Evidence for genetic differences in the offspring of two sympatric morphs of Arctic charr

The sub-arctic Lake Fjellfrøsvatn, northern Norway, has two morphs of Arctic charr that are reproductively isolated because they spawn 5 months apart. The smaller morph (≤14 cm L_F ) is confined to the profundal zone of the lake and the larger morph is mainly littoral. Three hypotheses were tested: (i) the offspring of the profundal Arctic charr grow slower than the offspring of the littoral Arctic charr under identical conditions, thus indicating a genetic basis for the slow growth of the profundal Arctic charr in the wild; (ii) the wild phenotypes of the two morphs are morphometrically different and the differences are persistent in the offspring; (iii) the offspring of the two morphs have different behaviour traits under similar treatments. The first hypothesis was rejected; offspring of the profundal morph grew slightly better than offspring of the littoral morph at 10° C in the laboratory. The second and third hypotheses were supported by the data. Wild-caught fish of the two morphs differed in several morphometric characters and most of the differences persisted in the offspring. In the laboratory, offspring of the littoral morph were more active, more aggressive and more pelagic than offspring of the profundal morph and naive offspring of the profundal morph were more effective in eating live chironomid larvae than were offspring of the littoral morph. The data for morphometry and behaviour, but not growth, provide evidence for genetic differences between the two Arctic charr morphs of Fjellfrøsvatn.     

Effects of population,family, and diet on craniofacial morphology of Icelandic Arctic charr (Salvelinus alpinus)

We evaluated hypotheses of intralacustrine diversification and plastic responses to two diet environments in Icelandic Arctic charr (Salvelinus alpinus). Full‐sib families of progeny of wild polymorphic charr from two lakes where morphs vary in their degree of phenotypic and ecological divergence were split, with half of the offspring reared on a benthic and half on a limnetic type of diet to estimate family norms of reaction. We focused on variation in craniofacial traits because they are probably functionally related to diet and complement a previous study of body shape in these charr. A hierarchical analysis of phenotypic variation between lakes, pairs of morphs within each lake, and two families within each morph found that phenotypic variation partitioned between families relative to morphs was reduced in the more ecologically diversified population, which is consistent with adaptive diversification. The effect size of plastic responses between lake populations was similar, suggesting little difference in the degree of canalization in contrast to a previous analysis of body form plasticity. Thus, the role that plastic morphological responses play in the adaptive diversification of morphs and different lake populations of Arctic charr may depend on the trait. © 2013 The Linnean Society of London     

Inherited differences in head allometry in polymorphic Arctic charr from Loch Rannoch, Scotland

Planktivorous and benthivorous morphs of wild Arctic charr Salelinus alpinus from Loch Rannoch, Perthshire, Scotland, reared in the laboratory from artificially fertilized eggs under identical conditions, were morphologically distinct (based on a series of head measurements) from an early age. For some morphometric characters, these differences became more marked with increasing body size, reflecting differences in the allometric growth patterns of the two forms. These data show that the observed phenotypic differences between these two trophic variants were, to some extent at least, inherited. Thus it is concluded that the mechanisms regulating expression of phenotype in the sympatric morphs of Loch Rannoch are significantly different from the environmentally determined body size polymorphisms reported from Norway but are closer to the more completely divergent forms from Thingvalavatn, Iceland.     

Extant and extinct forms of arctic charr Salvelinus alpinus (L.) complex from the Leprindo lake system (Transbaikalia): Differentiation in life history, morphology, and genetics

Interconnected lakes Bol’shoe Leprindo and Maloe Leprindo in Transbaikalia hosted large (extinct) and dwarf charr forms. Rarely “small” individuals intermediate in size between these forms are caught. In order to assess morphological, ecological, and genetic differentiation of sympatric charr forms and parapatric charr populations we studied their meristic and morphometric characters, feeding, breeding, and growth; we also investigated variation at 8 microsatellite loci using DNA isolated both from contemporary and historic samples. Profound differences were found between large and dwarf charr in growth rate, feeding (piscivores and highly specialized zooplanktivores, respectively), spawning time, and morphology. Dwarf charr from the two lakes demonstrate minor differences in morphology and growth rate. “Small” individuals are morphologically similar with dwarf charr and spawn together with them, they are recruited from dwarf form in late ontogeny as the result of transition to piscivorous feeding and growth acceleration. Microsatellite analysis showed that: (1) large and dwarf charr forms display high degree of genetic differentiation and reproductive isolation; (2) dwarf charr from interconnected lakes belong to different isolted populations; (3) “small charr” are genetically identical with dwarfs. The degree of ecomorphological and genetic differentiation between large and dwarf forms places charr from Leprindo Lakes among the most strongly differentiated Arctic charr forms’ flocks known at the vast range of S. alpinus complex.     

Three sympatric forms of Arctic charr Salvelinus alpinus complex (Salmoniformes,Salmonidae) from Lake Kamkanda,Northern Transbaikalia

We studied morphology, size and age structure, growth, feeding, and variation at microsatellite loci of three forms of Arctic charr Salvelinus alpinus complex (dwarf, small, large) from mountain Lake Kamkanda in River Olekma basin, northern Transbaikalia. The forms differ in meristic and morphometric characters, external appearance and size. The small form distinctly differs from the dwarf and large forms in higher number and length of gill rakers. The forms differ in growth rate; however, differences in growth between the dwarf and the small forms are not as large as between sympatric dwarf and small charr from other Transbaikalian lakes. The large form is heterogeneous in growth rate. The small form matures one year earlier than the dwarf form and has a shorter life span. The dwarf form is a benthophage, the small form is a planktophage, and the large form is a predator. The dwarf form spawns in September, while the small form spawns in November-December, and there is no overlap in their spawning time. The three forms have clear genetic differences, which support their reproductive isolation. It is assumed that the three forms of Arctic charr originated within Lake Kamkanda on the basis of trophic polymorphism and spawning time displacement and attained a high degree of morphological and genetic divergence.     

Extensive genetic differentiation between recently evolved sympatric Arctic charr morphs

The availability of diverse ecological niches can promote adaptation of trophic specializations and related traits, as has been repeatedly observed in evolutionary radiations of freshwater fish. The role of genetics, environment, and history in ecologically driven divergence and adaptation, can be studied on adaptive radiations or populations showing ecological polymorphism. Salmonids, especially the Salvelinus genus, are renowned for both phenotypic diversity and polymorphism. Arctic charr (Salvelinus alpinus) invaded Icelandic streams during the glacial retreat (about 10,000 years ago) and exhibits many instances of sympatric polymorphism. Particularly, well studied are the four morphs in Lake Þingvallavatn in Iceland. The small benthic (SB), large benthic (LB), planktivorous (PL), and piscivorous (PI) charr differ in many regards, including size, form, and life history traits. To investigate relatedness and genomic differentiation between morphs, we identified variable sites from RNA‐sequencing data from three of those morphs and verified 22 variants in population samples. The data reveal genetic differences between the morphs, with the two benthic morphs being more similar and the PL‐charr more genetically different. The markers with high differentiation map to all linkage groups, suggesting ancient and pervasive genetic separation of these three morphs. Furthermore, GO analyses suggest differences in collagen metabolism, odontogenesis, and sensory systems between PL‐charr and the benthic morphs. Genotyping in population samples from all four morphs confirms the genetic separation and indicates that the PI‐charr are less genetically distinct than the other three morphs. The genetic separation of the other three morphs indicates certain degree of reproductive isolation. The extent of gene flow between the morphs and the nature of reproductive barriers between them remain to be elucidated.     

Molecular genetic examination of the polymorphic Arctic charr Salvelinus alpinus of Thingvallavatn, Iceland

Thingvallavatn, Iceland contains two sympatric morphotypes (benthic and limnetic) of Arctic charr Salvelinus alpinus. Each morphotype is composed of two morphs and these differ markedly in ecology, behaviour and life history. We used molecular genetic approaches to test whether (i) genetic heterogeneity exists among morphs and (ii) if morphs arose in allopatry and came into secondary contact or arose sympatrically within the lake through genetic segregation and/or phenotypic plasticity. Direct sequencing of 275 bp of the mitochondrial DNA (mtDNA) control region, mtDNA restriction fragment length polymorphisms and single locus minisatellite analyses detected insufficient variation to test our hypotheses. Analysis of multilocus minisatellite band sharing detected no significant differences between morphs within the same morphotype. However, significant differences among morphs belonging to different morphotypes suggest some genetic heterogeneity in Thingvallavatn charr. Limnetic charr from Thingvallavatn were more similar to sympatric benthic charr than to allopatric limnetics from two other Icelandic lakes. This suggests that the Thingvallavatn morphs arose sympatrically within the lake rather than in allopatry followed by secondary contact.     

Genetic basis of life-history variation of dwarf and normal Arctic charr,Salvelinus alpinus (L.), in Stora Rösjön,central Sweden*

The genetic basis of life-history variation of dwarf and normal Arctic charr forms in Stora Rosjon was studied by means of two separate rearing experiments on the progeny of artificially bred wild fish. The concept of differential life-strategies gained support, since the progeny of the normal charr form had a higher growth rate and became sexually mature at a larger size and later age than the progeny of the dwarf charr form. The hybrid progeny (dwarf × normal parental charr) was recognized as intermediate in growth as well as in size and age at maturity, compared to the normal and dwarf progeny. However, a dominance effect of the growth and maturation pattern of the dwarf charr was revealed, since hybrid progeny were more similar to dwarf than to normal progeny. The rearing experiments also support the view that the dwarf and normal charr forms are inherited characteristics of one population, since any individual progeny cannot be assigned to a certain form according to its size and age at maturity.     

Stable isotope analysis reveals ecological segregation in a bimodal size polymorphism in Arctic charr from Loch Tay, Scotland

The serendipitous discovery of a body-size dimorphism amongst the sexually mature Arctic charr Salvelinus alpinus of Loch Tay is described. Sexually mature Arctic charr, collected by gill netting on spawning areas, showed a clear and distinct bimodal size distribution with no overlap in fork length distributions. The upper (19–29 cm L _F) and lower modes (8–16 cm) were not solely the result of sex or age differences. Analysis of stable isotope ratios of C and N in muscle showed highly significant differences in mean δ¹³C and δ¹⁵N between populations, demonstrating a difference in trophic ecology between the two body-size morphs. Overlap in the range of δ¹³C and δ¹⁵N values for the two morphs, however, suggested that they occasionally shared a common diet. Data from other studies strongly indicated that the proximate and ultimate mechanisms that control body-size dimorphisms in Arctic charr differed between sites. Clear differences in trophic ecology in the Loch Tay Arctic charr suggested that the available feeding opportunity may differ for the two morphs. The most likely proximate mechanism resulting in this dimorphism is growth rate differences resulting from differences in food availability for the two subgroups occupying alternative foraging niches in Loch Tay.     

Contrasting life history strategies of sympatric Arctic charr morphs, Salvelinus alpinus

In polymorphic populations morphs usually diverge in morphology, ecology and life history, which is most likely driven by adaptations to different environments or resources. Sympatric morphs may develop differences in several life history traits to be able to maximize fitness in alternative niches and habitats. Here, the contrasting life history traits of three sympatric Arctic charr (Salvelinus alpinus (L.)) morphs in a deep and oligotrophic lake in sub-arctic Norway are addressed. The charr morphs differ in spawning habitat and trophic niche. One is a littoral spawning morph that feeds on benthic invertebrates and zooplankton in the littoral and pelagic zones (referred to as the LO-morph), and two other are profundal spawning morphs that either utilize profundal soft bottom benthos as food resource (the PB-morph) or are piscivorous (the PP-morph). The LO-morph typically had intermediate life-history traits relative to the two profundal morphs that had highly contrasting life history traits, especially in growth and age and size of maturity. The PB-morph matured at a young age (～3 years) and at a small body size (～8.5 cm), thereby increasing their fitness by investing in reproduction early in life, which results in a short generation time and decreased probability of being predated before first reproduction. The PP-morph on the other hand, matured at an old age (～9.2 years) and a large body size (～26 cm), thereby increasing their fitness by investing in somatic growth to enhance initial fecundity, and also to reach a large body size profitable for piscivory. The different trade-off regime between the PP- and PB-morphs seems to be caused by adaptation to alternative trophic niches, and appears to be an important factor for the co-occurrence of the two sister-morphs in the profundal zone.     

Characterisation and expression of the paired box protein 7 (Pax7) gene in polymorphic Arctic charr (Salvelinus alpinus)

Arctic charr (Salvelinus alpinus L.) from Lake Thingvallavatn, Iceland occur as four distinct morphs: large benthivorous (LB), dwarf benthivorous (DB), piscivorous (PI) and planktonivorous (PL). The morphs differ with respect to body size, head morphology, growth rate, and life history. The aim of this study was to investigate the paired box protein 7 (Pax7) gene as a candidate for such polymorphisms due to its importance in cranio-facial, skeletal muscle, and central nervous system development. No variation in coding and intronic sequences was found between morphs. We identified 10 alternate Pax7 isoforms with insertions/deletions: a four-residue (GNRT) deletion, a GEASS insertion truncated by the first serine residue (GEAS), and a thirteen-residue insertion (GQYA/TGPEYVYCGT). The latter insertion with a threonine (T) contains a putative casein kinase II (CK-2) phosphorylation site. Pax7 spatial expression patterns were identical in embryos of DB-, LB-, and PL-morphs, and were similar to those described for zebrafish Pax7c, but a difference in temporal expression for segmentation was observed between DB and LB morphs. At the end of segmentation, novel expression was observed in the mandibular region as two bilateral domains. The potential role of multiple alternative splicing of the Pax7 gene for the generation of different Arctic charr morphs is briefly discussed.     

Convergent evolutionary processes driven by foraging opportunity in two sympatric morph pairs of Arctic charr with contrasting post‐glacial origins

The expression of two or more discrete phenotypes amongst individuals within a species (morphs) provides multiple modes upon which selection can act semi‐independently, and thus may be an important stage in speciation. In the present study, we compared two sympatric morph systems aiming to address hypotheses related to their evolutionary origin. Arctic charr in sympatry in Loch Tay, Scotland, exhibit one of two discrete, alternative body size phenotypes at maturity (large or small body size). Arctic charr in Loch Awe segregate into two temporally segregated spawning groups (breeding in either spring or autumn). Mitochondrial DNA restriction fragment length polymorphism analysis showed that the morph pairs in both lakes comprise separate gene pools, although segregation of the Loch Awe morphs is more subtle than that of Loch Tay. We conclude that the Loch Awe morphs diverged in situ (within the lake), whereas Loch Tay morphs most likely arose through multiple invasions by different ancestral groups that segregated before post‐glacial invasion (i.e. in allopatry). Both morph pairs showed clear trophic segregation between planktonic and benthic resources (measured by stable isotope analysis) but this was significantly less distinct in Loch Tay than in Loch Awe. By contrast, both inter‐morph morphological and life‐history differences were more subtle in Loch Awe than in Loch Tay. The strong ecological but relatively weak morphological and life‐history divergence of the in situ derived morphs compared to morphs with allopatric origins indicates a strong link between early ecological and subsequent genetic divergence of sympatric origin emerging species pairs. The emergence of parallel specialisms despite distinct genetic origins of these morph pairs suggests that the effect of available foraging opportunities may be at least as important as genetic origin in structuring sympatric divergence in post‐glacial fishes with high levels of phenotypic plasticity. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, ?? , ??–??.     

The size structure of lacustrine Arctic charr (Pisces: Salmonidae) populations

The size structure of Arctic charr (Salvelinus alpinus) populations was analysed using published information; 44% of populations were bimodal, with both large (normal) and small (dwarf) morphs occurring within a cohort. The remaining populations were unimodal, consisting of normal-sized or of stunted adults. Bimodal populations increased in frequency with latitude and were characteristic of large, deep lakes with few fish species. The age and size at which bimodality developed, the size difference between the morphs, and the frequency of cannibalism in charr populations increased with latitude. A variety of genotypic and phenotypic explanations are examined. The evidence for specific differences between the morphs is unconvincing. Various competition and predation hypotheses fail to explain the occurrence of bimodality. Cannibalism does not cause bimodality despite being strongly associated with it since bimodality develops before charr become cannibalistic. Much of the variation in charr size structure is suggested to be a consequence of increased seasonality in food supply in more northerly environments, coupled with feeding size thresholds. The latter result in larger members of a cohort being able to maintain growth rates on seasonally abundant prey while smaller individuals which cannot catch these items form a second mode of more slowly growing fish. Bimodality is documented in a number of other, predominantly northern, fish species.     

Heterochrony in skeletal development and body size in progeny of two morphs of Arctic charr from Thingvallavatn, Iceland

Planktivorus Arctic charr had larger eggs than small benthivorous charr and the progeny of the former were longer (total length) at days 125, 145 and 159 after fertilization. Size differences remained significant after the removal of egg size effect on embryo size. Size of hybrid progeny tended to be similar to their maternal pure progeny group, suggesting maternal effects not directly related to yolk volume. In general, fin ray number increased faster in small benthivorous charr progeny than in planktivorous charr progeny, hybrid progeny tending to have intermediate fin ray numbers. The results indicate that morph differences in embryonic growth and skeletal development have a genetic and maternal component. Results support the hypothesis that in the period from hatching until just after first external feeding small benthivorous charr allocate more energy towards bone development, e.g. formation of fin rays, while planktivorous charr allocate more energy to body growth. The different developmental trajectories may reflect adaptations to discrete differences in habitats between the morphs.     

Morphological divergence between three Arctic charr morphs – the significance of the deep‐water environment

Morphological divergence was evident among three sympatric morphs of Arctic charr (Salvelinus alpinus (L.)) that are ecologically diverged along the shallow‐, deep‐water resource axis in a subarctic postglacial lake (Norway). The two deep‐water (profundal) spawning morphs, a benthivore (PB‐morph) and a piscivore (PP‐morph), have evolved under identical abiotic conditions with constant low light and temperature levels in their deep‐water habitat, and were morphologically most similar. However, they differed in important head traits (e.g., eye and mouth size) related to their different diet specializations. The small‐sized PB‐morph had a paedomorphic appearance with a blunt head shape, large eyes, and a deep body shape adapted to their profundal lifestyle feeding on submerged benthos from soft, deep‐water sediments. The PP‐morph had a robust head, large mouth with numerous teeth, and an elongated body shape strongly related to their piscivorous behavior. The littoral spawning omnivore morph (LO‐morph) predominantly utilizes the shallow benthic–pelagic habitat and food resources. Compared to the deep‐water morphs, the LO‐morph had smaller head relative to body size. The LO‐morph exhibited traits typical for both shallow‐water benthic feeding (e.g., large body depths and small eyes) and planktivorous feeding in the pelagic habitat (e.g., streamlined body shape and small mouth). The development of morphological differences within the same deep‐water habitat for the PB‐ and PP‐morphs highlights the potential of biotic factors and ecological interactions to promote further divergence in the evolution of polymorphism in a tentative incipient speciation process. The diversity of deep‐water charr in this study represents a novelty in the Arctic charr polymorphism as a truly deep‐water piscivore morph has to our knowledge not been described elsewhere.     

The functional significance of inherited differences in feeding morphology in a sympatric polymorphic population of Arctic charr

Artificially fertilised eggs from wild-caught Arctic charr parents of two sympatric morphs (benthivorous and planktivorous) from Loch Rannoch, Scotland were reared in the laboratory under identical conditions. During the subsequent 2 years, aspects of their trophic anatomy and feeding behaviour were compared. As previously described for wild-caught fish, charr derived from the benthivorous morph had an increasingly wider mouth gape for a given body length than those derived from the planktivorous morph. The functional significance of these differences in gape was tested by comparing the maximum size of prey that could be handled by each of the two morphs. In both forms, a larger gape enabled larger food particles to be eaten, but the elevation of the regression of maximum prey size on gape was higher in the benthivorous form, indicating the existence of additional morphological and/or behavioural differences influencing the size of prey consumed. When offered a choice between a typical benthic prey item and a typical pelagic food item, charr of benthivorous origin were more likely to feed on the former, whereas those of planktivorous origin were more likely to feed on the latter. Thus inherited differences in gape place constraints on foraging ability and are associated with inherited differences in dietary preference. We conclude that the functional significance of the foraging specialisations indicate a strong selection pressure for the evolution of the divergence and propose that heterochronic growth is the mechanism resulting in the divergence of tropic anatomy.     

Allometric trajectories of body and head morphology in three sympatric Arctic charr (Salvelinus alpinus (L.)) morphs

A study of body and head development in three sympatric reproductively isolated Arctic charr (Salvelinus alpinus (L.)) morphs from a subarctic lake (Skogsfjordvatn, northern Norway) revealed allometric trajectories that resulted in morphological differences. The three morphs were ecologically assigned to a littoral omnivore, a profundal benthivore and a profundal piscivore, and this was confirmed by genetic analyses (microsatellites). Principal component analysis was used to identify the variables responsible for most of the morphological variation of the body and head shape. The littoral omnivore and the profundal piscivore morph had convergent allometric trajectories for the most important head shape variables, developing bigger mouths and relatively smaller eyes with increasing head size. The two profundal morphs shared common trajectories for the variables explaining most of the body and head shape variation, namely head size relative to body size, placement of the dorsal and pelvic fins, eye size and mouth size. In contrast, the littoral omnivore and the profundal benthivore morphs were not on common allometric trajectories for any of the examined variables. The findings suggest that different selective pressures could have been working on traits related to their trophic niche such as habitat and diet utilization of the three morphs, with the two profundal morphs experiencing almost identical environmental conditions.     

Characterizing neutral and adaptive genomic differentiation in a changing climate: The most northerly freshwater fish as a model

Arctic freshwater ecosystems have been profoundly affected by climate change. Given that the Arctic charr (Salvelinus alpinus) is often the only fish species inhabiting these ecosystems, it represents a valuable model for studying the impacts of climate change on species life‐history diversity and adaptability. Using a genotyping‐by‐sequencing approach, we identified 5,976 neutral single nucleotide polymorphisms and found evidence for reduced gene flow between allopatric morphs from two high Arctic lakes, Linne'vatn (Anadromous, Normal, and Dwarf) and Ellasjøen (Littoral and Pelagic). Within each lake, the degree of genetic differentiation ranged from low (Pelagic vs. Littoral) to moderate (Anadromous and Normal vs. Dwarf). We identified 17 highly diagnostic, putatively adaptive SNPs that differentiated the allopatric morphs. Although we found no evidence for adaptive differences between morphs within Ellasjøen, we found evidence for moderate (Anadromous vs. Normal) to high genetic differentiation (Anadromous and Normal vs. Dwarf) among morphs within Linne'vatn based on two adaptive loci. As these freshwater ecosystems become more productive, the frequency of sympatric morphs in Ellasjøen will likely shift based on foraging opportunities, whereas the propensity to migrate may decrease in Linne'vatn, increasing the frequency of the Normal morph. The Dwarf charr was the most genetically distinct group. Identifying the biological basis for small body size should elucidate the potential for increased growth and subsequent interbreeding with sympatric morphs. Overall, neutral and adaptive genomic differentiation between allopatric and some sympatric morphs suggests that the response of Arctic charr to climate change will be variable across freshwater ecosystems.     

Latitudinal variation in growth among Arctic charr in eastern North America: evidence for countergradient variation?

Biological data from 66 populations of Arctic charr, Salvelinus alpinus, from eastern North America were analysed to test the applicability of the countergradient hypothesis as an explanation of differences in seasonally adjusted growth rates. Samples were obtained along a 37° latitudinal gradient and partitioned among anadromous, normal lacustrine, and dwarf lacustrine Arctic charr morphotypes. Models relating length-at-age or age-specific growth rates to latitude were estimated for each morphotype. Length-at-age declined with latitude for anadromous and lacustrine charr. Age-specific growth rates also varied with latitude, particularly for normal lacustrine charr. Results of analyses provide support for the countergradient hypothesis in growth performance of normal lacustrine morphotypes, where northern populations compensate for the shorter growth season with a greater rate of growth than southern populations. Anadromous charr exhibited equivocal evidence of countergradient variation, while results for dwarf lacustrine Arctic charr populations were inconclusive owing to the limited range of ages, and latitudes for which data were available.     

The genetics of sympatric Arctic charr [Salvelinus alpinus (L.)] populations from Loch Rannoch, Scotland

Two morphologically and ecologically distinct forms of Arctic charr, Salvelinus alpinus , are found in Loch Rannoch, Scotland. The differences in morphology are adaptations to different modes of life, one being pelagic, the other benthic. Both forms have been the subjects of extensive genetic studies including cytogenetics, nuclear and mitochondrial DNA analysis, and protein electrophoresis. Significant differences between the two forms are revealed by some techniques but not others and provide evidence for the reproductive isolation of these two morphs. The findings are discussed in relation to the derivation of sympatry and the phylogenetics of Arctic charr.