Mango introduction in Florida and the ’haden’ cultivar’s significance to the modern industry

Mango (Mangifera indica L.) introductions to Florida began in 1861 with the importation of ’No. 11’, a polyembryonic, seed-propagated (nucellar) cultivarfrom Cuba. In the 1880s a collection of Cuban mangos was established near Bradenton. One resulting popular cultivar was ’Turpentine’, now widely used as a rootstock. The U. S. Department of Agriculture introduced ’Mulgoba’, an improved cultivarfrom India, in 1889. Other mangos were later brought from India, Vietnam, the Philippines, Thailand, Israel, Australia and Kenya. Related Mangifera species were collected in East Malaysian Borneo in 1990. Inasmuch as the breeding system of Mangifera favors outcrossing, the proximity of numerous genotypes of disparate geographic origin in Florida has made that state a secondary center of diversity for the mango and enabled it to make a unique contribution to the fruit industry.     

Genetic ancestry of participants in the National Children’s Study

Background

The National Children’s Study (NCS) is a prospective epidemiological study in the USA tasked with identifying a nationally representative sample of 100,000 children, and following them from their gestation until they are 21 years of age. The objective of the study is to measure environmental and genetic influences on growth, development, and health. Determination of the ancestry of these NCS participants is important for assessing the diversity of study participants and for examining the effect of ancestry on various health outcomes.

Results

We estimated the genetic ancestry of a convenience sample of 641 parents enrolled at the 7 original NCS Vanguard sites, by analyzing 30,000 markers on exome arrays, using the 1000 Genomes Project superpopulations as reference populations, and compared this with the measures of self-reported ethnicity and race. For 99% of the individuals, self-reported ethnicity and race agreed with the predicted superpopulation. NCS individuals self-reporting as Asian had genetic ancestry of either South Asian or East Asian groups, while those reporting as either Hispanic White or Hispanic Other had similar genetic ancestry. Of the 33 individuals who self-reported as Multiracial or Non-Hispanic Other, 33% matched the South Asian or East Asian groups, while these groups represented only 4.4% of the other reported categories.

Conclusions

Our data suggest that self-reported ethnicity and race have some limitations in accurately capturing Hispanic and South Asian populations. Overall, however, our data indicate that despite the complexity of the US population, individuals know their ancestral origins, and that self-reported ethnicity and race is a reliable indicator of genetic ancestry.     

Palaeolimnological evidence of environmental change over the last 400 years in the Rwenzori Mountains of Uganda

Tropical alpine areas may be highly sensitive to climate change. Yet, because high-resolution palaeoenvironmental studies in these regions are scant, patterns of environmental change over the last few centuries, and linkages with regional changes, remain poorly resolved. This article presents a 400-year palaeolimnological record from Lower Kitandara Lake (3,989 m above m.a.s.l.), located in the Rwenzori Mountains of Uganda, where marked glacial recession has been recorded over much of the twentieth century. An age model is produced for a 57.5 cm sediment core based on ²¹⁰Pb and ¹⁴C dating, suggesting a basal date of approximately 1600 AD. Diatom and organic geochemistry (%TOC, C/N ratios, δ¹³C) analyses are carried out at an approximately decadal resolution. Twentieth-century glacial recession does not appear to have significantly impacted either the diatom or geochemical records. However, large ecological changes have occurred during the past 400 years, particularly shown by the diatom fluxes and geochemical data. Throughout the core, the diatom record reveals only minor changes in assemblage composition, which may be related to the dominance of Staurosira construens var. venter in the lake’s diatom flora, a tychoplanktonic taxon which is highly adaptive to environmental change. Geochemical analyses, however, reveal a marked change at around the end of the eighteenth century, when C/N ratios suggest an increase in the dominance of algal aquatic sources to lacustrine organic matter, concomitant with a stabilisation of catchment inputs and increased diatom productivity, which may have been caused by reduced glacial inputs. The relationship between these changes at Lower Kitandara Lake and wider regional climate change that occurred at the end of the eighteenth century is not well understood, but this study highlights the need for additional research to link drivers of alpine ecosystem change with those operating at low altitudes.     

Do mtDNA Mutations Participate in the Pathogenesis of Sporadic Parkinson’s Disease?

The pathogenesis of sporadic Parkinson’s disease (PD) remains enigmatic. Mitochondrial complex-I defects are known to occur in the substantia nigra (SN) of PD patients and are also debated in some extracerebral tissues. Early sequencing efforts of the mitochondrial DNA (mtDNA) did not reveal specific mutations, but a long lasting discussion was devoted to the issue of randomly distributed low level point mutations, caused by oxidative stress. However, a potential functional impact remained a matter of speculation, since heteroplasmy (mutational load) at any base position analyzed, remained far below the relevant functional threshold. A clearly age-dependent increase of the ‘common mtDNA deletion’ had been demonstrated in most brain regions by several authors since 1992. However, heteroplasmy did hardly exceed 1% of total mtDNA. It became necessary to exploit PCR techniques, which were able to detect any deletion in a few microdissected dopaminergic neurons of the SN. In 2006, two groups published biochemically relevant loads of somatic mtDNA deletions in these neurons. They seem to accumulate to relevant levels in the SN dopaminergic neurons of aged individuals in general, but faster in those developing PD. It is reasonable to assume that this accumulation causes mitochondrial dysfunction of the SN, although it cannot be taken as a final proof for an early pathogenetic role of this dysfunction. Recent studies demonstrate a distribution of deletion breakpoints, which does not differ between PD, aging and classical mitochondrial disorders, suggesting a common, but yet unknown mechanism.     

Coral reef crisis in deep and shallow reefs: 30 years of constancy and change in reefs of Curacao and Bonaire

Coral reefs are thought to be in worldwide decline but available data are practically limited to reefs shallower than 25 m. Zooxanthellate coral communities in deep reefs (30–40 m) are relatively unstudied. Our question is: what is happening in deep reefs in terms of coral cover and coral mortality? We compare changes in species composition, coral mortality, and coral cover at Caribbean (Curacao and Bonaire) deep (30–40 m) and shallow reefs (10–20 m) using long-term (1973–2002) data from permanent photo quadrats. About 20 zooxanthellate coral species are common in the deep-reef communities, dominated by Agaricia sp., with coral cover up to 60%. In contrast with shallow reefs, there is no decrease in coral cover or number of coral colonies in deep reefs over the last 30 years. In deep reefs, non-agaricid species are decreasing but agaricid domination will be interrupted by natural catastrophic mortality such as deep coral bleaching and storms. Temperature is a vastly fluctuating variable in the deep-reef environment with extremely low temperatures possibly related to deep-reef bleaching. An erratum to this article can be found at     

Forest landscape pattern in the KwaZulu–Natal midlands,South Africa: 50 years of change or stasis?

Abstract Understanding patterns and processes of habitat change is essential for managing and conserving forest fragments in anthropogenically altered landscapes. Digitized aerial photographs from 1944 and 1996 were examined for changes to the indigenous forest landscape in the Karkloof‐Balgowan archipelago in KwaZulu–Natal, South Africa. Attributes relating to proximate land‐use, patch shape, isolation and position in the landscape were used to determine putative causes of forest change. The total change in forest area was ?5.7% (forest covered 6739 ha in 1996). This is contrasted with previous reports for the period 1880–1940 that estimated change in total forest area of up to ?80%. Attrition was the predominant process of forest transformation between 1944 and 1996. Despite little overall change in forest area, 786 mostly small (<0.5 ha) forest patches were lost from the landscape, leaving 1277 forest patches in 1996. An increase in patch isolation, but no change in patch cohesion accompanied the changes in forest area. Ignoring patches that were eliminated, 514 patches decreased in area. This was partly a function of patch size, but the conversion of natural grassland to commercial plantation forestry in the matrix also influenced forest decline. Their small size and irregular shape caused forest patches in the region to be vulnerable to edge effects. Core area declined in a negative exponential way with increasing edge width and the total area of edge habitat exceeded that of core habitat at an edge width of only 50 m. Nevertheless, total core area decreased by only 2% (65 ha) between 1944 and 1996 because most of the eliminated patches were small and contained no core area. The large Karkloof forest (1649 ha) is a conservation priority for forest interior species, but the ecological role and biodiversity value of small forest patches should not be overlooked.     

Do Meyer’s Parrots Poicephalus meyeri benefit pollination and seed dispersal of plants in the Okavango Delta,Botswana?

Recent studies of new world parrots repeatedly document, with few exceptions, that parrots are wasteful and destructive predispersal seed predators that are unlikely to contribute towards pollination and seed dispersal. Few detailed studies, however, have assessed the contribution of African parrots to forest ecology by quantifying the potential net benefit of seed and flower predation by parrots for most tree species in their diet. Due to the incidence of pollen on the heads of Meyer’s Parrots when feeding on Leguminosae flowers and the dispersal of viable seeds to the ground during seed predation, we compared destruction rates, when feeding on pods, fruits and flowers, with dispersal rates of viable seeds to the ground and frequency of head contact with reproductive apparatus to estimate net benefit from Meyer’s Parrot feeding activity. Meyer’s Parrots were not implicated in endo‐ or epizoochory, but they dropped uneaten fruit pulp and seeds to the ground during feeding bouts, thus providing ripe, undamaged seeds to secondary seed dispersers. This link with forest recruitment was weak, as all tree species utilized by Meyer’s Parrots either had more significant primary dispersal agents or were primarily wind‐dispersed. In most cases, the negative effect of seed predation outweighed any positive effects in terms of dispersal, whereby almost three times more seeds were consumed or destroyed than were dispersed to the ground. Significantly, only Sclerocarya birrea caffra recorded marginal net dispersal benefit from utilization by Meyer’s Parrots. Due to low relative resource abundance and high destruction rate, feeding activity on Berchemia discolor may be significant enough to influence its spatial distribution and abundance. Utilization of flowers of Kigelia africana and Adansonia digitata by parrots likely had a significant negative impact on pollination. Feeding on Acacia nigrescens flowers, however, was potentially advantageous to their pollination. We conclude that Poicephalus parrots are net consumers of ripe, undamaged seeds and flowers, thus having an overall negative impact on forest recruitment in subtropical Africa.     

Birds and biogeography of Mount Mecula in Mozambique’s Niassa National Reserve

The montane forests of northern Mozambique’s isolated massifs are inhabited by numerous range-restricted and threatened bird species, but until recently were extremely little-known. We report on a first avifaunal survey of the isolated montane habitats of Mt Mecula (1 442 m), Niassa National Reserve, notable as the only currently protected montane area in northern Mozambique. Mount Mecula’s moist forest is small (approximately 136 ha in total) and patchy, and although known botanically to have some montane affinities, was found to support an avifauna more typical of riparian forests of medium to low altitude. The only montane forest species recorded was Lemon Dove Aplopelia larvata. Other montane elements included Vincent’s Bunting Emberiza (capensis) vincenti, one of six species recorded new to the Niassa National Reserve list. Overall, it appears that despite its intermediate location, Mt Mecula does not represent a biogeographical ‘stepping stone’ for montane forest bird species. This probably owes to its remoteness from the Eastern Arc Mountains of Tanzania to the north and the massifs of other parts of northern Mozambique, to the south and west.     

Do life’s three domains mirror the origins of sex?

Conclusions The sexual theory of cell evolution has clear corollaries. All higher life would be initially sexual, and of two types (A- or Eu-karyotes). Relations would be dynamic with alternative unions and dissolution of the union of the two constituent moneric species, even as their viability as free-living species tended to decline in subsequent evolution. Superior bioenergetics meant eukaryotes were retained in multicellular species. However, some a-karyotes would be phylogenetically older than eukaryotes, a point which if verified, would render such biota of fundamental significance.     

Latitudinal shifts in the distribution of exploited fishes in Korean waters during the last 30 years: a consequence of climate change

Sea surface temperatures in Korean waters have increased by approximately 1 °C during the past 40 years, implying possible range shifts of marine fishes and invertebrates. We analyzed spatially explicit, commercial catch data for 12 major fish species collected from 1984 to 2010 in Korean waters to evaluate and project their range shifts based on climate-driven hydrographic changes simulated by a general circulation model under a climate change scenario. There were significant relationships between the mean latitude of the catch distribution and water temperature for seven of the 12 species examined. Our circulation model projected that temperature stratification in the Korea Strait will disappear by 2030, and our empirical relationships predicted that the ranges of five of the fish species examined will shift poleward by 19–71 km from the 2000s to the 2030s. Compared with studies of demersal fishes in the western North Atlantic and the North Sea, our estimated speeds of shift in mean latitude of fishes were, on average, slower by factors of 2.3 and 5.7, respectively. This suggests that the pattern of range shift of marine species can vary regionally, depending on oceanographic and geomorphologic conditions. International cooperative research among fisheries scientists from countries throughout the region, especially Japan and China, is required to more reliably and comprehensively assess and project the range shifts of fish species. This will provide a scientific basis for the development of fishery policies and their adaptation to climate change in the western North Pacific.     

Do Haplogroups H and U Act to Increase the Penetrance of Alzheimer’s Disease?

1. Alzheimer’s disease (AD) is the most common form of dementia in the elderly in which interplay between genes and the environment is supposed to be involved. Mitochondrial DNA (mtDNA) has the only noncoding regions at the displacement loop (D-loop) region that contains two hypervariable segments (HVS-I and HVS-II) with high polymorphism. mtDNA has already been fully sequenced and many subsequent publications have shown polymorphic sites, haplogroups, and haplotypes. Haplogroups could have important implications to understand the association between mutability of the mitochondrial genome and the disease. 2. To assess the relationship between mtDNA haplogroup and AD, we sequenced the mtDNA HVS-I in 30 AD patients and 100 control subjects. We could find that haplogroups H and U are significantly more abundant in AD patients (P = 0.016 for haplogroup H and P = 0.0003 for haplogroup U), Thus, these two haplogroups might act synergistically to increase the penetrance of AD disease.     

Seabed dynamics in a lage coastal embayment: 180 years of morphological change in the outer Thames estuary

This article analyses the morphological history of the outer Thames seabed, covering over 3,000 km² from Aldeburgh (Suffolk), to Southend-on-Sea (Essex) and Margate (Kent). The region has been depicted on bathymetric charts since the sixteenth century, and has been formally charted since the eighteenth century. Charts published since the early 1800s incorporate sufficient grid reference or ground control detail for georectification onto a common coordinate system (British National Grid). The morphological history of the outer seabed was thus reconstructed through the digitisation and interpolation of soundings onto a regular grid (3D surface). The evolution of seabed morphology was examined using transects, bathymetric change maps and spatial statistics. The results show considerable spatial variability in seabed behaviour. Within the central Thames, banks have experienced significant depth changes can be associated with lateral shifts in individual banks. Some of the outer banks in this region exhibit progressive elongation. Shifts in bank position across the Suffolk shoreface appear to be more subtle, and there is evidence here of both onshore and offshore migration. There is no clear evidence of any regionally coherent response to large-scale historical forcing such as sea-level rise.     

Potential impact of climate change on fungal distributions: analysis of 2 years of contrasting weather in the UK

The impact of climate change on fungal growth and spore production is less well documented than for allergenic pollen grains, although similar implications for respiratory tract diseases in humans occur. Fungal spores are commonly described as either “dry” or “wet” according to the type of weather associated with their occurrence in the air. This study examined the distribution of selected fungal spores (Alternaria spp., Cladosporium spp., Didymella spp., Epicoccum spp., Leptosphaeria spp. and rusts) occurring in the West Midlands of UK during 2 years of contrasting weather. Spore specimens were collected using a 7-day volumetric air sampler and then analysed with the aid of light microscopy. Distributions of spores were then studied using normality tests and Mann–Whitney U test, while relationships with meteorological parameters were investigated using Spearman’s rank test and angular-linear correlation for wind direction analysis. Our results showed that so-called wet spores were more sensitive to the weather changes showing statistically significant differences between the 2 years of study, in contrast to “dry” spores. We predict that in following years we will observe accelerated levels in allergenic fungal spore production as well as changes in species diversity. This study could be a starting point to revise the grouping system of fungal spores as either “dry” or “wet” types and their response to climate change.     

Principles of Biofouling Protection in Marine Sponges: A Model for the Design of Novel Biomimetic and Bio-inspired Coatings in the Marine Environment?

The process of biofouling of marine structures and substrates, such as platforms or ship hulls, proceeds in multiple steps. Soon after the formation of an initial conditioning film, formed via the adsorption of organic particles to natural or man-made substrates, a population of different bacterial taxa associates under the formation of a biofilm. These microorganisms communicate through a complex quorum sensing network. Macro-foulers, e.g., barnacles, then settle and form a fouling layer on the marine surfaces, a process that globally has severe impacts both on the economy and on the environment. Since the ban of tributyltin, an efficient replacement of this antifouling compound by next-generation antifouling coatings that are environmentally more acceptable and also showing longer half-lives has not yet been developed. The sponges, as sessile filter-feeder animals, have evolved antifouling strategies to protect themselves against micro- and subsequent macro-biofouling processes. Experimental data are summarized and suggest that coating of the sponge surface with bio-silica contributes to the inhibition of the formation of a conditioning film. A direct adsorption of the surfaces by microorganisms can be impaired through poisoning the organisms with direct-acting secondary metabolites or toxic peptides. In addition, first, compounds from sponges have been identified that interfere with the anti-quorum sensing network. Sponge secondary metabolites acting selectively on diatom colonization have not yet been identified. Finally, it is outlined that direct-acting secondary metabolites inhibiting the growth of macro-fouling animals and those that poison the multidrug resistance pump are available. It is concluded that rational screening programs for inhibitors of the complex and dynamic problem of biofilm production, based on multidisciplinary studies and using sponges as a model, are required in the future.     

Effects of clearance and fragmentation on forest compositional change and recovery after 200 years in western New York

This study investigated the effects of widespread forest clearance and fragmentation on forest compositional change between pre-settlement and the present (ca. 1800–1993) in western New York. Forest compositional turnover metrics were calculated to evaluate whether soil conditions accounted for the forest compositional change, to investigate how forest clearance might have contributed to the change, and to compare with the amount of change noted in other studies that compared the pre-settlement land surveys and the current Forest Inventory and Analysis (FIA) surveys. The results suggested weak relations between the forest compositional change and soil conditions. The amount of change at the county level was positively correlated with the amount of forest clearance by the late 1800s and negatively correlated with the amount of remnant forest in the late 1800s. Furthermore, while the geographic distributions of late-successional taxa in the study area exhibited increased patchiness and decreased contagion, those of early-successional taxa exhibited decreased patchiness and increased contagion. Comparison of taxa’s changed abundances with seven life history characteristics commonly associated with early- and late-successional status showed that taxa’s changed abundances were significantly related to maximum life and shade tolerance. Analysis of different-sized trees in different ages in the FIA survey indicated the possibility of the current forests trending back toward their pre-settlement composition.     

Role of zinc and copper ions in the pathogenetic mechanisms of Alzheimer’s and Parkinson’s diseases

Disbalance of zinc (Zn²⁺) and copper (Cu²⁺) ions in the central nervous system is involved in the pathogenesis of numerous neurodegenerative disorders such as multisystem atrophy, amyotrophic lateral sclerosis, Creutzfeldt-Jakob disease, Wilson-Konovalov disease, Alzheimer’s disease, and Parkinson’s disease. Among these, Alzheimer’s disease (AD) and Parkinson’s disease (PD) are the most frequent age-related neurodegenerative pathologies with disorders in Zn²⁺ and Cu²⁺ homeostasis playing a pivotal role in the mechanisms of pathogenesis. In this review we generalized and systematized current literature data concerning this problem. The interactions of Zn²⁺ and Cu²⁺ with amyloid precursor protein (APP), β-amyloid (Abeta), tau-protein, metallothioneins, and GSK3β are considered, as well as the role of these interactions in the generation of free radicals in AD and PD. Analysis of the literature suggests that the main factors of AD and PD pathogenesis (oxidative stress, structural disorders and aggregation of proteins, mitochondrial dysfunction, energy deficiency) that initiate a cascade of events resulting finally in the dysfunction of neuronal networks are mediated by the disbalance of Zn²⁺ and Cu²⁺.