Skeletal evidence of trauma in African apes, with special reference to the gombe chimpanzees

Incidence of cranial and postcranial skeletal trauma was investigated in samples of chimpanzees (Pan troglodytes troglodytes, P. troglodytes schweinfurthii), lowland gorillas (Gorilla gorilla gorilla), and bonobos (P. paniscus). The larger (adult) samples of chimpanzees (N=127 crania, 92 postcrania) and gorillas (N=136 crania, 62 postcrania) are curated at the Powell-Cotton Museum, Birchington, U.K. The bonobo collection (N=71 crania, 15 postcrania) is housed the Musée Royal de l'Afrique Centrale in Tervuren, Belgium. In addition, data were collected on the small but extremely well-documented skeletal sample from Gombe National Park (N=14 crania, 13 postcrania — including adults and adolescents). Cranial injuries, including healed fractures and bite wounds, were fairly frequent in the museum collection of chimpanzees (5.5% of individuals), but were twice as frequent in gorillas (11.0%). In the Gombe sample an even higher incidence was observed (28.6% of individuals). Bonobos, however, showed the lowest incidence of cranial trauma found among any of the African ape samples (1.4% of individuals). Postcranial trauma, documented most clearly by healed fractures, was seen in 21.7% of the Powell-Cotton chimpanzees, 30.8% of Gombe chimpanzees, 17.7% of gorillas, and in 13.3% of bonobos. Most of these lesions were found in the upper appendage. Nevertheless, highly debilitating healed fractures of the femur were also noted, most frequently and severe in female gorillas. The pattern of injuries suggests serious risks of falling in all free-ranging African apes, but also (in chimpanzees and gorillas) considerable risk from interindividual aggression, especially for males.     

A cercopithecid primate from the late miocene of Molayan,Afghanistan, with remarks onMesopithecus

The first fossil primate discovered in Afghanistan comes from the Late Miocene of Molayan, Khurdkabul Basin. The materials consist of an almost-complete juvenile mandible and an isolated P₃. These two specimens do not significantly differ from thePikermi Mesopithecus pentelicus and are assigned to this species. The primate mandible from the Late Miocene of Maragheh, Iran, which has always been referred by all authors toM. pentelicus, differs from the Pikermi and Molayan materials. It must be assigned to another taxon, probably a new one. The geographic range ofM. pentelicus turns out to be considerably wider in view of the discovery of the species in Molayan, eastern Afghanistan.     

Beyond eugenics: the forgotten scandal of hybridizing humans and apes

This paper examines the available evidence on one of the most radical ideas in the history of eugenics and utopianism. In the mid-1920s, the zoology professor Ilia Ivanov submitted to the Soviet government a project for hybridizing humans and apes by means of artificial insemination. He received substantial financing and organized expeditions to Africa to catch apes for his experiments. His project caused an international sensation. The American Association for the Advancement of Atheism announced its fund-raising campaign to support Ivanov's project but gave it a scandalously racist interpretation. Ivanov's own motivation remained unclear, as did the motivation of those in the Bolshevik government who supported Ivanov until his arrest in 1930. This paper discusses three hypothetical reasons for Ivanov's adventure: first, hybridization between humans and apes, should it be successful, would support the atheist propaganda of the Bolsheviks; second, regardless of the success of hybridization, Ivanov would catch and bring to Russia apes, which were necessary for the rejuvenation programs that were fashionable among the Bolshevik elite; and third, hybridization, should it be successful, would pave the way to the New Socialist Man whose 'construction by scientific means' was the official purpose of the Bolsheviks. Ivanov's ideas were arguably important for the American proponent of reform eugenics, Herman Muller, and for the Soviet anthropologist Boris Porshnev.     

Predicting small‐mammal responses to climatic warming: autecology,geographic range,and the Holocene fossil record

Forecasting how species will respond to climatic change requires knowledge of past community dynamics. Here we use time‐series data from the small‐mammal fossil records of two caves in the Great Basin of the American West to evaluate how contrasting and variable local paleoclimates have shaped small‐mammal abundance dynamics over the last ～7500 years of climatic change. We then predict how species and communities will respond to future scenarios of increased warming and aridity coupled with continued spread of an invasive annual grass (Bromus tectorum). We find that most community‐level responses to climatic change occur in the mammalian abundance structure at both sites; the dominance of the community by individuals from species with a southern geographic affinity increases with climatic warming. This suggests that responses occurred in situ rather than by the immigration of new taxa over this time interval. Despite predictability at the community‐scale, species‐level relationships between abundance and climate are variable and are not necessarily explained by a species' geographic affinity. Species present at both sites, however, exhibit remarkably similar responses to climate at each site, indicating that species autecology (specifically dietary functional group) is important in determining response to climatic warming. Regression‐tree analyses show remarkable concordance between the two cave faunas and highlight the importance of a granivorous dietary strategy in this desert ecosystem. Under projections of increased temperature and decreased precipitation over the next 50 years, our results indicate that granivores should thrive as communities become more dominated by individuals with a southern geographic affinity. Granivores, however, are negatively impacted by the invasion of cheatgrass. The last century of anthropogenic impacts has thus placed granivores at a greater risk of extinction than predicted under climate‐only scenarios.     

Escaping the heat: range shifts of reef coral taxa in coastal Western Australia

One of the most critical challenges facing ecologists today is to understand the changing geographic distribution of species in response to current and predicted global warming. Coastal Western Australia is a natural laboratory in which to assess the effect of climate change on reef coral communities over a temporal scale unavailable to studies conducted solely on modern communities. Reef corals composing Late Pleistocene reef assemblages exposed at five distinct localities along the west Australian coast were censused and the results compared with coral occurrence data published for the modern reefs offshore of each locality. The resulting comparative data set comprises modern and Late Pleistocene reef coral communities occurring over approximately 12° of latitude. For the modern reefs this gradient includes the zone of overlap between the Dampierian and Flindersian Provinces. Modern reef coral communities show a pronounced gradient in coral composition over the latitudinal range encompassed by the study, while the gradient in community composition is not as strong for Pleistocene communities. Tropical‐adapted taxa contracted their ranges north since Late Pleistocene time, emplacing two biogeographic provinces in a region in which a single province had existed previously. Beta diversity values for adjacent communities also reflect this change. Modern reefs show a distinct peak in beta diversity in the middle of the region; the peak is not matched by Pleistocene reefs. Beta diversity is correlated with distance only for comparisons between modern reefs in the north and the fossil assemblages, further supporting change in distribution of the biogeographic provinces in the study area. Coral taxa present in modern communities clearly expanded and contracted their geographic ranges in response to climate change. Those taxa that distinguish Pleistocene from modern reefs are predicted to migrate south in response to future climate change, and potentially persist in ‘temperature refugia’ as tropical reef communities farther north decline.     

Morphological correlates of the first metacarpal proximal articular surface with manipulative capabilities in apes,humans and South African early hominins

This study quantifies the metacarpal 1 (MC 1) proximal articular surface using three-dimensional morphometrics in extant hominids and fossil hominins (SK 84, cf. Paranthropus robustus/Homo erectus and StW 418, Australopithecus africanus) to understand which characteristics of the proximal metacarpal 1 are potentially correlated with human manipulative abilities and if they can be used in a paleoanthropological setting. A principal components (PC) analysis was used to compare MC 1 proximal articular surface shape and ANOVA and Tukey's HSD post-hoc tests were conducted to determine differences among groups. Homo is significantly different from nonhuman hominids having a less radioulnarly and dorsovolarly curved articular surface. All nonhuman hominids have more curved articular surface with Gorilla showing the most curved joint. Moreover, this study highlights the presence of a radially extended surface in Homo that may be related to the greater thumb abduction in human manipulation activities. Both fossils analyzed show a great ape-like MC 1 proximal articular surface which, associated with recent trabecular and archaeological evidence, may indicate that the ability to make/use stone tools preceded the morphological adaptations associated today with such behavior.     

Diversity of Entamoeba spp. in African great apes and humans: an insight from Illumina MiSeq high-throughput sequencing

Understanding the complex Entamoeba communities in the mammalian intestine has been, to date, complicated by the lack of a suitable approach for molecular detection of multiple variants co-occurring in mixed infections. Here, we report on the application of a high throughput sequencing approach based on partial 18S rDNA using the Illumina MiSeq platform. We describe, to our knowledge, for the first time, the Entamoeba communities in humans, free-ranging western lowland gorillas and central chimpanzees living in the Dja Faunal Reserve in Cameroon. We detected 36 Entamoeba haplotypes belonging to six haplotype clusters, containing haplotypes possessing high and low host specificity. Most of the detected haplotypes belonged to commensal Entamoeba, however, the pathogenic species (Entamoeba histolytica and Entamoeba nuttalli) were also detected. We observed that some Entamoeba haplotypes are shared between humans and other hosts, indicating their zoonotic potential. The findings are important not only for understanding the epidemiology of amoebiasis in humans in rural African localities, but also in the context of wild great ape conservation.     

Activation of mammalian Chk1 during DNA replication arrest: a role for Chk1 in the intra-S phase checkpoint monitoring replication origin firing

Checkpoints maintain order and fidelity in the cell cycle by blocking late-occurring events when earlier events are improperly executed. Here we describe evidence for the participation of Chk1 in an intra-S phase checkpoint in mammalian cells. We show that both Chk1 and Chk2 are phosphorylated and activated in a caffeine-sensitive signaling pathway during S phase, but only in response to replication blocks, not during normal S phase progression. Replication block-induced activation of Chk1 and Chk2 occurs normally in ataxia telangiectasia (AT) cells, which are deficient in the S phase response to ionizing radiation (IR). Resumption of synthesis after removal of replication blocks correlates with the inactivation of Chk1 but not Chk2. Using a selective small molecule inhibitor, cells lacking Chk1 function show a progressive change in the global pattern of replication origin firing in the absence of any DNA replication. Thus, Chk1 is apparently necessary for an intra-S phase checkpoint, ensuring that activation of late replication origins is blocked and arrested replication fork integrity is maintained when DNA synthesis is inhibited.     

Nucleotide sequence of the beta-globin genes in gorilla and macaque: The origin of nucleotide polymorphisms in human

Summary Part of the beta-globin genes ofMacaca cynomolgus andGorilla gorilla has been cloned and sequenced. Ten putatively neutral nucleotide polymorphisms have been described at the beta-globin locus in humans. They are associated in seven combinations, which define seven different haplotypes of the beta-globin gene: four major frameworks—1, 2, 3, and 3^*—and three minor frameworks, which we term KI1, KA1, and OR1. The nucleotide sequences of these frameworks are compared with those of homologous sequences in chimpanzee, colobus, macaque, and gorilla. This comparison provides strong evidence that framework 2 was the earliest framework in the human lineage. From framework 2, a rooted parsimonious tree for the six other frameworks is constructed. This phylogenetic tree is discussed in terms of the evolution of nucleotide polymorphisms as well as in terms of genetic affinities between human populations.For each position at which there is base difference in comparing human, gorilla, and chimpanzee beta-globin genes, the phyletic lineage where the corresponding substitution occurred has been identified using the maximum parsimony procedure. The data provide evidence that polymorphisms may represent a significant component of differences between closely related species. If so, nucleotide polymorphisms may strongly bias estimates of small evolutionary distances.     

Mid‐Holocene decline in African buffalos inferred from Bayesian coalescent‐based analyses of microsatellites and mitochondrial DNA

Genetic studies concerned with the demographic history of wildlife species can help elucidate the role of climate change and other forces such as human activity in shaping patterns of divergence and distribution. The African buffalo (Syncerus caffer) declined dramatically during the rinderpest pandemic in the late 1800s, but little is known about the earlier demographic history of the species. We analysed genetic variation at 17 microsatellite loci and a 302‐bp fragment of the mitochondrial DNA control region to infer past demographic changes in buffalo populations from East Africa. Two Bayesian coalescent‐based methods as well as traditional bottleneck tests were applied to infer detailed dynamics in buffalo demographic history. No clear genetic signature of population declines related to the rinderpest pandemic could be detected. However, Bayesian coalescent modelling detected a strong signal of African buffalo population declines in the order of 75–98%, starting in the mid‐Holocene (approximately 3–7000 years ago). The signature of decline was remarkably consistent using two different coalescent‐based methods and two types of molecular markers. Exploratory analyses involving various prior assumptions did not seriously affect the magnitude or timing of the inferred population decline. Climate data show that tropical Africa experienced a pronounced transition to a drier climate approximately 4500 years ago, concurrent with the buffalo decline. We therefore propose that the mid‐Holocene aridification of East Africa caused a major decline in the effective population size of the buffalo, a species reliant on moist savannah habitat for its existence.     

New evidence of hexaploidy in' large' African Barbus with some considerations on the origin of hexaploidy

Three species of' large' African Barbus from the Republic of Guinea (West Africa), were characterized by the chromosome numbers (2N) of 148 (B. bynni occidentalis and B. wurtzi ) and 150 (B. petitjeani Daget, 1962). All these species have a karyotype which corresponds to the evolutionary hexaploid level. The karyotype of B. petitjeani is composed of chromosomes clearly grouped into morphologically homomorphic sextets which may document the origin of hexaploidy via an autopolyploidic event. Present findings extend the known distribution of evolutionary hexaploidy in' large' African Barbus to West Africa and show evidence of the pan-African distribution of this phenomenon.     

Physical attractiveness and reproductive success in humans: evidence from the late 20th century United States

Physical attractiveness has been associated with mating behavior, but its role in reproductive success of contemporary humans has received surprisingly little attention. In the Wisconsin Longitudinal Study (1244 women, 997 men born between 1937 and 1940), we examined whether attractiveness assessed from photographs taken at age 18 years predicted the number of biological children at age 53–56 years. In women, attractiveness predicted higher reproductive success in a nonlinear fashion, so that attractive (second highest quartile) women had 16% and very attractive (highest quartile) women 6% more children than their less attractive counterparts. In men, there was a threshold effect so that men in the lowest attractiveness quartile had 13% fewer children than others who did not differ from each other in the average number of children. These associations were partly but not completely accounted for by attractive participants' increased marriage probability. A linear regression analysis indicated relatively weak directional selection gradient for attractiveness (β=0.06 in women, β=0.07 in men). These findings indicate that physical attractiveness may be associated with reproductive success in humans living in industrialized settings.     

Keeping up with a warming world; assessing the rate of adaptation to climate change

The pivotal question in the debate on the ecological effects of climate change is whether species will be able to adapt fast enough to keep up with their changing environment. If we establish the maximal rate of adaptation, this will set an upper limit to the rate at which temperatures can increase without loss of biodiversity.The rate of adaptation will primarily be set by the rate of microevolution since (i) phenotypic plasticity alone is not sufficient as reaction norms will no longer be adaptive and hence microevolution on the reaction norm is needed, (ii) learning will be favourable to the individual but cannot be passed on to the next generations, (iii) maternal effects may play a role but, as with other forms of phenotypic plasticity, the response of offspring to the maternal cues will no longer be adaptive in a changing environment, and (iv) adaptation via immigration of individuals with genotypes adapted to warmer environments also involves microevolution as these genotypes are better adapted in terms of temperature, but not in terms of, for instance, photoperiod.Long-term studies on wild populations with individually known animals play an essential role in detecting and understanding the temporal trends in life-history traits, and to estimate the heritability of, and selection pressures on, life-history traits. However, additional measurements on other trophic levels and on the mechanisms underlying phenotypic plasticity are needed to predict the rate of microevolution, especially under changing conditions.Using this knowledge on heritability of, and selection on, life-history traits, in combination with climate scenarios, we will be able to predict the rate of adaptation for different climate scenarios. The final step is to use ecoevolutionary dynamical models to make the link to population viability and from there to biodiversity loss for those scenarios where the rate of adaptation is insufficient.     

A critique of the chronometric evidence for hominid fossils: I. Africa and the Near East 500-50 ka

The chronometric dating evidence for all hominid fossils from Africa and the Near East that have previously been dated to 500-50 ka is critically assessed using the concept of chronometric hygiene, and these dates are revised using Bayesian statistical analyses where possible. Sixteen relevant hominid sites lacking chronometric evidence are briefly discussed. Chronometric evidence from 37 sites is assessed in detail. The dates for many hominid fossils are poorly constrained, with a number dated by comparisons of faunal assemblages-a method that does not have good chronological resolution for much of the last million years. For sites with stratigraphic sequences of dates, it is generally possible to refine the dating, but in some cases, the revised chronology is less precise than previous chronologies. Fossils over 200 ka in age tend to be poorly dated, but for the last 200 kyr, dating is better due to the availability of electron-spin-resonance and thermoluminescence dating. Consideration of the chronologies favored by the proponents of the out-of-Africa and multiregional hypotheses of human evolution shows their selectivity. The chronological assessment of the fossils here is compatible with either hypothesis. If evolutionary schemes that do not rely on the morphology of the hominid fossils to decide the sequence of fossils are to be built, then further dating is required, alongside full publication of existing dates.     

Identification of ochratoxin A producing Aspergillus carbonarius and A. niger clade isolated from grapes using the loop‐mediated isothermal amplification (LAMP) reaction

Aims

To develop two assays based on the loop‐mediated isothermal amplification (LAMP) of DNA for the quick and specific identification of Aspergillus carbonarius and ochratoxigenic strains of the Aspergillus niger clade isolated from grapes.

Methods and Results

Two sets of primers were designed based on the polyketide synthase genes involved or putatively involved in ochratoxin A (OTA) biosynthesis in A. carbonarius and A. niger clade. Hydroxynaphthol blue was used as indirect method to indicate DNA amplification. The limit of detection of both assays was comparable to that of a PCR reaction. Specificities of the reactions were tested using DNA from different black aspergilli isolated from grapes. The two LAMP assays were then used to identify A. carbonarius and ochratoxigenic A. niger and A. awamori grown in pure cultures without a prior DNA extraction.

Conclusions

The two LAMP assays permitted to quickly and specifically identify DNA from OTA‐producing black aspergilli, as well as isolates grown in pure culture.

Significance and Impact of the Study

Monitoring vineyards for the presence of OTA‐producing strains is part of the measures to minimize the occurrence of OTA in grape products. The two LAMP assays developed here could be potentially used to speed the screening process of vineyards for the presence of OTA‐producing black aspergilli.     

The nature and origin of the crustacean zooplankton of Sahelian Africa,with a note on the Limnomedusa

The zooplankton of the major Sahel river basins Nile, Shari (Chad), Niger, and Senegal, is different from that found in the Sahara and in Equatorial Africa. Similarities and differences between the individual basins are numerous as well. Many species are shared by the Nile and Lake Chad, by Lake Chad and the Niger (plus Senegal), or occur in all four basins, or are restricted (endemic) to only one basin.These patterns are identical to patterns found in fish, molluscs, and macrophytes and show that crustacean zooplankton obeys the same laws of dispersal as these groups, in spite of its apparent preadaptation to passive dispersal.The patterns can be explained by the climatic fluctuations of the Upper Pleistocene and,Holocene. Following a general dry period over Africa between 20 000 and 13 000 BP, high river and lake levels prevailed between 12 500 and 8 400 BP. This was the period of maximum faunal interchange between all basins, and even with the Zaire basin. After a regression (8 000–7 000 BP), wetter conditions returned around 6 000 BP, but the Sahel itself remained dry, although its rivers and lakes, fed by waters of southern origin, showed higher levels than today. They flooded large areas of the southern Sahara, permitting aquatic animals and plants to reach the Adrar of Mauretania, the Tibesti, and the Ennedi mountains.Since 3 000 BP, present day conditions developed. This last period is characterized by species extinctions, as exemplified by the droughts in Lake Chad in historical times, and in spite of the tremendous diversity still extant here today. Between 6 000 BP and the present, however, very little speciation took place, and faunal exchange between basins was very limited.     

Mountain Weather and Climate: A General Overview and a Focus on Climatic Change in the Alps

Meteorological and climatic processes in mountain regions play a key role in many environmental systems, in particular the quantity and quality of water that influences both aquatic ecosystems and economic systems often far beyond the boundaries of the mountains themselves. This paper will provide a general overview of some of the particular characteristics of mountain weather and climate, to highlight some of the unique atmospheric features that are associated with regions of complex topography. The second part of the paper will focus upon characteristics of climate and climatic change in the European Alps, a region with a wealth of high quality data that allows an assessment on how climate and dependent environmental systems have evolved in the course of the 20th century and how alpine climate may undergo further changes to “global warming” in the 21st century, as the atmosphere responds to increasing levels of greenhouse gases that are expected in coming decades.     

Orbital forcing and the spread of C4 grasses in the late Neogene: stable isotope evidence from South African speleothems

Reconstructing Plio-Pleistocene African paleoenvironments is important for models of early hominin evolution, but is often hampered by low-resolution or discontinuous climatic data. Here, we present high-resolution stable oxygen and carbon isotope time series data from two flowstones (secondary cave deposits) from the South African hominin-bearing Makapansgat Valley. The age of the older of the two flowstones (Collapsed Cone) is constrained by magnetostratigraphy to approximately 4-5 Ma; the younger flowstone (Buffalo Cave) grew between 2.0-1.5 Ma, as determined by magnetostratigraphy and orbital tuning of the isotopic data. The carbon isotope data is used as a proxy for the proportion of C(4) grasses in the local environment and the oxygen isotope data reflects monsoon rainfall intensity. The carbon isotope evidence indicates that in the late Miocene/early Pliocene, the local environment was dominated by C(3) vegetation, whereas, in the Plio-Pleistocene, it was composed of a mixture of C(3) and C(4) vegetation. This suggests that C(4) grasses became a significant part of the Makapansgat Valley ecosystem at approximately 4-5 Ma, towards the end of the late Neogene global expansion of C(4) grasses. After this initial expansion, South Africa experienced further fluctuations in the proportion of C(3) and C(4) vegetation during the Plio-Pleistocene, in response to regional and global climatic changes. Most notably, the Buffalo Cave flowstone provides evidence for C(4) grass expansion at ca. 1.7 Ma that we suggest was a response to African aridity caused by the onset of the Walker Circulation in the Pacific Ocean at this time.