen (N)-poor tallgrass prairie soils that creates near monocultures in once phylogenetically diverse-communities. The biogeochemistry of soils invaded by S. halepense was compared to that of un-invaded native prairie soils. Invaded soils contained two to four times greater concentrations of alkaline metals, micronutrients, and essential plant nutrients than native prairie soils. The notable exception was Ca⁺², which was always significantly lower in invaded soils. The N-content of S. halepense above-ground biomass was 6.4 mg g^?1 (320 mg N plant^?1) and suggested a supplemental N source supporting plant growth. Altered soil biogeochemistry in invaded areas coupled with high above-ground biomass in N-poor soils suggested N₂-fixing activity associated with S. halepense. Nitrogenase activity of plant tissues indicated that N₂-fixation was occurring in, and largely restricted to, S. halepense rhizomes and roots. A culture approach was used to isolate these N₂-fixing bacteria from plant tissues, and 16S rRNA gene sequencing was used to identify these bacterial isolates. Nitrogenase activity of bacterial isolates indicated several were capable of N₂-fixation. In addition to N₂-fixation, other roles involved in promoting plant growth, namely mobilizing phosphorus and iron chelation, are known for closest matching relatives of the bacterial isolates identified in this work. Our results indicate that these plant growth-promoting bacteria may enhance the ability of S. halepense to invade and persist by altering fundamental ecosystem properties via significant changes in soil biogeochemistry.     

Responses of soil chemical and biological properties to nitrogen addition in a Dahurian larch plantation in Northeast China

Soil microbial properties play a key role in belowground ecosystem functioning, but are not well understood in forest ecosystems under nitrogen (N) enrichment. In this study, soil samples from 0–10 cm and 10–20 cm layers were collected from a Dahurian larch (Larix gmelinii Rupr.) plantation in Northeast China after six consecutive years of N addition to examine changes in soil pH, nutrient concentrations, and microbial biomass and activities. Nitrogen addition significantly decreased soil pH and total phosphorus, but had little effect on soil total organic carbon (TOC) and total N (TN) concentrations. The NO ₃ ^? -N concentrations in the two soil layers under N addition were significantly higher than that in the control, while NH ₄ ⁺ -N concentrations were not different. After six years of N addition, potential net N mineralization and nitrification rates were dramatically increased. Nitrogen addition decreased microbial biomass C (MBC) and N (MBN), and MBC/TOC and MBN/TN in the 0–10 cm soil layer, but MBC/MBN was increased by 67% in the 0–10 cm soil layer. Soil basal respiration, microbial metabolic quotient (qCO₂), and β-glucosidase, urease, acid phosphomonoesterase and nitrate reductase activities in the two soil layers showed little change after six years of N addition. However, soil protease and dehydrogenase activities in the 0–10 cm layer were 41% and 54% lower in the N addition treatment than in the control, respectively. Collectively, our results suggest that in the mid-term N addition leads to a decline in soil quality in larch plantations, and that different soil enzymes show differentiated responses to N addition.     

Natural 15N abundance of presumed N2-fixing and non-N2-fixing plants from selected ecosystems

Summary The ¹⁵N/¹⁴N ratios of plant and soil samples from Northern California ecosystems were determined by mass spectrometry. The ¹⁵N abundance of 176 plant foliar samples averaged 0.0008 atom % ¹⁵N excess relative to atmospheric N₂ and ranged from-0.0028 to 0.0064 atom % ¹⁵N excess relative to atmospheric N₂. Foliage from reported N₂-fixing species had significantly lower mean ¹⁵N abundance (relative to atmospheric N₂ and total soil N) and significantly higher N concentration (% N dry wt.) than did presumed non-N₂-fixing plants growing on the same sites. The mean difference between N₂-fixing species and other plants was 0.0007 atom % ¹⁵N. N₂-fixing species had lower ¹⁵N abundance than the other plants on most sites examined despite large differences between sites in vegetation, soil, and climate. The mean ¹⁵N abundance of N₂-fixing plants varied little between sites and was close to that of atmospheric N₂. The ¹⁵N abundance of presumed non-N₂-fixing species was highest at coastal sites and may reflect an input of marine spray N having relatively high ¹⁵N abundance. The ¹⁵N abundance of N₂-fixing species was not related to growth form but was for other plants. Annual herbaceous plants had highest ¹⁵N abundance followed in decreasing order by perennial herbs, shrubs, and trees. Several terrestrial ferns (Pteridaceae) had ¹⁵N abundances comparable to N₂-fixing legumes suggesting N₂-fixation by these ferns. On sites where the ¹⁵N abundance of soil N differs from that of the atmosphere, N₂-fixing plants can be identified by the natural ¹⁵N abundance of their foliage. This approach can be useful in detecting and perhaps measuring N₂-fixation on sites where direct recovery of nodules is not possible.     

The vertical distribution of N and K uptake in relation to root distribution and root uptake capacity in mature Quercus robur, Fagus sylvatica and Picea abies stands

We have measured the uptake capacity of nitrogen (N) and potassium (K) from different soil depths by injecting ¹⁵N and caesium (Cs; as an analogue to K) at 5 and 50 cm soil depth and analysing the recovery of these markers in foliage and buds. The study was performed in monocultures of 40-year-old pedunculate oak (Quercus robur), European beech (Fagus sylvatica) and Norway spruce (Picea abies (L.) Karst.) located at an experimental site in Palsgård, Denmark. The markers were injected as a solution through plastic tubes around 20 trees of each species at either 5 or 50 cm soil depth in June 2003. After 65 days foliage and buds were harvested and the concentrations of ¹⁵N and Cs analysed. The recovery of ¹⁵N in the foliage and buds tended to be higher from 5 than 50 cm soil depth in oak whereas they where similar in spruce and beech after compensation for differences in immobilization of ¹⁵N in the soil. In oak more Cs was recovered from 5 than from 50 cm soil depth whereas in beech and spruce no difference could be detected. Out of the three investigated tree species, oak was found to have the lowest capacity to take up Cs at 50 cm soil depth compared to 5 cm soil depth also after compensating for differences in discrimination against Cs by the roots. The uptake capacity from 50 cm soil depth compared with 5 cm was higher than expected from the root distribution except for K in oak, which can probably be explained by a considerable overlap of the uptake zones around the roots and mycorrhizal hyphae in the topsoil. The study also shows that fine roots at different soil depths with different physiological properties can influence the nutrient uptake of trees. Estimates of fine root distribution alone may thus not reflect the nutrient uptake capacity of trees with sufficient accuracy. Our study shows that deep-rooted trees such as oak may have lower nutrient uptake capacity at deeper soil layers than more shallow-rooted trees such as spruce, as we found no evidence that deep-rooted trees obtained proportionally more nutrients from deeper soil layers. This has implications for models of nutrient cycling in forest ecosystems that use the distribution of roots as the sole criterion for predicting uptake of nutrients from different soil depths.     

An assessment of soil enrichment by actinorhizal N2 fixation using δ15N values in a chronosequence of deglaciation at Glacier Bay,Alaska

The extent of transfer of fixed N between N₂-fixing and non-N₂-fixing plant species is largely unknown in successional studies. In order to redress this deficiency at a locale intensively studied ecologically, leaf tissue samples were collected from actinorhizal N₂-fixing (Alnus, Shepherdia, and Dryas) and two non-N₂-fixing (Salix) woody species within research plots located along a chronosequence of deglaciated fjord in Glacier Bay National Park, Alaska. The tissue samples were analyzed for ¹⁵N content, and the resulting data analyzed for trends in plant tissue N. Among the non-N₂-fixing Salix species, ¹⁵N values increased from the most recently deglaciated sites to converge with the temporally more-stable values for the symbiotic N₂-fixing species on sites at about 40 years after deglaciation. The lower ¹⁵N values of sequestered N in plant tissues suggested that N derived from N₂-fixing plants accounts for the major portion of N in associated plants up to 40 years after deglaciation. The ¹⁵N isotopic data also suggested that Shepherdia canadensis depends least on soil N, D. drummondii the most, and A. viridis ssp. sinuata somewhere between those two species. The presence of a sere dominated by dense thickets of A. viridis ssp. sinuata at the convergence of ¹⁵N values for the N₂-fixing and non-N₂-fixing species indicated that this species is most responsible for accumulation of fixed N in soil at Glacier Bay. This paper is dedicated to the memory of Steven J. Kohls who died prior to publication of this research.     

Australian mulga ecosystems –13C and 15N natural abundances of biota components and their ecophysiological significance

Samples of recently produced shoot material collected in winter/spring from common plant species of mulga vegetation in eastern and Western Australia were assayed for ¹³C and ¹⁵N natural abundance. ¹³C analyses showed only three of the 88 test species to exhibit C₄ metabolism and only one of seven succulent species to be in CAM mode. Non-succulent winter ephemeral C₃ species showed significantly lower mean δ¹³C values (– 28·0‰) than corresponding C₃-type herbaceous perennials, woody shrubs or trees (– 26·9, – 25·7 and – 26·2‰, respectively), suggesting lower water stress and poorer water use efficiency in carbon acquisition by the former than latter groups of taxa. Corresponding values for δ¹⁵N of the above growth and life forms lay within the range 7·5–15·5‰. δ¹⁵N of soil NH₄⁺ (mean 19·6‰) at a soft mulga site in Western Australia was considerably higher than that of NO₃^– (4·3‰). Shoot dry matter of Acacia spp. exhibited mean δ¹⁵N values (9·10 ± 0·6‰) identical to those of 37 companion non-N₂-fixing woody shrubs and trees (9·06 ± 0·5‰). These data, with no evidence of nodulation, suggested little or no input of fixed N₂ by the legumes in question. However, two acacias and two papilionoid legumes from a dune of wind-blown, heavily leached sand bordering a lake in mulga in Western Australia recorded δ¹⁵N values in the range 2·0–3·0‰ versus 6·4–10·7‰ for associated non-N₂-fixing taxa. These differences in δ¹⁵N, and prolific nodulation of the legumes, indicated symbiotic inputs of fixed N in this unusual situation. δ¹⁵N signals of lichens, termites, ants and grasshoppers from mulga of Western Australia provided evidence of N₂ fixation in certain termite colonies and by a cyanobacteria-containing species of lichen. Data are discussed in relation to earlier evidence of nitrophily and water availability constraints on nitrate utilization by mulga vegetation.     

Effects of local scouring and saturation of soil due to flooding on maximum resistive bending moment for overturning Robinia pseudoacacia

The effects on Robinia pseudoacacia (an exotic and invasive plant in Japanese rivers) of local scouring and saturation of the soil in the root-anchoring zone due to flooding were investigated. Scouring has been defined as the removal of substrate in the root-anchoring zone, exposing the tree roots. Tree-pulling experiments were conducted, simulating flood action, and the resulting damage was examined in order to assess the effect of local scouring on the maximum resistive bending moment (M _max) for overturning. Scouring was artificially created to three different depths, 0, 25, and 50 cm. A nonlinear model was developed that included soil strength characteristics to calculate the critical overturning moment (M _cri) under dry and saturated soil conditions. Significant correlations (p < 0.05) of M _max with different tree and root–soil plate characteristics, such as diameter at breast height (D _bh), tree weight, root depth, and root–soil plate radius, were developed in order to elucidate the effects of scouring on M _max. M _max was slightly reduced with scouring depth for trees with D _bh <10 cm (small) trunks, and it was significantly and negatively (p < 0.05) correlated with scouring depth for trees with 10 < D _bh < 20 cm (medium) trunks. However, M _max did not change significantly with scouring depth for trees with a D _bh >20 cm (big) trunks. The nonlinear model was useful for determining the M _cri of R. pseudoacacia under dry and saturated soil conditions. The overturning moments of all (small, medium, and big) trees were considerably reduced under the saturated soil condition. It could be concluded that medium-sized trees were greatly affected by scouring, and that small and big trees were mainly affected by saturation of the soil under severe flooding conditions.     

The impact of soil organism composition and activated carbon on grass-legume competition

Belowground mechanisms involved in plant competition are still poorly understood. Since plant species are differently affected by soil organisms, changes in soil community composition might affect interspecific competition with consequences for plant community structure. We studied whether soil community composition affects competition between the grass Holcus lanatus L. and the legume Lotus corniculatus L. We established three different soil communities by adding no soil organisms (control), microorganisms <30 μm, and a soil suspension including microorganisms >30 μm, AMF and nematodes to gamma-sterilized soil. Nodulation and aboveground biomass of Lotus was decreased in the sterilized control soil and in the presence of Holcus. Contrastingly, the grass grew better in the presence of the legume than in monoculture and was not affected by soil community composition. Legume monocultures tended to produce the greatest aboveground biomass of the plant combinations when soil microorganisms were present, while the root biomass in legume monocultures was the lowest. Then, in a second experiment, we used natural (not sterilized) soil and added activated carbon to test whether the reduced nodulation of Lotus in interspecific competition is caused by allelopathic compounds of Holcus. In the natural soil, nodulation and flowering of Lotus was reduced, but the aboveground biomass was not affected by the competition with Holcus. Contrary to our expectations, activated carbon had a strong negative effect on the nodulation, growth and flowering of Lotus and shifted the interspecific competition in favour of Holcus. Probably, activated carbon impeded the nodulation by disrupting the communication between the legume and N₂-fixing bacteria. We suggest that interruption of plant-microbe communications by activated carbon might be widespread and will confound interpretations on the role of allelopathy. Generally, we observed that the symbiosis of the legume with N₂-fixing bacteria plays a crucial role in the grass-legume competition. When the symbiosis was deterred, the legume was outcompeted by the grass.     

Sap flow of the southern conifer, <Emphasis Type="Italic">Agathis australis</Emphasis> during wet and dry summers

Key message

Analysis of sap flux density during drought suggests that the large sapwood and rooting volumes of larger trees provide a buffer against drying soil.

Abstract

The southern conifer Agathis australis is amongst the largest and longest-lived trees in the world. We measured sap flux densities (F _d) in kauri trees with a DBH range of 20–176 cm to explore differences in responses of trees of different sizes to seasonal conditions and summer drought. F _d was consistently higher in larger trees than smaller trees. Peak F _d was 20 and 8 g m^?2 s^?1 for trees of diameters of 176 and 20 cm, respectively, during the wet summer. Multiple regression analysis revealed photosynthetically active radiation (PAR) and vapour pressure deficit (D) were the main drivers of F _d. During drought, larger trees were more responsive to D whilst smaller trees were more responsive to soil drying. Our largest tree had a sapwood area of 3,600 cm². Preliminary analysis suggests stem water storage provides a buffer against drying soil in larger trees. Furthermore, F _d of smaller trees had higher R ² values for soil moisture at 30 and 60 cm depth than soil moisture at 10 cm depth (R ² = 0.68–0.97 and 0.55–0.67, respectively) suggesting that deeper soil moisture is more important for these trees. Larger trees did not show a relationship between F _d and soil moisture, suggesting they were accessing soil water deeper than 60 cm. These results suggest that larger trees may be better prepared for increasing frequency and intensity of summer droughts due to deeper roots and/or larger stem water storage capacity.

     

Land cover change effects on soil chemical and biological properties after planting Mongolian pine (Pinus sylvestris var. mongolica) in sandy lands in Keerqin, northeastern China

We compared soil moisture content, pH, total organic carbon (C _org), total nitrogen (TN), total phosphorus (TP) and inorganic N (NH₄ ⁺–N, NO₃ ^?–N) concentrations, soil potential C and N mineralization rates, soil microbial biomass C (C _mic), soil metabolic quotient (qCO₂), soil microbial quotient (C _mic/C _org) and soil enzyme (urease and invertase) activities in semiarid sandy soils under three types of land cover: grassland, Mongolian pine (Pinus sylvestris var. mongolica) plantation, and elm (Ulmus punila)–grass savanna in southeastern Keerqin, in northeast China. Soil C _org, TN and TP concentrations (0–10, 10–20, 20–40 and 40–60 cm) were lower while soil C/N and C/P ratios were higher in the plantation than in grassland and savanna. The effects of land cover change on NH₄ ⁺–N and NO₃ ^?–N concentrations, soil potential nitrification and C mineralization rates in the surface soil (0–10 cm) were dependent on sampling season; but soil potential N mineralization rates were not affected by land cover type and sampling season. The effects of land cover change on C _mic and qCO₂ of surface soil were not significant; but C _mic/C _org were significantly affected by land cover change and sampling season. We also found that land cover change, sampling season and land cover type?×?sampling season interaction significantly influenced soil enzyme (urease and invertase) activities. Usually soil enzyme activities were lower in the pine plantations than in grassland and savanna. Our results suggest that land cover change markedly influenced soil chemical and biological properties in sandy soils in the semiarid region, and these effects vary with sampling season.     

Comparative Genomic Analysis of N2-Fixing and Non-N2-Fixing Paenibacillus spp.: Organization,Evolution and Expression of the Nitrogen Fixation Genes

We provide here a comparative genome analysis of 31 strains within the genus Paenibacillus including 11 new genomic sequences of N₂-fixing strains. The heterogeneity of the 31 genomes (15 N₂-fixing and 16 non-N₂-fixing Paenibacillus strains) was reflected in the large size of the shell genome, which makes up approximately 65.2% of the genes in pan genome. Large numbers of transposable elements might be related to the heterogeneity. We discovered that a minimal and compact nif cluster comprising nine genes nifB, nifH, nifD, nifK, nifE, nifN, nifX, hesA and nifV encoding Mo-nitrogenase is conserved in the 15 N₂-fixing strains. The nif cluster is under control of a σ⁷⁰-depedent promoter and possesses a GlnR/TnrA-binding site in the promoter. Suf system encoding [Fe–S] cluster is highly conserved in N₂-fixing and non-N₂-fixing strains. Furthermore, we demonstrate that the nif cluster enabled Escherichia coli JM109 to fix nitrogen. Phylogeny of the concatenated NifHDK sequences indicates that Paenibacillus and Frankia are sister groups. Phylogeny of the concatenated 275 single-copy core genes suggests that the ancestral Paenibacillus did not fix nitrogen. The N₂-fixing Paenibacillus strains were generated by acquiring the nif cluster via horizontal gene transfer (HGT) from a source related to Frankia. During the history of evolution, the nif cluster was lost, producing some non-N₂-fixing strains, and vnf encoding V-nitrogenase or anf encoding Fe-nitrogenase was acquired, causing further diversification of some strains. In addition, some N₂-fixing strains have additional nif and nif-like genes which may result from gene duplications. The evolution of nitrogen fixation in Paenibacillus involves a mix of gain, loss, HGT and duplication of nif/anf/vnf genes. This study not only reveals the organization and distribution of nitrogen fixation genes in Paenibacillus, but also provides insight into the complex evolutionary history of nitrogen fixation.     

Relation of fine root distribution to soil C in a Cunninghamia lanceolata plantation in subtropical China

Background and aims

Growth and distribution of fine roots closely depend on soil resource availability and affect soil C distribution in return. Understanding of relationships between fine root distribution and soil C can help to predict the contribution of fine root turnover to soil C accumulation.

Methods

A study was conducted in a subtropical Cunninghamia lanceolata plantation to assess the fine root mass density (FRMD), fine root C density (FRCD) of different fine root groups as well as their relations with soil C.

Results

The FRMD and FRCD of short-lived roots, dead roots and herb roots peaked in the 0–10 cm soil layer and decreased with soil depth, while FRMD, FRCD of long-lived roots peaked in the 10–20 cm soil layer. Soil C was positively related to FRMD and FRCD of total fine roots (across all three soil layers), dead roots (0–10 cm) and herb roots (10–20 cm) as well as FRCD of short-lived roots (20–40 cm) (P <0.05).

Conclusions

Soil C was mainly affected by herb roots in upper soil layers and by woody plant roots in deeper soil layers.     

Changes from pasture to a native tree plantation affect soil organic matter in a tropical soil,Panamá

Background and aims

We examined changes in soil organic matter arising from conversion of a 45-year old pasture to a 10 yr. old native tree plantation in Panamá, to evaluate the effect of monoculture and mixtures.

Methods

We intensively sampled the soil 0–10 cm depth in the pasture in 2001 and in 22 plantation plots in 2011, ranging from 5 monocultures to 3- and 6-species treatments; samples were also taken from an undisturbed forest site. Soil analyses included organic carbon (SOC) and δ¹³C.

Results

Conversion of the pasture to tree plantation resulted in an overall loss of SOC of 0.6 kg m^?2 (18%) in the top 10 cm, but neither tree species nor diversity had a significant effect. End-member δ¹³C values suggested that the contribution of C₃ plants to SOC was increased from 26% in the pasture to 55% after 10 years of plantation and SOC turnover times were calculated to be 21–36 yr.

Conclusions

The magnitude of the loss in soil SOC is smaller than the increases in tree biomass (~3 kg C m^?2) and litter (~0.3 kg C m^?2) in the plantation, but still a significant part of the ecosystem C balance.

     

N2-fixation by methanotrophs sustains carbon and nitrogen accumulation in pristine peatlands

Symbiotic relationships between N₂-fixing prokaryotes and their autotrophic hosts are essential in nitrogen (N)-limited ecosystems, yet the importance of this association in pristine boreal peatlands, which store 25 % of the world’s soil (C), has been overlooked. External inputs of N to bogs are predominantly atmospheric, and given that regions of boreal Canada anchor some of the lowest rates found globally (~1 kg N ha^?1 year^?1), biomass production is thought to be limited primarily by N. Despite historically low N deposition, we show that boreal bogs have accumulated approximately 12–25 times more N than can be explained by atmospheric inputs. Here we demonstrate high rates of biological N₂-fixation in prokaryotes associated with Sphagnum mosses that can fully account for the missing input of N needed to sustain high rates of C sequestration. Additionally, N amendment experiments in the field did not increase Sphagnum production, indicating that mosses are not limited by N. Lastly, by examining the composition and abundance of N₂-fixing prokaryotes by quantifying gene expression of 16S rRNA and nitrogenase-encoding nifH, we show that rates of N₂-fixation are driven by the substantial contribution from methanotrophs, and not from cyanobacteria. We conclude biological N₂-fixation drives high sequestration of C in pristine peatlands, and may play an important role in moderating fluxes of methane, one of the most important greenhouse gases produced in peatlands. Understanding the mechanistic controls on biological N₂-fixation is crucial for assessing the fate of peatland carbon stocks under scenarios of climate change and enhanced anthropogenic N deposition.