Spatial model for predicting the presence of cinnamon fungus (Phytophthora cinnamomi) in sclerophyll vegetation communities in south‐eastern Australia

Abstract The pathogen Phytophthora cinnamomi causes extensive ‘dieback’ of Australian native vegetation. This study investigated the distribution of infection in an area of significant sclerophyll vegetation in Australia. It aimed to determine the relationship of infection to site variables and to develop a predictive model of infection. Site variables recorded at 50 study sites included aspect, slope, altitude, proximity to road and road characteristics, soil profile characteristics and vegetation attributes. Soil and plant tissues were assayed for the presence of the pathogen. A geographical information systyem (GIS) was employed to provide accurate estimations of spatial variables and develop a predictive model for the distribution of P. cinnamomi. The pathogen was isolated from 76% of the study sites. Of the 17 site variables initially investigated during the study a logistic regression model identified only two, elevation and sun‐index, as significant in determining the probability of infection. The presence of P. cinnamomi infection was negatively associated with elevation and positively associated with sun‐index. The model predicted that up to 74% of the study area (11 875 ha) had a high probability of being affected by P. cinnamomi. However, the present areas of infection were small, providing an opportunity for management to minimize spread into highly susceptible uninvaded areas.     

Distribution of Phytophthora cinnamomi at different spatial scales: When can a negative result be considered positively?

Abstract In October 1999, patches of dead and dying trees were identified in rainforest vegetation throughout the Tully Falls area in north Queensland, Australia. Previous incidents of patch death in the region had been attributed to Phytophthora cinnamomi. The distribution of P. cinnamomi was assessed by testing for its presence in seven sites displaying signs of dieback and seven sites that appeared healthy. Each site was a circular quadrat, 20‐m radius (total area = 1256.6 m²). Within each quadrat, two perpendicular line transects were constructed. A single soil sample (250 g) was taken at the centre point and at 1‐m intervals along each transect. All soil samples were tested for the presence of P. cinnamomi using a combination of lupin baiting, subsequent culturing and microscopic identification. Of the 1134 samples, 783 recorded positive responses. The mean number of positive responses was not significantly greater in patch death sites than in control sites, suggesting that at this scale of resolution the distribution of P. cinnamomi was uniform. However, at spatial scales of 1‐m intervals across transects the distribution of P. cinnamomi was random.     

Phosphite stimulated histological responses of Eucalyptus marginata to infection by Phytophthora cinnamomi

Phosphite is used to protect plants from the soil borne pathogen, Phytophthora cinnamomi. Although phosphite stimulates resistance to P. cinnamomi, this is the first histological study of its effect on Eucalyptus marginata, an economically important forest tree in Western Australia. Clonal lines of E. marginata, considered resistant and susceptible to P. cinnamomi, were underbark inoculated with P. cinnamomi. 4 days later, they were treated with 0, 2.5, 5 or 10 g L⁻¹ phosphite. Transverse hand sections were stained for suberin and lignin, and histological responses to infection were examined. Defence responses were stimulated at all phosphite concentrations in both clonal lines, and the genotypic difference in lesion length was eliminated within 8 days of treatment. In the resistant line, suberin production was stimulated while in the susceptible line both lignin and suberin were stimulated. By 2 days after treatment, phosphite stimulated a faster rate of suberin production in the resistant line than the susceptible line, but by 4 days after treatment, there was no difference in the increase between the lines. Damage caused by P. cinnamomi was found to extend furthest in the cortex and outer phloem in transverse sections in both genotypes. In the presence of P. cinnamomi, phosphite stimulated mitosis as part of the defence response, with meristematic activity involved in the compartmentalisation of damaged tissue (formation of periderm) and closure of healthy tissue (callus). Phytotoxicity had a detrimental effect in healthy tissues and this was more apparent in the resistant line, where it did not provide the best protection from lesion extension and plant mortality, suggesting phytotoxicity could disrupt defence responses. Phosphite increases the capacity of susceptible and resistant E. marginata clonal lines to wall-off and contain P. cinnamomi colonisation through lignin and suberin deposition, and increased meristematic activity.     

The Microscopic Examination of Phytophthora cinnamomi in Plant Tissues Using Fluorescent In Situ Hybridization

The microscopic examination of Phytophthora cinnamomi in plant tissues is often difficult as structures such as hyphae, chlamydospores and oospores are frequently indistinguishable from those of other fungi and oomycetes, with histological stains not enabling species differentiation. This lack of staining specificity makes the localization of P. cinnamomi hyphae and reproductive structures within plant tissues difficult, especially in woody tissues. This study demonstrates that with the use of a species‐specific fluorescently labelled DNA probe, P. cinnamomi can be specifically detected and visualized directly using fluorescent in situ hybridization (FISH) without damage to plant or pathogen cell integrity or the need for subculturing. This approach provides a new application for FISH with potential use in the detailed study of plant–pathogen interactions in plants.     

Survival of Phytophthora cinnamomi and Fusarium verticillioides in commercial potting substrates for ornamental plants

Live plants, particularly when accompanied by soil or potting substrates, are considered the main pathway for international spread of plant pathogens. Modern, rapid shipping technologies for international plant trade increase the probability of plant pathogen survival during transport and the subsequent chances of disease outbreaks in new locations. The survival of two model pathogens, an Oomycete, Phytophthora cinnamomi, and a filamentous fungus, Fusarium verticillioides, was studied in two different commercial potting substrates (peat and peat‐free) under glasshouse conditions in the absence of a plant host. Survival rates were analysed at 2, 7, 12 and 17 months after substrate inoculation. Fusarium verticillioides had the longest survival rate, and was still present at 17 months. In contrast, P. cinnamomi survived up to 7 months but was not recovered after 12 or 17 months. There was no significant difference in the number of colony‐forming units (CFUs) of either pathogen in the two substrates, except at 2 months, when higher numbers were recovered from peat substrates.     

The potential global distribution of the Bronze bug Thaumastocoris peregrinus Carpintero and Dellapé (Hemiptera: Thaumastocoridae)

相似文献   

Defining Plant Resistance to Phytophthora cinnamomi: A Standardized Approach to Assessment

Phytophthora cinnamomi is a soil‐borne plant pathogen that causes devastating disease in agricultural and natural systems worldwide. While a small number of species survive infection by the pathogen without producing disease symptoms, the nature of resistance, especially under controlled conditions, remains poorly understood. At present, there are no standardized criteria by which resistance or susceptibility to P. cinnamomi can be assessed, and we have used five parameters consisting of plant fresh weight, root growth, lesion length, relative chlorophyll content of leaves and pathogen colonization of roots to analyse responses to the pathogen. The parameters were tested using two plant species, Zea mays and Lupinus angustifolius, through a time course study of the interactions and resistance and susceptibility defined 7 days after inoculation. A scoring system was devised to enable differentiation of these responses. In the resistant interaction with Z. mays, there was no significant difference in fresh weight, root length and relative chlorophyll content in inoculated compared with control plants. Both lesion size and pathogen colonization of root tissues were limited to the site of inoculation. Following inoculation L. angustifolius showed a significant reduction in plant fresh weight and relative leaf chlorophyll content, cessation of root growth and increased lesion lengths and pathogen colonization. We propose that this technique provides a standardized method for plant–P. cinnamomi interactions that could be widely used to differentiate resistant from susceptible species.     

Containment and spot eradication of a highly destructive,invasive plant pathogen (<Emphasis Type="Italic">Phytophthora cinnamomi</Emphasis>) in natural ecosystems

The invasive plant pathogen Phytophthora cinnamomi (Stramenopila, Oomycota) has been introduced into 15 of the 25 global biodiversity hotspots, threatening susceptible rare flora and degrading plant communities with severe consequences for fauna. We developed protocols to contain or eradicate P. cinnamomi from spot infestations in threatened ecosystems based on two assumptions: in the absence of living hosts, P. cinnamomi is a weakly competitive saprotroph; and in the ecosystems we treated, the transmission of the pathogen occurs mainly by root-to-root contact. At two P. cinnamomi-infested sites differing in climate and vegetation types, we applied increasingly robust treatments including vegetation (host) destruction, fungicides, fumigation and physical root barriers. P. cinnamomi was not recovered at three assessments of treated plots 6–9 months after treatments. Given the high rates of recovery of P. cinnamomi from untreated infested soil and the sampling frequency, the probability of failing to detect P. cinnamomi in treated soil was <0.0003. The methods described have application in containing large infestations, eradicating small infestations and protecting remnant populations of threatened species.     

Effect of Brassica Biofumigant Amendments on Different Stages of the Life Cycle of Phytophthora cinnamomi

The oomycete plant pathogen Phytophthora cinnamomi causes a highly destructive root rot that affects numerous hosts. Integrated management strategies are needed to control P. cinnamomi in seminatural oak rangelands. We tested how biofumigation affects crucial stages of the pathogen's life cycle in vitro, in infested soils under laboratory conditions and in planta. Different genotypes of three potential biofumigant plant species (Brassica carinata, Brassica juncea, Brassica napus) were collected at different phenological stages, analysed for their glucosinolate contents, and subsequently tested. The most effective genotypes against mycelial growth and sporangial production were further tested on the viability of chlamydospores in artificially infested natural soils and in planta on Lupinus luteus, a host highly susceptible to P.cinnamomi. Brassica carinata and B. juncea genotypes inhibited mycelial growth, decreased sporangial production, and effectively inhibited the viability of chlamydospores in soil, but only B. carinata decreased disease symptoms in plants. Effective genotypes of Brassica had high levels of the glucosinolate sinigrin. Biofumigation with Brassica plants rich in sinigrin has potential to be a suitable tool for control of oak root disease caused by P. cinnamomi in Spanish oak rangeland ecosystems.     

Trunk injection of fosetyl‐aluminium controls the root disease caused by Phytophthora cinnamomi on Quercus ilex woodlands

In Spain, Quercus open woodlands are animal ranching systems of organic production seriously threatened by the exotic pathogen Phytophthora cinnamomi. The root disease it causes kills thousands of oaks annually. Effective disease management needs to integrate different techniques, and the use of a resistance inducer such as fosetyl‐Al can play a key role, because the use of potassium phosphite is prohibited in Spain. In a woodland where the pathogen recently arrived, 60 holm oaks in three different defoliation classes (asymptomatic, slight and moderate defoliation) were selected for trunk injection with pressurised capsules containing 4% of commercial fosetyl‐Al or water (controls). Holm oaks were checked periodically for defoliation and presence of the pathogen in roots and rhizosphere soil. Three years after treatments, defoliation was significantly lower in oaks treated with fosetyl‐Al, which even increased canopy cover, in comparison with control oaks, independent of the initial defoliation class considered. Chlamydospore density in rhizosphere soil, as well as the presence of the pathogen into the roots, was not significantly influenced by fosetyl‐Al treatments, although a trend to a lower presence of P. cinnamomi in roots was observed in treated oaks at every soil inoculum density detected. This study has shown that fosetyl‐Al, a phosphonate registered as a fungicide in the European Union, provides protection to holm oaks against P. cinnamomi, even exhibiting a therapeutic effect on pre‐existing infections. Consequently, this effective measure should be considered as part of the integrated approach to control this highly destructive pathogen in holm oak woodlands.     

Potential distribution of the invasive tree Triadica sebifera (Euphorbiaceae) in the United States: evaluating climex predictions with field trials

Models that project introduced species distributions based on the climates in native and potential introduced ranges can provide valuable insights on the extent of a species' future spread. Yet, the lack of direct field evaluation of these range projections remains a major limitation. We evaluated results from the climex model in conjunction with results from seed and plant field trials in assessing environmental constraints to spread of the invasive tree Triadica sebifera (Chinese tallow tree) in the southeastern USA. climex incorporates key climatic parameters to generate large‐scale projections of potential distributions based on the climate across the species' current distribution. By employing field trials within microhabitats within and beyond the tree's current range, we were able to determine seed and young plants' response to the heterogeneity of the environment at regional scales. Based on projections of the climex model, T. sebifera has the potential to spread 500 km northward beyond its current distribution in the southeastern USA; minimum temperature and limited precipitation are the key climatic constraints in the eastern and western USA, respectively. climex results correlate strongly with seed germination across sites in the southeastern USA. These results do not however correlate with plant growth rates, which were often higher in sites with low projected climatic suitability. Competition and herbivory were not constraints on the growth of T. sebifera in our field trials and were therefore not responsible for the lack of correlation between model results and plant growth rates. If the minimum and maximum temperatures were to rise by 2 °C, the range of T. sebifera could extend northward 700 km beyond its current distribution. While both climex and the field trials indicate that T. sebifera is capable of extensive northward spread in the eastern USA, results of field trials indicate that the patterns of invasion within the region are likely to vary substantially with local site conditions.     

Rainfall and temperatures changes have confounding impacts on Phytophthora cinnamomi occurrence risk in the southwestern USA under climate change scenarios

Global change will simultaneously impact many aspects of climate, with the potential to exacerbate the risks posed by plant pathogens to agriculture and the natural environment; yet, most studies that explore climate impacts on plant pathogen ranges consider individual climatic factors separately. In this study, we adopt a stochastic modeling approach to address multiple pathways by which climate can constrain the range of the generalist plant pathogen Phytophthora cinnamomi (Pc): through changing winter soil temperatures affecting pathogen survival; spring soil temperatures and thus pathogen metabolic rates; and changing spring soil moisture conditions and thus pathogen growth rates through host root systems. We apply this model to the southwestern USA for contemporary and plausible future climate scenarios and evaluate the changes in the potential range of Pc. The results indicate that the plausible range of this pathogen in the southwestern USA extends over approximately 200 000 km² under contemporary conditions. While warming temperatures as projected by the IPCC A2 and B1 emissions scenarios greatly expand the range over which the pathogen can survive winter, projected reductions in spring rainfall reduce its feasible habitat, leading to spatially complex patterns of changing risk. The study demonstrates that temperature and rainfall changes associated with possible climate futures in the southwestern USA have confounding impacts on the range of Pc, suggesting that projections of future pathogen dynamics and ranges should account for multiple pathways of climate–pathogen interaction.     

Biotic interactions influence the projected distribution of a specialist mammal under climate change

Aim

To measure the effects of including biotic interactions on climate‐based species distribution models (SDMs) used to predict distribution shifts under climate change. We evaluated the performance of distribution models for an endangered marsupial, the northern bettong (Bettongia tropica), comparing models that used only climate variables with models that also took into account biotic interactions.

Location

North‐east Queensland, Australia.

Methods

We developed separate climate‐based distribution models for the northern bettong, its two main resources and a competitor species. We then constructed models for the northern bettong by including climate suitability estimates for the resources and competitor as additional predictor variables to make climate + resource and climate + resource + competition models. We projected these models onto seven future climate scenarios and compared predictions of northern bettong distribution made by these differently structured models, using a ‘global’ metric, the I similarity statistic, to measure overlap in distribution and a ‘local’ metric to identify where predictions differed significantly.

Results

Inclusion of food resource biotic interactions improved model performance. Over moderate climate changes, up to 3.0 °C of warming, the climate‐only model for the northern bettong gave similar predictions of distribution to the more complex models including interactions, with differences only at the margins of predicted distributions. For climate changes beyond 3.0 °C, model predictions diverged significantly. The interactive model predicted less contraction of distribution than the simpler climate‐only model.

Main conclusions

Distribution models that account for interactions with other species, in particular direct resources, improve model predictions in the present‐day climate. For larger climate changes, shifts in distribution of interacting species cause predictions of interactive models to diverge from climate‐only models. Incorporating interactions with other species in SDMs may be needed for long‐term prediction of changes in distribution of species under climate change, particularly for specialized species strongly dependent on a small number of biotic interactions.     

The ecological impact of Phytophthora cinnamomi in the Stirling Range National Park,Western Australia

Abstract An assessment of the impact of the soil-borne pathogenic fungus, Phytophthora cinnamomi (Oomycetes, Peronosporales), on the plant communities of the Stirling Range National Park was carried out between December 1988 and April 1989. A total of 541 plant species were collected, with the Proteaceae and the Myrtaceae the two largest families in the study region. Of the 330 species assessed for susceptibility to P. cinnamomi, 118 (36%) were recorded as having at least some individuals in a population judged to have been killed by the fungus and 33 (10%) were highly sensitive to the pathogen (more than 80% of plants in a population killed). Several families had large numbers of susceptible species, while others were apparently unaffected by the pathogen. Notably, 85% of proteaceous species assessed were rated as susceptible to P. cinnamomi. Proteaceous elements had a mean projective foliage cover of 40% in healthy plant communities, but had a mean cover of only 10% at sites that had a long history of infestation with the fungus. In contrast, some species with low levels of susceptibility to the pathogen, such as some monocotyledons, were found to be more abundant at old-infested sites than at healthy sites. Growth form may also influence susceptibility, with herbaceous perennials, annuals and geophytes assessed in this survey apparently unaffected by the fungus whereas 48% of woody perennials surveyed were susceptible. Changes in the floristic structure of plant communities may influence the composition of associated animal communities. In particular, vertebrate flower visitors may be vulnerable since 59% of the species with vertebrate-pollinated flowers were found to be susceptible to the pathogen. This research highlights the serious ecological impact of P. cinnamomi on native plant communities and suggests that significant components of the flora and associated fauna of the southwest of Western Australia are endangered by this virulent pathogen.     

Long‐term phosphite application maintains species assemblages,richness and structure of plant communities invaded by Phytophthora cinnamomi

The impact of the plant pathogen Phytophthora cinnamomi and the fungicide phosphite on species assemblages, richness, abundance and vegetation structure was quantified at three sites in Kwongkan communities in the Southwest Australian Floristic Region. Healthy and diseased vegetation treated with phosphite over 7–16 years was compared with non‐treated healthy and diseased vegetation. After site differences, disease had the greatest effect on species assemblages, species richness and richness within families. Disease significantly reduced cover in the upper and lower shrub layers and increased sedge and bare ground cover. Seventeen of 21 species assessed from the families Ericaceae, Fabaceae, Myrtaceae and Proteaceae were significantly less abundant in non‐treated diseased vegetation. In diseased habitats, phosphite treatment significantly reduced the loss of shrub cover and reduced bare ground and sedge cover. In multivariate analysis of species assemblages, phosphite‐treated diseased plots grouped more closely with healthy plots. Seven of 17 susceptible species were significantly more abundant in phosphite‐treated diseased plots compared with diseased non‐treated plots. The abundance of seven of 10 Phytophthora‐susceptible species was significantly higher along transects in phosphite‐treated vegetation. Comparison of the floristics of healthy non‐treated with healthy‐treated plots showed no significant differences in species assemblages. Of 21 species assessed, three increased in abundance and only one decreased significantly in phosphite‐treated healthy plots. In three Kwongkan communities of the SWAFR, P. cinnamomi had a profound impact on species assemblages, richness, abundance and vegetation structure. There was no evidence of adverse effects of phosphite treatment on phosphorus‐sensitive species, even after fire. Treatment with phosphite enhanced the survival of key susceptible species and mitigated disease‐mediated changes in vegetation structure. In the absence of alternative methods of control in native communities, phosphite will continue to play an important role in the protection of high priority species and communities at risk of extinction due to P. cinnamomi.     

In vitro Antagonism of Phytophthora cinnamomi and P. citricola by Isolates of Trichoderma spp. and Gliocladium virens

Three fungi, isolated from soil from which Phytophthora was not obtained, were evaluated for antagonism of Phytophthora spp. shown to cause root rot of chestnut in South Australia. Trichoderma hamatum and T. pseudokoningii appeared to inhibit P. cinnamomi by mycoparasitism. with evidence of parallel growth and coiling, and both Trichoderma spp. and Gliocladium virens grew over P. cinnamomi in vitro, preventing further growth of this pathogen. Antibiotics produced by young T. hamatum cultures and G. virens in culture filtrate experiments inhibited growth of P. cinnamomi and P. citricola. with filtrate from 4-day-old cultures of G. virens showing the greatest potential for biocontrol. All three antagonists prevented P. cinnamomi and P. citricola from causing infection symptoms on micropropagated shoots of chestnut cvs Goldsworthy and Buffalo Queen in an in vitro excised shoot bioassay for biocontrol.     

The abundance of ground-dwelling invertebrates in a Victorian forest affected by ‘dieback’(Phytophthora cinnamomi) disease

Abstract Phytophthora cinnamomi (cinnamon fungus) is a pathogenic soil fungus that infects plant communities along the southeastern coast of Australia and the southwestern corner of Western Australia. Infection of native plant communities with P. cinnamomi regularly leads to dramatic changes in both the structural and the floristic characteristics of these communities. This study aimed to assess the effect of P. cinnamomi induced changes in plant community attributes upon the abundance and diversity of invertebrates in an area of open forest in the Brisbane Ranges, Victoria. Pitfall trapping was conducted continuously for 1 week within each season over a 3 year period. Invertebrates were sorted to order level, and abundances were compared between times (season and year) and infection status for taxa with normalized distributions (Coleoptera, Collembola, Dermaptera and ants). Non-parametric comparisons were made for other groups (Aranae, Blattodea, Diptera, Hemiptera, Orthoptera, ant ‘morpho-species’ and unidentified larvae) to assess differences on the basis of infection status. Significant differences on the basis of infection were uncommon and, where identified, elevated abundances were more commonly observed at sites infected by P. cinnamomi. Consistent temporal effects (season and year) were observed in normalized data sets. Abundances both within individual taxa and from pooled counts were generally weakly associated with ground-level habitat features. Overall, the impact of P. cinnamomi on vegetative structure and floristics was not reflected in different abundances of ground-dwelling invertebrates.     

Bioclimatic analysis of the distribution of damage to native plants in Tasmania by Phytophthora cinnamomi

Climatic profiles were generated by the computer program BIOCLIM for three sets of sites in native vegetation in Tasmania: (i) 308 sites at which Phytophthora cinnamomi was isolated from diseased plants Pc+ ive; (ii) 322 sites in healthy plant communities from which P. cinnamomi could not be recovered Pc?ive; and (iii) 801 sites representing the climatic range across Tasmania. A discriminatory analysis comparing the first and third sets indicated that seven of the 16 climatic indices available for analysis were good discriminators of the distribution of damage by P. cinnamomi. The analysis suggests that damage to native vegetation due to P. cinnamomi is unlikely on sites where annual mean temperature does not exceed 7.5°C or annual mean rainfall is < 600 mm. Two maps were produced to indicate those areas of Tasmania that have climates suited to damaging interaction between P. cinnamomi and native vegetation. The first was based on those sites that had annual mean temperature more than 7.5°C and annual mean rainfall less than 600 mm. The second included those sites that matched the values of the Pc+ ive set for all seven good discriminators. The two approaches produced similar results. Areas in which even the most favourable microsites are unlikely to support pathogenic activity by P. cinnamomi constitute less than 20% of the land area. Twelve substantial areas of native vegetation that occur in climates suited to infection by P. cinnamomi. but for which no record of the fungus exists, have been identified.