开发缺氧调控载体用于肾性贫血的基因治疗

目的:开发具有缺氧调控活性的基因治疗载体,其表达可由缺氧选择性诱导,用于肾性贫血的逆转和治疗。方法:合成源于各种缺氧应答基因的缺氧应答元件(HRE)寡核苷酸序列,与CMV启动子连接组合,测定荧光素酶的相对活性以确定缺氧转录活性。结果:在各种缺氧调控载体中,由鼠PGK(mPGK)基因的HRE序列和CMV启动子组合成的缺氧应答启动子显示出14.6倍的高缺氧应答性,而且缺氧诱导的表达水平与完整的CMVI.E启动子在常氧环境下的转录水平相近。结论:3HRE/mPGK/CMV缺氧调控载体对于肾性贫血等一系列疾病实现目的基因的精确调控表达可能非常有用。     

植物嫁接愈合分子机制研究进展

嫁接能显著改良单一品种的产量、品质和抗逆等性状, 已广泛应用于农业生产。促进砧木和接穗在嫁接面的快速愈合有利于提高嫁接效率。目前对嫁接愈合调控机制尚了解不足, 因此短时间内难以进行有效的技术改良。嫁接愈合过程包括先后发生的创伤应激响应、愈伤组织形成、砧穗细胞通讯以及砧穗再生重连等生理事件, 均涉及复杂而交联的激素应答及基因调控模式。近年来, 相关领域的研究成果为综合解析嫁接愈合的调控机制奠定了基础。该文综述了在嫁接愈合过程中发挥核心作用的植物激素及其应答方式, 以及激素依赖或非依赖的基因表达调控模式, 以期为深入揭示嫁接愈合分子机制提供参考。     

表观遗传调控植物响应非生物胁迫的研究进展

植物的生长发育容易受到外界环境变化的影响。非生物胁迫发生时, 表观遗传机制对胁迫应答基因的表达调控发挥了十分重要的作用。近年来, 调控植物非生物胁迫应答的表观遗传机制研究取得了一系列重要进展, 为进一步深入解析植物响应非生物胁迫的分子机制奠定了基础。该文对DNA甲基化修饰、组蛋白修饰、染色质重塑和非编码RNA等主要表观遗传调控方式在植物响应非生物胁迫中的作用进行了简要综述。     

胡杨PeNAC121基因启动子的分离鉴定和胁迫应答模式分析

为了探究NAC转录因子家族成员在胡杨（Populus euphratica）逆境胁迫中的响应和调控机制,利用PCR技术从胡杨中克隆了PeNAC121基因的启动子序列,并采用生物信息学工具对该启动子的结构特征进行了分析,最后利用该启动子驱动GUS报告基因在三倍体毛白杨（Populus tomentosa）中表达,并对获得的转基因植株采用不同胁迫处理后进行了GUS染色和酶活性定量分析。结果表明,克隆获得的PeNAC121基因的启动子长度为1 997 bp（起始密码子ATG上游）,启动序列中除了含有大量的光响应元件,还含有多个与非生物逆境胁迫和激素响应相关的元件,如低温响应元件LTR、干旱响应元件MBS、防卫和胁迫响应元件TC-rich repeats、脱落酸（ABA）响应元件、以及赤霉素（GA）响应元件等。基因的组织表达模式检测结果显示,PeNAC121基因主要在茎中表达,在根和叶中的表达较少。GUS组织化学染色和酶活性检测结果表明,胡杨PeNAC121启动子显著受到NaCl、甘露醇、ABA和4 ℃低温的诱导表达。由上述结果推测PeNAC121基因与胡杨的逆境胁迫应答密切相关,表明该基因的启动子是一个能够应答多种逆境胁迫的诱导型启动子。本研究为阐明PeNAC121基因在胡杨逆境响应和调控中的作用机制提供理论参考。     

鼠疫耶尔森氏菌基因转录调控的研究进展

细菌基因转录调控是多种调控机制中研究最为广泛的一种模式。复杂而精细的基因转录调控网络有助于细菌应答外界环境压力,在病原菌致病与传播中均发挥着关键作用。本文以鼠疫耶尔森氏菌基因转录调控的相关研究进展为基础展开论述,重点阐述细菌的转录调控机制、转录调控的研究策略及鼠疫菌致病与传播中转录调控的作用,以期为深入研究鼠疫菌致病与传播中的基因转录调控分子机制提供新思路。     

长链非编码RNA——抗病毒天然免疫应答的新兴调控因子

长链非编码RNA(long non-coding RNAs, lncRNAs)是长度超过200nt的非编码RNA分子的总称。作为一类重要的基因调控因子,lncRNAs在表观遗传学、转录及转录后等多个水平调控靶基因的表达。近年来的研究表明,许多lncRNAs可被病毒或干扰素(interferon, IFN)诱导表达,并作为调控因子在IFN介导的抗病毒天然免疫应答中调节抗病毒相关基因的表达。本文重点阐述了lncRNAs在IFN介导的抗病毒天然免疫应答中的调控作用,尤其是对干扰素刺激基因(interferon-stimulated genes, ISGs)转录的调控作用,并归纳了lncRNAs、IFN和ISGs形成的调控网络,以期为从事lncRNAs调控IFN介导的抗病毒天然免疫应答机制研究的相关科研人员提供参考。     

人类肿瘤病毒介导缺氧信号致病机制的研究进展

病毒感染与多种肿瘤的发生发展密切相关,病毒入侵宿主细胞后常引发多个关键细胞信号通路的调控紊乱,其中对缺氧信号的调控尤为重要,日益受到关注。本文主要介绍各种常见人类肿瘤病毒如何通过编码毒蛋白篡改缺氧诱导因子(HIF)信号通路,以及在应答缺氧微环境时如何诱发肿瘤发生发展分子机制的研究进展,并概括肿瘤病毒介导HIF信号通路及其对缺氧应激反应的共有模式,提示肿瘤病毒调控缺氧信号诱发癌症的潜在治疗靶点和策略。     

DREB2s转录因子基因的表达调控机制研究进展

DREB2s是植物特有的转录因子,隶属于AP2/EREBP转录因子家族,对干旱、高盐或低温、高温等非生物胁迫应答基因的表达有重要的调控作用。不同植物来源的DREB2在基因结构上有细微差异,对非生物胁迫的响应亦有不同表现。本文阐述了DREB2s的蛋白质结构特征及其对多种非生物胁迫的应答反应,并深入分析了DREB2s转录水平和转录后加工水平的表达调控分子机制的最新研究进展,为理解DREB2s基因功能、分子调控机制及作物抗逆基因工程提供理论依据。     

巴西橡胶树响应低温逆境的生理特征及其调控机制

低温是非传统植胶区巴西橡胶树（Hevea brasiliensis）种植的重要限制因子。低温能够引起巴西橡胶树细胞结构、原生质胶体特性、水分状况、细胞渗透压、光合作用、呼吸作用、物质代谢和保护酶系统等发生一系列改变,最终影响植株的生长发育。目前已从巴西橡胶树中克隆出一些抗寒相关基因,但是巴西橡胶树响应低温胁迫的调控机制仍不十分清楚。本文综述了巴西橡胶树对低温逆境响应的生理特征及其应答调控机制,以期为深入研究巴西橡胶树抗寒机制提供参考。     

秀丽隐杆线虫对不同氧浓度的应答及其调控机制研究进展

不同地理位置的人类生活环境中氧气水平不同,与人体的正常生理功能密切相关。体内氧气的减少会引发多种疾病,如大脑缺血、缺氧导致的脑卒中。近年来利用秀丽隐杆线虫(Caenorhabditis elegans,简称线虫)作为模式生物研究机体对不同氧浓度应答和调控机制取得了长足进展。研究表明,线虫会逃避氧浓度过高或过低的环境,并对周围氧气浓度的变化有适应性,而且其在不同程度低氧环境中存在不同的应答与调控机制。本文综述了近年来线虫对不同氧气浓度的反应和调控机制研究进展。     

Anaerobic granulation technology for wastewater treatment

Anaerobic wastewater treatment using granular sludge reactors is a developing technology, in which granular sludge is the core component. So far, around 900 anaerobic granular sludge units have been operated worldwide. Although intensive research attention has been given to anaerobic granules in the past 20 years, the mechanisms responsible for anaerobic granulation and the strategy of how to expedite substantially the formation of granular sludge have not yet been completely clear. This paper reviews the mode of anaerobic granulation, including the mechanisms and models for anaerobic granulation, major factors influencing anaerobic granulation, characteristics of anaerobic granules, anaerobic granulation in other types of reactors, industrial application of anaerobic granulation technology and neural fuzzy model-based control strategy developed for anaerobic systems. Some approaches for future research are outlined.     

典型有机固废厌氧消化微生物研究现状与发展方向

经过人工富集和驯化的兼性和严格厌氧微生物是厌氧消化工艺的核心。不同厌氧消化体系中存在的问题大多可以通过改变微生物群落的代谢活性来得到有效改善。得益于微生物组学检测技术的快速发展,对厌氧消化系统中微生物多样性的认识获得了极大的拓展,同时在微生物类群间、微生物与环境的互作关系研究方面也取得了一系列新的进展。然而,有机固废厌氧消化系统中,各种微生物以及微生物和物质的相互作用构成了更为复杂的代谢网络,所以目前对这些互作关系的解析尚不完善。本文重点关注了厌氧消化过程中的典型菌群互作关系,阐述了典型有机固废厌氧消化系统中存在的问题及微生物在其中发挥的作用,最后,立足于现有组学技术推动的微生物组研究进展,对未来有机固废厌氧消化系统微生物组的研究提出展望。     

Wireless bioreactor for anaerobic cultivation of bacteria

Anaerobic cultivation methods of bacteria are indispensable in microbiology. One methodology is to cultivate the microbes in anaerobic enclosure with oxygen-adosrbing chemicals. Here, we report an electronic extension of such strategy for facultative anaerobic bacteria. The technique is based a bioreactor with entire operation including turbidity measurement, fluidic mixing, and gas delivery in an anaerobic enclosure. Wireless data transmission is employed and the anaerobic condition is achieved with gas pack. Although the technique is not meant to completely replace the anaerobic chamber for strict anaerobic bacteria, it provides a convenient way to bypass the cumbersome operation in anaerobic chamber for facultative anaerobic bacteria. Such a cultivation strategy is demonstrated with Escherichia coli with different carbon sources and hydrogen as energy source.     

Anaerobic Reactor Design Concepts for the Treatment of Domestic Wastewater

Since the earlier anaerobic treatment systems, the design concepts were improved from classic reactors like septic tanks and anaerobic ponds, to modern high rate reactor configurations like anaerobic filters, UASB, EGSB, fixed film fluidized bed and expanded bed reactors, and others. In this paper, anaerobic reactors are evaluated considering the historical evolution and types of wastewaters. The emphasis is on the potential for application in domestic sewage treatment, particularly in regions with a hot climate. Proper design and operation can result in a high capacity and efficiency of organic matter removal using single anaerobic reactors. Performance comparison of anaerobic treatment systems is presented based mostly on a single but practical parameter, the hydraulic retention time. Combined anaerobic reactor systems as well as combined anaerobic and non-anaerobic systems are also presented.     

厌氧反应器中颗粒污泥的培育及应用研究进展*

厌氧生物处理技术因其具有有机负荷高、污泥产量低、能耗低等优点被广泛应用于各种废水处理中。厌氧颗粒污泥具有沉降性能好、微生物浓度高、有机负荷高等优点,极大地提高了废水处理效率。尤其在处理含高氨氮废水中,厌氧颗粒污泥的形成对反应器的高效生物脱氮至关重要。但到目前为止,厌氧反应器中的颗粒污泥形成及废水处理效果还缺乏系统的认识。鉴于此,总结了厌氧反应器中颗粒污泥的形成机制,分析了影响厌氧反应器中颗粒污泥形成的因素,论述了厌氧反应器中厌氧颗粒污泥生长的模拟,最后介绍了厌氧颗粒污泥在国内外的主流应用。厌氧反应器中颗粒污泥的形成是综合因素影响的结果,对影响厌氧颗粒污泥形成的每个因素都需要认真对待,可为在厌氧反应器中颗粒污泥的培育和应用提供理论指导和技术支撑。     

Involvement of calcium ion in the stimulated shoot elongation of arrowhead tubers under anaerobic conditions

Shoot elongation of arrowhead (Sagittaria pygmaea Miq.) tubers was stimulated in anaerobic conditions. The anaerobic elongation was attributed to stimulation of cell elongation in the middle of the shoots. The anaerobic elongation of the shoots was severely inhibited by ethylene glycol bis(beta-aminoethylether)-N,N,N',N'-tetraacetic acid (EGTA). The EGTA inhibition was completely nullified by exogenous CaCl2, which acts as an enhancer of anaerobic elongation. Moreover, calcium channel blockers, verapamil, diltiazem and LaCl3, inhibited the anaerobic elongation enhanced by CaCl2. These results showed that calcium plays an important role in stimulating the elongation in anaerobic conditions. Incorporation of 45Ca into the shoot tissues was measured to determine the involvement of calcium uptake in anaerobic elongation. Incorporation of 45Ca into the cell sap, which was collected from frozen and thawed shoots after thorough washing with LaCl3, was significantly stimulated in anaerobic conditions. Verapamil and diltiazem prevented the stimulation of 45Ca incorporation in anaerobic conditions. These results suggest that calcium uptake from the medium serves to enhance shoot elongation of arrowhead tubers under anaerobic conditions.     

ARISA方法研究产甲烷菌共存及去除条件下瘤胃真菌多样性变化

摘要：【目的】建立厌氧真菌多样性分析方法,并研究厌氧真菌与产甲烷菌共培养液在传代过程中厌氧真菌的区系变化及共培养液中去除产甲烷菌条件下厌氧真菌多样性的变化。【方法】根据厌氧真菌ITS1序列长度多态性,设计厌氧真菌特异性引物,然后PCR扩增样品中厌氧真菌ITS1序列,在基因分析仪中分析PCR产物序列长度多态性,分析共培养液在传代过程中及共培养液中去除产甲烷菌后厌氧真菌多样性的变化。【结果】对瘤胃厌氧真菌Caecomyces属YC301菌株、Neocallimastix属菌株（YC501与YC502）的ARI     

Pseudomonas aeruginosa anaerobic respiration in biofilms: relationships to cystic fibrosis pathogenesis

Recent data indicate that cystic fibrosis (CF) airway mucus is anaerobic. This suggests that Pseudomonas aeruginosa infection in CF reflects biofilm formation and persistence in an anaerobic environment. P. aeruginosa formed robust anaerobic biofilms, the viability of which requires rhl quorum sensing and nitric oxide (NO) reductase to modulate or prevent accumulation of toxic NO, a byproduct of anaerobic respiration. Proteomic analyses identified an outer membrane protein, OprF, that was upregulated approximately 40-fold under anaerobic versus aerobic conditions. Further, OprF exists in CF mucus, and CF patients raise antisera to OprF. An oprF mutant formed poor anaerobic biofilms, due, in part, to defects in anaerobic respiration. Thus, future investigations of CF pathogenesis and therapy should include a better understanding of anaerobic metabolism and biofilm development by P. aeruginosa.     

A COMPARISON STUDY BETWEEN OXYRASE ANAEROBIC AGAR PLATES AND CONVENTIONAL ANAEROBIC CHAMBER FOR THE ISOLATION AND IDENTIFICATION OF ANAEROBIC BACTERIA FROM CLINICAL INFECTIONS

Misplaced confidence in the broad-spectrum antibiotics, increased resistance among previously predictable anaerobic antibiograms, and the push to maximize productivity of available space and downsizing trends has created a need for a simplified cost-effective, and superior method for the isolation and identification of anaerobic bacteria. In this study, the Oxyrase anaerobic plate system which requires no extraneous apparatus to create an anaerobic environment was compared to an anaerobic chamber in the isolation of anaerobic bacteria from 212 consecutive wound specimens. Brucella blood agar and KVL agar plates were used in this comparison study. RapID ANA II, AP120A, special potency disks, and GLC were used for identification. Of the 212 specimens cultured, 87 yielded anaerobic bacteria comprising 182 strains. Thirty-nine strains failed to grow in the anaerobic chamber but grew on the OxyPlates^(TM). These strains were predominantly Peptostreptococcus species (28%), Eubacterium species (20%), and Propionibacterium species (20%). Fourteen strains failed to grow on the OxyPlates, but grew in the anaerobic chamber. No trend was noted and all organisms in this category grew on the OxyPlates from other specimens. In conclusion, the Oxyrases anaerobic plate system appears to be an excellent alternative to the conventional anaerobic chamber in the isolation and identification of clinically significant anaerobes found in human samples, obviating the need for separate anaerobic-aerobic workstations, expensive anaerobic apparatus, and additional incubator space.