Effects of nutrient (N,P, C) enrichment upon the littoral diatom community of an oligotrophic high-mountain lake

The effects of nutrient additions upon the epilithic diatom communities and the algal standing crop were investigated in the oligotrophic, softwater Lake Piccolo Naret, situated in the Swiss alps. Nutrient-diffusing flower pot substrates were filled with either N (0.15 mol NaNO₃), P (0.015 mol Na₂HPO₄) or C (0.15 mol NaHCO₃) or combinations of them. Twenty-five pots representing eight treatments were placed into the lake in July 1991 and sampled after 42 days of exposure.On the surfaces of all pots containing P we measured higher algal biomasses as on the control pots. The chlorophyll-a maximum of 12.9 µg cm^{– 2} was obtained on NPC pots (0.47 µg cm^{– 2} on control pots). On pots with P, NP or NPC supply high amounts of green algae were detected, also reflected in an increased chl-b/chl-c ratio related to the controls which showed algal communities dominated by diatoms.The diatom communities on the control pots as well as on the pots with N, P and NP had a structure similar to the epilithic community in Lake Piccolo Naret (dominance identity > 58 %). However, the community structures of the diatoms from pots with C addition (C, NC, PC and NPC) differed considerably. This is discussed in view of the cell densities of dominant diatom species. For further comparisons the results of two additional high-mountain lakes are used. By means of a cluster analysis it could be shown that epilithic diatom communities were considerably influenced by C addition, while N and P supply were of minor importance.     

Phytoplankton from Tehuantepec River, Oaxaca, Mexico and some biogeographical relationships

Phytoplankton species collected from the limnetic to euryhaline sections of Tehuantepec River were identified, classified and compared with regional information from Mexico and South America. We collected 15 samples every three months from July 1997 through August 1998 with a 20 microm net and a Van Dorn bottle. Indicator values and a code checklist are included. A total of 58 families, 121 genera, 273 species, one subspecies, 75 varieties, 13 forms and one morphotype were identified in the taxa Bacillariophyta (42.0 %), Chlorophyta (29.0 %), Cyanoprocaryota (18.0 %), Euglenophyta (5.0 %), Dinophyta (3.0 %), Cryptophyta (2.0 %) and Chrysophyta (1.0 %). The predominant families were Scenedesmaceae (24 species), Oocystaceae (22), Bacillariophyceae (21), Chaetocerotaceae (15) and Euglenaceae (14). Five families, eight genera, 72 species, 45 varieties and eight forms are first records for Mexico. The species Chroococcus turgidus, Microcystis flosaquae and Pseudanabaena limnetica (which produce massive blooms or red tides) are important in this river of moderate water quality.     

Ecological and biogeographical studies on the tropical rain forest of south Yunnan,SW China with a special reference to its relation with rain forests of tropical Asia

Abstract. Ecological and biogeographic analyses of the tropical rain forest in south Yunnan were made using data from seventeen sample plots and floristic inventories of about 1000 species of seed plants. The rain forest is shown to be a type of true tropical rain forest because it has almost the same profile, physiognomic characteristics, species richness per unit area, numbers of individuals in each tree species and diameter classes of trees as classic lowland tropical rain forests. As the area is at the northern margin of monsoonal tropics, the rain forest differs from equatorial lowland rain forests in having some deciduous trees in the canopy layer, fewer megaphanaerophytes and epiphytes but more species of lianas as well as more species of microphylls. In its floristic composition, about 80% of total families. 94% of total genera and more than 90% of total species are tropical, of which about 38% of genera and 74% of species are tropical Asian. Furthermore, the rain forest has not only almost the same families and genera, but also the same families rank in the top ten both in species richness and in dominance of stems, as lowland forests in southeast Asia. It is indisputable that the flora of the rain forest is part of the tropical Asian flora. However, most of the tropical families and genera have their northern limits in south Yunnan and most have their centre of species diversity in Malesia. More strictly tropical families and genera have relatively lower species richness and importance compared with lowland rain forests in tropical southeast Asia. Thus, the flora also shows characteristics of being at the margin of the tropics. Based mainly on physiognomy and floristic composition the tropical rain forest of Yunnan is classified into two types, i.e. seasonal rain forest and wet seasonal rain forest, the latter is further divided into two subtypes, i.e. mixed rain forest and dipterocarp rain forest. From analysis of geographic elements it is also shown that the tropical rain forest of Yunnan occurs at a geographical nexus with its flora coming mainly from four sources, i.e. Malesia, south Himalayas, Indochina and China.     

Benthos of a seasonally-astatic, saline, soda lake in Mexico

The benthic macroinvertebrate community (BMC) of Lake Tecuitlapa Sur, central Mexico, was monitored to determine the structure of the community (i.e. species composition, richness, abundance and biomass), throughout an annual cycle. Tecuitlapa Sur is shallow, seasonally-astatic, warm, mesosaline, and soda-alkaline. The physical, chemical and biological variables were determined monthly for a yearly cycle. Tecuitlapa Sur displayed a seasonal patterns of dilution (June–August) and concentration (September–November) phases. Salinity and pH were the most important parameters explaining environmental variance. The BMC consisted of two species: Culicoides occidentalis sonorensis (Diptera: Ceratopogonidae) and Tanypus Apelopia sp. (Diptera: Chironomidae). C. occidentalis was the most important species both numerically and in biomass (95%). Annual density (mean ± sd) of C. occidentalis (1141082 ± 2765879 ind. m^–2, n = 120) was notably higher than other reported for other saline water bodies. However, the mean annual density of T. Apelopia (6782 ± 8310 ind. m^–2, n = 120) was similar to other saline lakes. Seasonal abundance and biomass dynamics of the BMC showed an increasing trend until October (T. Apelopia) and November (C. occidentalis), when massive emergence occurred, just before the lake dried out. Contrary to most temporal waters, Tecuitlapa Sur did not show taxonomic or trophic succession. C. occidentalis, a transient detritivore, dominated over T. Apelopia, a resident predator during the wet period.     

Vertical diffusion and nutrient transport in a tropical lake (Lake McIlwaine,Rhodesia)

Measurements of the vertical temperature in tropical Lake McIlwaine were used to calculate the time-averaged ( 6 months) vertical diffusivity coefficient (K_z) in the metalimnion and hypolimnion. The mean value of K_z (0.21 cm² s^–1) was correlated with the lake surface area. The mass transport rates of PO₄-P and NH₄-N, upward from the hypolimnion to the metalimnion, were calculated using K_z and measured values of the nutrient concentration gradients. During a period of 4.5 months when the water was stably stratified, PO₄-P was transported upward at a mean rate of 42 kg day^–1 and NH₄-N at a mean rate of 162 kg day^–1 over the entire lake.     

Characterization of a Chromobacterium haemolyticum population from a natural tropical lake

Aim: To study genetic diversity of Chromobacterium haemolyticum isolates recovered from a natural tropical lake. Methods and Results: A set of 31 isolates were recovered from a bacterial freshwater community by conventional plating methods and subjected to genetic and phenotypic characterization. The 16S ribosomal RNA (rRNA) gene phylogeny revealed that the isolates were related most closely with C. haemolyticum. In addition to the molecular data, our isolates exhibited strong β‐haemolytic activity, were nonviolacein producers and utilized i‐inositol, d ‐mannitol and d ‐sorbitol in contrast with the other known chromobacteria. Evaluation of the genetic diversity in the 16S rRNA gene, tRNA intergenic spacers (tDNA) and 16S‐23S internal transcribed spacers (ITS) unveiled different levels of genetic heterogeneity in the population, which were also observed with repetitive extragenic palindromic (rep)‐PCR genomic fingerprinting using the BOX‐AR1 primer. tDNA‐ and ITS‐PCR analyses were partially congruent with the 16S rRNA gene phylogeny. The isolates exhibited high resistance to β‐lactamic antibiotics. Conclusion: The population genetic heterogeneity was revealed by 16S rRNA gene sequence, ITS and BOX‐PCR analysis. Significance and Impact of the Study: This study provides for the first time an insight into the genetic diversity of phylogenetically close isolates to C. haemolyticum species.     

Abundance and production of bacteria, and relationship to phytoplankton production, in a large tropical lake (Lake Tanganyika)

1. Abundance and bacterial production (BP) of heterotrophic bacteria (HBact) were measured in the north and south basins of Lake Tanganyika, East Africa, during seasonal sampling series between 2002 and 2007. The major objective of the study was to assess whether BP can supplement phytoplankton particulate primary production (particulate PP) in the pelagic waters, and whether BP and particulate PP are related in this large lake. HBact were enumerated in the 0–100 m surface layer by epifluorescence microscopy and flow cytometry; BP was quantified using ³H‐thymidine incorporation, usually in three mixolimnion layers (0–40, 40–60 and 60–100 m). 2. Flow cytometry allowed three subpopulations to be distinguished: low nucleic acid content bacteria (LNA), high nucleic acid content bacteria (HNA) and Synechococcus‐like picocyanobacteria (PCya). The proportion of HNA was on average 67% of total bacterial abundance, and tended to increase with depth. HBact abundance was between 1.2 × 10⁵ and 4.8 × 10⁶ cells mL⁻¹, and was maximal in the 0–40 m layer (i.e. roughly, the euphotic layer). Using a single conversion factor of 15 fg C cell⁻¹, estimated from biovolume measurements, average HBact biomass (integrated over a 100‐m water column depth) was 1.89 ± 1.05 g C m⁻². 3. Significant differences in BP appeared between seasons, especially in the south basin. The range of BP integrated over the 0–100 m layer was 93–735 mg C m⁻² day⁻¹, and overlapped with the range of particulate PP (150–1687 mg C m⁻² day⁻¹) measured in the same period of time at the same sites. 4. Depth‐integrated BP was significantly correlated to particulate PP and chlorophyll‐a, and BP in the euphotic layer was on average 25% of PP. 5. These results suggest that HBact contribute substantially to the particulate organic carbon available to consumers in Lake Tanganyika, and that BP may be sustained by phytoplankton‐derived organic carbon in the pelagic waters.     

Historical biogeography and distribution of the freshwater cyclopine copepods (Copepoda, Cyclopoida, Cyclopinae) of the Yucatan Peninsula, Mexico

Aim To determine and analyse the distribution of the freshwater cyclopine copepod fauna of the Yucatan Peninsula (YP) and its relationship with the geological and climatic history of this Neotropical karstic zone. Location The Yucatan Peninsula, Mexico. Methods Plotting of georeferenced sites, analysis of local and regional geological and climatic history, analysis and comparison of regional and local faunistic records. Results Distinct dispersal and/or vicariant processes seem to be linked to the current distributions of the seven genera known in the YP. In general, the endemic hypogean or benthic crevicular forms (i.e. Diacyclops chakan, D. puuc and Mesocyclops chaci), derived from epigean, tropical, widely distributed forms (some of them South American) may have been among the earliest colonizers of the subterranean habitats in the YP. The distribution of these and other endemic forms seem to be related to the Holocene dry periods that desiccated the largest bodies of water and isolated local populations of different species. These vicariant processes resulted in forms with restricted distributional areas; some of these formed sister species that speciated in geographically close localities but related to a common identifiable ancestor. Overall, the processes of cyclopine colonization of the YP show the influence of the South American fauna, as the closest relatives of some species endemic to the YP are South American forms; the Nearctic influence is low. The cyclopine fauna of the YP is formed by a mixture of Nearctic‐derived (species of Acanthocyclops), Neotropical (i.e. M. edax, M. longisetus, A. panamensis, Thermocyclops inversus and T. tenuis), and epigean and hypogean endemic forms. The highly dynamic geomorphology of the YP and the recent climatic changes in the Holocene define the YP as a peculiar subregion that harbours a diverse fauna of cyclopine copepods with a high endemism. Main conclusion The current distribution of cyclopine copepods reflects relatively recent, post‐Pliocene biogeographical patterns; probably older patterns are involved as well. The eastern coast of the Yucatan is the most recently colonized by cyclopine copepods. Most of the genera are linked with South American forms, and the Nearctic influence is weakly represented. This group has no marine relatives, but there is evidence of vicariant events involving cave‐dwelling forms.     

Historical biogeography and distribution of the freshwater calanoid copepods (Crustacea: Copepoda) of the Yucatan Peninsula, Mexico

Aim To determine and analyse the distribution of the freshwater calanoid copepod (Diaptomidae and Pseudodiaptomidae) fauna of the Yucatan Peninsula (YP) and its relation to the geological history of this Neotropical karstic plain. Location The Yucatan Peninsula, Mexico. Methods Plotting of geo‐referenced sites, analysis of local and regional geological history, analysis and comparison of regional and local records. Results The current composition and distribution of Diaptomidae and Pseudodiaptomidae in the YP mainly reflects recent, post‐Pliocene colonization events. This invasion did not reach America, but only parts of Central America (CA). The presence of diaptomids in the continent since the pre‐Cretaceous and the presumed post‐Cretaceous (Palaeocene–Oligocene) radiation of Diaptomidae in Middle America suggest earlier colonizations of the YP. The marine transgressions kept most of the YP submerged in different geological periods, thus eliminating any original primary freshwater colonizers, such as the diaptomids. The periods of marine regression probably represented opportunities for new waves of diaptomid colonization of the YP. The latest dispersal of diaptomids in the YP during the Holocene (8000 yr bp ) was probably an intermittent process because of the alternative dry and wet periods and interglacial transgressions. The presence of the Nearctic Leptodiaptomus and Arctodiaptomus in the YP and the current distribution of Mastigodiaptomus might represent remnants of earlier invasions of Diaptomidae in Middle America. The Neotropical Mastigodiaptomus probably originated in the Late Cretacic CA/proto‐Antilles complex. Forms derived from a M. albuquerquensis type ancestor radiated into the YP leaving relatively isolated populations of three species in the northern half of the peninsula. The distribution of the brackish water Pseudodiaptomus marshi well inside the coastline might have resulted from stranding and subsequent adaptation of this species during a marine regression in the Bacalar formation; this agrees with the vision of this taxon as being in process of invasion of freshwater environments. Main conclusions It is not probable that the South American (SA) diaptomid fauna originated from an invasion of upper Neotropical/Nearctic forms. The current distribution of freshwater calanoid copepods reflects relatively recent, post‐Pliocene biogeographical patterns, but probably older patterns are involved as well. The northern and eastern coasts of the Yucatan are the most recently colonized by diaptomids. Differing from other freshwater groups surveyed in the Yucatan that have marine relatives (i.e. fishes, amphipods, isopods, mysids, macrocrustaceans), there is no evidence of local vicariant events involving cave‐dwelling forms or marine relicts in the diaptomid fauna of the YP.     

The ecological relationships of aquatic plants at Lake Naivasha,Kenya

The distribution and abundance of the aquatic flora of Lake Naivasha has been constrained by two ecosystem-level processes. One is the natural and unpredictable fluctuation of water levels which the lake experiences, resulting in a drawdown zone of several vertical meters. The other is the consequence of herbivory by several alien species, linked with competition between rooted aquatic plants and phytoplankton. The effects of alien introductions in the 1960s and 1970s was to eliminate submerged vegetation from the lake completely by 1982, principally by crayfish herbivory. Vegetation has been progressively returning since 1984 and this return is coincident with a decline in crayfish population density. Concentrations of phytoplankton have progressively increased since 1982 as a result of nutrient increase caused by a decline in water level and papyrus swamp clearance for agriculture. The relationship between high levels of phytoplankton and extensive littoral weed beds is discussed.     

Seasonality and abundance of some dominant crustacean zooplankton in Lake Awasa,a tropical rift valley lake in Ethiopia

The zooplankton of a Rift Valley lake in Ethiopia, Awasa, was sampled at 3 stations for 2 years (1986 and 1987) concurrently with various meteorological and limnological measurements. The spatial and temporal variation in abundance of some numerically dominant crustaceans, Mesocyclops aequatorialis similis (Copepoda), Thermocyclops consimilis (Copepoda) and Diaphanosoma excisum (Cladocera) is discussed. Temporal (months, sampling dates) rather than spatial (station) variability accounts for more than 50% of the total variance in zooplankton abundance but horizontal patchiness exists during periods of high zooplankton density. Sampling errors were generally low, except for counts of cyclopoid nauplii (subsampling) and Diaphanosoma (inter-replicate variance). Zooplankton showed distinct seasonality associated with the mixing cycle of the lake. Total numbers increased to more than 200 000 m⁻³ during the unstratified period (July to September). Low numbers were evident during stratification (February to May) when zooplankton numbers did not exceed 15 000 m⁻³. Individual zooplankton species and age classes showed variable seasonal amplitudes, ranging from 6.4 (nauplius 3) to 44.8 (copepodite 3 of Mesocyclops). We discuss some possible causes for zooplankton seasonality in Lake Awasa, and also review zooplankton seasonal cycles in other tropical lakes, especially African ones.     

Persistence, extinction and different species pools within the flora of lake islands in western Ireland

The vascular flora on twenty-nine lake islands in Lough Corrib, western Ireland was surveyed in 1992–93. Thirteen of these islands had been surveyed by the author in 1974 (Roden, 1979). Data on species–area curves and species turnover between 1974 and 1992 are presented. Species numbers on each island did not change greatly in the 18-year interval and extinctions were most common on smaller islands. It is known that six of the islands surveyed are less than 150 years old and their flora must have immigrated over open water during that period. It is shown that this group of species has a different log species/log area regression than the remaining flora, with a much shallower slope (low Z value). The proportion of less widespread species was greatest on islands nearest to the mainland. The implication of different slopes in different species groups and the restriction of turnover to rare species is discussed with reference to the island Theory of Biogeography.     

Plankton dynamics in a tropical floodplain lake: fish, nutrients, and the relative importance of bottom-up and top-down control

1. Two enclosure experiments were carried out in Laguna Bufeos, a neotropical várzea lake located in the floodplain of River Ichilo (Bolivia). The experiments aimed (i) to assess the relative importance of bottom‐up and top‐down control on the plankton community, (ii) to assess the relative impact of direct and indirect effects of planktivorous fish on the zooplankton, and (iii) to attempt to identify the mechanisms responsible for these effects. 2. During the first experiment, bottom‐up control seemed to dominate the planktonic food web. Compared with fishless enclosures, oxygen concentrations, chlorophyll a levels and the population densities of all cladoceran zooplankton taxa increased in enclosures with fish. Birth rates of Moina minuta, the dominant taxon, were substantially higher in the presence than in the absence of fish, whereas death rates did not differ between treatments. These results are the first to suggest that the positive effects of fish on crustacean zooplankton via effects on nutrient cycling and the enhancement of primary production can compensate for losses because of fish‐related mortality. 3. During the second experiment, the direction of control appeared to vary between trophic levels: the phytoplankton appeared to be bottom‐up controlled whereas the zooplankton was mainly top‐down controlled. Chlorophyll a concentrations were enhanced by both fish and nutrient additions. The majority of the zooplankton taxa were reduced by the presence of fish. Birth rates of most cladoceran taxa did not differ between treatments, whereas death rates were higher in the enclosures with fish than in the fishless enclosures. Bosminopsis deitersi reached higher densities in the presence of fish, probably because of a release from predation by Chaoborus. 4. We convincingly showed strong deviations from trophic cascade‐based expectations, supporting the idea that trophic cascades may be weak in tropical lakes.     

Evaluation of Colilert-18 for the detection of coliforms and Escherichia coli in tropical fresh water

AIMS: To evaluate the suitability of Colilert-18 in detecting Escherichia coli and total coliforms in tropical freshwater samples. METHODS AND RESULTS: Target organisms were isolated from yellow-fluorescent and yellow wells of Colilert-18/Quanti-Tray using m-TEC agar and m-ENDO LES agar respectively. All the selected isolates were first identified based on their fatty acid methyl ester profile. Isolates showing contradictory results to that of the Colilert-18 procedure were re-identified using API 20E strips. A total of 357 isolates, 177 from yellow-fluorescent wells and 180 from yellow wells, were identified. CONCLUSIONS: The false-positive and -negative rates for E. coli detection using Colilert-18 were 36.4% and 11%, respectively, while for coliform detection the false-positive rate was 10.3%. SIGNIFICANCE AND IMPACT OF THE STUDY: The high false-positive rate of Colilert-18, tempers its value for E. coli detection when used for tropical freshwater samples.     

The importance of the littoral epiphyton as food for commercial fish in the recent African man-made lake, Nyumba ya Mungu reservoir, Tanzania

Nyumba ya Mungu reservoir is a man-made lake in the Kilimanjaro region of northern Tanzania. The commercial fisheries are principally based on the cichlids, Sarotherodon pangani Lowe, S. jipe Lowe, S. esculentus Graham, and Tilapia rendalli Boulenger.
Examination of gut contents revealed that the dominant species, S. pangani and S. jipe , fed on the epiphyton attached to the vegetation in the littoral zone, S. esculentus was a phytoplankton filter feeder, and T. rendalli consumed macrophytes and associated epiphytes.
A fish exclosure quantitatively demonstrated that the epiphyton community was appreciably depleted by the grazing of fish. After 35 days the mean epiphyton density on the submerged surfaces of Cyperus articulatus L. within the exclosure was 285 times 10³ individuals cm^-2 shoot, but only 181 times 10³ individuals cm^-2 shoot on grazed surfaces outside the exclosure. The differences were statistically significant, and corresponded to a difference in biomass of about 6.5 g organic dry weight m^-2 lake surface. Vertical profiles of periphyton density on Cyperus indicated that fish grazed mainly below a depth of 100 mm from the water surface.
The littoral epiphyton → commercial fish food chain, which may be unique, is considered to predominate in Nyumba ya Mungu, and is compared with the major food chains of commercial fish in some other African natural and man-made lakes.     

On the ecology of <Emphasis Type="Italic">Caecidotea williamsi</Emphasis> Escobar-Briones &; Alcocer (Crustacea: Isopoda: Asellidae) from Alchichica saline lake,Central Mexico

Caecidotea williamsi Escobar-Briones & Alcocer (2002) is the first asellid described from a saline aquatic habitat in America, Alchichica crater-lake, Puebla, Central Mexico. No previous reports exist for asellid isopods from inland saline waters in America in spite of the extensive research undertaken so far on the continent. Differing from other asellids, C. williamsi inhabits saline waters (i.e. 8.5 g l⁻¹) dominated by sodium, magnesium, chloride, and bicarbonate ions and markedly alkaline (pH 9.0 ± 0.1). Water temperature ranges from 14.5°C throughout the water column in winter and in the deep waters for the rest of the year, up to 20°C in the surface waters in summer. C. williamsi occurs in a depth range of surface to 30 m (lake’s maximum depth is 64 m), below which an anoxic layer is found during 9 months of the year. Generally it lives cryptically in tufa crevices and at shallower depths many inhabit empty trichopteran cases embedded within the tufa crevices. Some specimens are heavily covered by epizooic ciliates on the thoracic and abdominal segments of the exoskeleton and the pleopods. Data are presented on the diet, possible predators, saprobity and trophism, and regional distribution of C. williamsi. The continued survival of this unique isopod is threatened by anthropogenic desiccation of its habitat. Guest Editor: John M. Melack Saline Water and their Biota     

Feeding of the exotic Louisiana red swamp crayfish,Procambarus clarkii (Crustacea,Decapoda), in an African tropical lake: Lake Naivasha,Kenya

The Louisiana red swamp crayfish, Procambarus clarkii, has had a major impact on aquatic ecosystems in Europe and America where it has been introduced for human consumption. In Lake Naivasha, where it was introduced in 1970, it is suspected of causing the complete disappearance of native floating-leaved and submerged plants by 1982 and again by 1996; recovery of submerged plants occurred in between, concurrent with a decline in P. clarkii. Examination of the feeding of P. clarkii by microscopic analysis of gut contents collected from the lake confirmed information from both its native and exotic ranges; that it is an omnivore with green plants and insects the predominant items recognised. Feeding experiments confirmed this omnivory, with a preference from herbivory over carnivory. They further showed the importance of native plants as opposed to exotic water hyacinth Eichhornia crassipes. It is concluded that P. clarkii could well have accounted for the observed elimination of native plant species in Lake Naivasha; the cyclical nature of populations of submerged plant species and of P. clarkii in inverse proportion to each other lead us to hypothesise that P. clarkii is a `keystone' species in the lake ecosystem.     

The molecular diversity of the methanogenic community in a hypereutrophic freshwater lake determined by PCR-RFLP

AIMS: To combine database-held sequence information with a programme of experimental molecular ecology to define the methanogenic community of a hypereutrophic lake by a PCR-restriction fragment length polymorphism (RFLP) analysis. METHODS AND RESULTS: Methanogen diversity in a hypereutrophic freshwater lake was analysed using 16S rDNA PCR-RFLP. Database-held 16S rRNA gene sequences for 76 diverse methanogens were analysed for specific restriction sites that permitted unequivocal differentiation of methanogens. Restriction digestion and agarose gel electrophoresis of the 16S rDNA from selected methanogen pure cultures generated observed restriction profiles that corroborated the expected patterns. This method was then tested by analysing methanogen diversity in samples obtained over 1 year from sediment and water samples taken from the same sampling site. CONCLUSIONS: Restriction analysis of the 16S rRNA gene sequences from 157 methanogen clones generated from lakewater and sediment samples showed that over 50% were similar to Methanoculleus spp. Furthermore, a total of 16 RFLP types (1-16) were identified, eight of which contained no cultured representative archaeal 16S rRNA gene sequences. SIGNIFICANCE AND IMPACT OF THE STUDY: This RFLP strategy provides a robust and reliable means to rapidly identify methanogens in the environment.     

Bacterial and archaeal assemblages in sediments of a large shallow freshwater lake, Lake Taihu, as revealed by denaturing gradient gel electrophoresis

Aims:  To explore the association of microbial community structure with the development of eutrophication in a large shallow freshwater lake, Lake Taihu.
Methods and Results:  The bacterial and archaeal assemblages in sediments of different lake areas were analysed using denaturing gradient gel electrophoresis (DGGE) of amplified 16S rDNA fragments. The bacterial DGGE profiles showed that eutrophied sites, grass-bottom areas and relatively clean sites with a eutrophic (albeit dredged) site are three respective clusters. Fifty-one dominant bacterial DGGE bands were detected and 92 corresponding clones were sequenced, most of which were affiliated with bacterial phylotypes commonly found in freshwater ecosystems. Actinobacteria were detected in the centre of the lake and not at eutrophied sites whereas the opposite was found with respect to Verrucomicrobiales . Twenty-five dominant archaeal DGGE bands were detected and 31 corresponding clones were sequenced, most of which were affiliated with freshwater archaeal phylotypes.
Conclusions:  The bacterial community structures in the sediments of different areas with similar water quality and situation tend to be similar in Taihu Lake.
Significance and Impact of the Study:  This study may expand our knowledge on the relationship between the overall microbial assemblages and the development of eutrophication in the shallow freshwater lake.