Formation of N epsilon-(gamma-glutamyl)-lysine isodipeptide in Chinese-hamster ovary cells.

N epsilon-(gamma-Glutamyl)-lysine isodipeptide was detected in a protein-free fraction of Chinese-hamster ovary cells and their culture fluid by using radioactive lysine as a tracer. The identity of the isodipeptide was established by its separation on ion-exchange chromatography, analysis by h.p.l.c. after derivatization, recovery of lysine after acidic hydrolysis or after cleavage by a specific enzyme, namely gamma-glutamylamine cyclotransferase. The amount of isodipeptide was raised (460 pmol/10(7) cells and 61 pmol/ml of culture fluid were observed as highest values) as the cell density increased. Effects of inhibitors of intracellular protein degradation have shown that the isodipeptide derives from cross-linking N epsilon-(gamma-glutamyl)-lysine bonds formed by tissue transglutaminase. Estimated half-life values of cross-linked proteins were about 3 h. gamma-Glutamylamine cyclotransferase, which may split the isodipeptide formed during the continuous turnover of cross-linked proteins, was also found in Chinese-hamster ovary cells. Isodipeptide may have been accumulated when either its generated amount is beyond the capacity of gamma-glutamylamine cyclotransferase or it is generated in cell compartments where this enzyme is not present.     

Hydrolysis of the isopeptide epsilon-(gamma-glutamyl)-lysine by destabilase from the medicinal leech Hirudo medicinalis

Using amino acid analysis, the ability of destabilize to hydrolyze the epsilon-(gamma-Glu)-Lys isopeptide bond was demonstrated. Incubation of the epsilon-(gamma-Glu)-Lys isopeptide with the enzyme was accompanied by a decrease of the amount of the isopeptide and an increase of equimolar amounts of lysine and glutamic acid. Complete hydrolysis of the isopeptide was observed after 96 hour incubation with destabilize. It was supposed that the isopeptide is a less specific substrate for destabilize compared to L-gamma-Glu-pNA.     

Age-dependent accumulation of N epsilon-(carboxymethyl)lysine and N epsilon-(carboxymethyl)hydroxylysine in human skin collagen

N epsilon-(Carboxymethyl)lysine (CML) is formed on oxidative cleavage of carbohydrate adducts to lysine residues in glycated proteins in vitro [Ahmed et al. (1988) J. Biol. Chem. 263, 8816-8821; Dunn et al. (1990) Biochemistry 29, 10964-10970]. We have shown that, in human lens proteins in vivo, the concentration of fructose-lysine (FL), the Amadori adduct of glucose to lysine, is constant with age, while the concentration of the oxidation product, CML, increases significantly with age [Dunn et al. (1989) Biochemistry 28, 9464-9468]. In this work we extend our studies to the analysis of human skin collagen. The extent of glycation of insoluble skin collagen was greater than that of lens proteins (4-6 mmol of FL/mol of lysine in collagen versus 1-2 mmol of FL/mol of lysine in lens proteins), consistent with the lower concentration of glucose in lens, compared to plasma. In contrast to lens, there was a slight but significant age-dependent increase in glycation of skin collagen, 33% between ages 20 and 80. As in lens protein, CML, present at only trace levels in neonatal collagen, increased significantly with age, although the amount of CML in collagen at 80 years of age, approximately 1.5 mmol of CML/mol of lysine, was less than that found in lens protein, approximately 7 mmol of CML/mol of lysine. The concentration of N epsilon-(carboxymethyl)hydroxylysine (CMhL), the product of oxidation of glycated hydroxylysine, also increased with age in collagen, in parallel with the increase in CML, from trace levels at infancy to approximately 5 mmol of CMhL/mol of hydroxylysine at age 80.(ABSTRACT TRUNCATED AT 250 WORDS)     

Hypochlorous acid generates N epsilon-(carboxymethyl)lysine from Amadori products

Since the accumulation of N^ε-(carboxymethyl)lysine (CML), a major antigenic advanced glycation end product, is implicated in tissue disorders in hyperglycemia and inflammation, the identification of the pathway of CML formation will provide important information regarding the development of potential therapeutic strategies for these complications. The present study was designed to measure the effect of hypochlorous acid (HOCl) on CML formation from Amadori products. The incubation of glycated human serum albumin (glycated-HSA), a model of Amadori products, with HOCl led to CML formation, and an increasing HOCl concentration and decreasing pH, which mimics the formation of these products in inflammatory lesions. CML formation was also observed when glycated-HSA was incubated with activated neutrophils, and was completely inhibited in the presence of an HOCl scavenger. These data demonstrated that HOCl-mediated CML formation from Amadori products plays a role in CML formation and tissue damage at sites of inflammation.     

Isolation of peptides containing citrulline and the cross-link, epsilon-(gamma-glutamyl)lysine, from hair medulla protein.

The epsilon-(gamma-glutamyl)lysine cross-link has been unequivocally localized in the citrulline-containing protein of hair medulla tissue. This was achieved by the isolation of cross-linked peptides that contain citrulline. The peptides were purified by molecular sieving, cation-exchange and paper chromatography and paper electrophoresis and their amino acid compositions are reported. They were detected by analyzing a large number obtained from a tryptic digest of thermolytic peptides of the medulla protein. There is no evidence at present as to whether the cross-link is in fact inter- or intrachain, or both.     

Hydrothermal vent gastropods from the same family (Provannidae) harbour epsilon- and gamma-proteobacterial endosymbionts

The discovery of new hydrothermal vent systems in the back-arc basins of the Western Pacific revealed chemosynthesis-based faunal communities distinct from those of other vents. These vents are dominated by two related gastropods (Alviniconcha spp. and Ifremeria nautilei) that harbour symbiotic bacteria in their gills. We used comparative 16S ribosomal RNA (rRNA) gene sequencing and in situ hybridization with rRNA-targeted probes to characterize the bacterial symbionts of Alviniconcha sp. and I. nautilei from the Manus Basin in the Western Pacific. The analyses revealed that these two gastropod species, although affiliated with the same family, harbour phylogenetically distant chemosymbionts, suggesting independent origins of these endosymbioses. The I. nautilei endosymbiont clusters with sulfur-oxidizing bacteria within the gamma-Proteobacteria, as is the case for all previously characterized endosymbionts from a wide diversity of host taxa harbouring thioautotrophic prokaryotes. In contrast, the Alviniconcha endosymbiont is affiliated with sulfur-oxidizing bacteria within the epsilon-Proteobacteria. These results show that bacteria from the epsilon-Proteobacteria are also capable of forming endosymbiotic associations with marine invertebrates from chemosynthetic environments. More generally, the endosymbiotic lifestyle is now shown to be distributed throughout all recognized classes of the Proteobacteria.     

Formation of an RNase A derivative containing an aminosuccinyl residue in place of asparagine 67

At acidic pH, Asp67 and beta-Asp67 (beta-Asp: isoaspartic acid residue) derivatives of RNase A, obtained by selective deamidation of the parent enzyme, spontaneously produces a new derivative containing an aminosuccinyl residue (Asu). The overall secondary structure of the protein chain does not change as a consequence of this substitution, while the catalytic activity on RNA is reduced to about 25%. The pH dependence of the first-order rate constants for the Asu formation has a bell-shaped profile, the maximum being close to the pK(a) of the aspartic acid side chains. Moreover, the values of the rate constants are of the same magnitude of those measured for Asp-containing peptides whose sequence mimics the Asu formation site of the enzyme. This feature indicates that Asp67 and beta-Asp67 residues in the deamidated RNase A derivatives are sited in a region flexible enough to permit the cyclization of the carboxylic side chain to succinimide ring. These results are discussed at the light on to the three-dimensional structure and the thermodynamic stability of the aspartic acid derivatives of RNase A.     

Preliminary crystallographic data for cross-linked (lysine7-lysine41)-ribonuclease A

A cross-linked derivative of ribonuclease A, N^ε,N^ε′-(2,4-dinitrophenylene-1,5)-(lysine⁷-lysine⁴¹)-RNase A, has been crystallized by dialysis against 30% ($\text{v}\text{v}$) ethanol/water mixtures buffered at high pH. Single crystals belong to the orthorhombic space group P2₁2₁2₁, $\text{a = 37.2}\text{A}\text{?}\text{, b = 41.2}\text{A}\text{?}\text{, b = 41.2}\text{A}\text{?}$, with one molecule in the Crystallographic asymmetric unit.     

Presence of the epsilon-(gamma-glutamic)lysine crosslink in cellular proteins.

The epsilon-(gamma-glutamic)lysine bond is a covalent interaction which has been found to crosslink polypeptide chains of a number of extracellular proteins. Among known covalent bonds crosslinking protein chains, it is unique in that it is formed directly by enzymatic catalysis, a property which may also endow Glu-Lys crosslink formation with important intracellular functions. We found glutamic-lysine bonds to be present in the procaryote, Escherichia coli, in primitive eucaryotes such as the slime mold, Physarum polycephalum, and the ciliate, Paramecium aurelia, and in muscle cells of a bird and a mammal. Our data show that, although Glu-Lys bonds occur in low concentrations in cellular proteins, they are nevertheless widely distributed. Evidence is also presented indicating that the low levels of the Glu-Lys bonds we measure in the proteins of various cells types are not artifacts of our analytical procedures.     

A gorgonopsian from the Wutonggou Formation (Changhsingian,Permian) of Turpan Basin,Xinjiang, China

Gorgonopsians were widely distributed during the Permian, and went extinct by the end of Permian. However, their fossil localities in the North Hemisphere are concentrated in the eastern European portion of Russia, except for one possible canine from the North China. A specimen from the Wutonggou Formation of Turpan Basin, Xinjiang, China, dated ～253.3 Ma, is identified as a gorgonopsian based on dental features. This discovery shows that the gorgonopsians survived in northern warm temperate zone about ～253.3 Ma, contemporaneous with the latest records of Russia and South Africa. This specimen may represent one of the latest records of gorgonopsians.     

A Basal Sauropodomorph (Dinosauria: Saurischia) from the Ischigualasto Formation (Triassic,Carnian) and the Early Evolution of Sauropodomorpha

Background

The earliest dinosaurs are from the early Late Triassic (Carnian) of South America. By the Carnian the main clades Saurischia and Ornithischia were already established, and the presence of the most primitive known sauropodomorph Saturnalia suggests also that Saurischia had already diverged into Theropoda and Sauropodomorpha. Knowledge of Carnian sauropodomorphs has been restricted to this single species.

Methodology/Principal Findings

We describe a new small sauropodomorph dinosaur from the Ischigualsto Formation (Carnian) in northwest Argentina, Panphagia protos gen. et sp. nov., on the basis of a partial skeleton. The genus and species are characterized by an anteroposteriorly elongated fossa on the base of the anteroventral process of the nasal; wide lateral flange on the quadrate with a large foramen; deep groove on the lateral surface of the lower jaw surrounded by prominent dorsal and ventral ridges; bifurcated posteroventral process of the dentary; long retroarticular process transversally wider than the articular area for the quadrate; oval scars on the lateral surface of the posterior border of the centra of cervical vertebrae; distinct prominences on the neural arc of the anterior cervical vertebra; distal end of the scapular blade nearly three times wider than the neck; scapular blade with an expanded posterodistal corner; and medial lamina of brevis fossa twice as wide as the iliac spine.

Conclusions/Significance

We regard Panphagia as the most basal sauropodomorph, which shares the following apomorphies with Saturnalia and more derived sauropodomorphs: basally constricted crowns; lanceolate crowns; teeth of the anterior quarter of the dentary higher than the others; and short posterolateral flange of distal tibia. The presence of Panphagia at the base of the early Carnian Ischigualasto Formation suggests an earlier origin of Sauropodomorpha during the Middle Triassic.     

The conformation of the epsilon- and gamma-subunits within the Escherichia coli F(1) ATPase

F(1) is the water-soluble portion of the ubiquitous F(1)F(0) ATP synthase. Its structure includes three alpha- and three beta-subunits, arranged as a hexameric disc, plus a gamma-subunit that penetrates the center of the disc akin to an axle. Recently Hausrath et al. (Hausrath, A. C., Grüber, G., Matthews, B. W., and Capaldi, R. A. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 13697-13702) obtained an electron density map of E. coli F(1) at 4.4-A resolution in which the coiled-coil alpha-helices of the gamma-subunit could be seen to extend 45 A from the base of the alpha(3)beta(3) hexamer. Subsequently the structure of a truncated form of the E. coli gamma-subunit in complex with epsilon has been described (Rodgers, A. J. W., and Wilce, M. C. J. (2000) Nat. Struct. Biol. 7, 1051-1054). In the present study the 4.4-A resolution electron density map of E. coli F(1) is re-evaluated in light of the newly available data on the gamma- and epsilon-subunits. It is shown that the map of the F(1) complex is consistent with the structure of the isolated subunits. When E. coli F(1) is compared with that from beef heart, the structures of the E. coli gamma- and epsilon-subunits are seen to be generally similar to their counterparts in the bovine enzyme but to undergo major shifts in position. In particular, the two long, coiled-coil alpha-helices that lie along the axis of F(1) both unwind and rotate. Also the epsilon-subunit rotates around the axis by 81 degrees and undergoes a net translation of about 23 A. It is argued that these large-scale changes in conformation reflect distinct functional states that occur during the rotation of the gamma-subunit within the alpha(3)beta(3) hexamer.     

Isolation and identification of the predominant lactobacilli in elephant grass (Pennisetum purpureum) and Guatemala grass (Trypsacum laxum) silage from Bambui,Cameroon

Summary The predominant lactobacilli in silages made from elephant grass and Guatemala grass were strains ofLactobacillus casei. These were characterized by traditional taxonomic methods.

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Resumen Los lactobacilos predominantes en ensilados de pasto elefante y pasto guatemala eran cepas deLactobacilus casei. Estas cepas se caracterizaron mediante métodos taxonómicos tradicionales.

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Résumé Les lactobacilles prédominant dans les ensilages d'herbe à éléphant et d'herbe du Guatemala sont des souches deLactobacillus casei. Ces souches ont été caractérisées par les méthods taxonomiques traditionelles.

     

A new species of Baragwanathia from the Sextant Formation (Emsian) Northern Ontario, Canada

Baragwanathia abitibiensis is described from the Sextant Formation of northern Ontario, Canada (middle to upper Kmsian age). The plant remains are primarily compressions in which flattened xylem strands, epidermis with stomata, and cuticle are well preserved. Pyrite permineralization of the leaves was Ibiuid in one specimen. Comparison with B. longijolia Lang & Cookson indicates remarkable morphological similarities and probable anatomical similarities although details of the structure of the epidermis and cuticle are lacking in B. longijolia. No information is available on the outline of the cauline xylem strand in B. abitibiensis nor on the form and position of the sporangia it bore. Comparisons are also made to species of Drepanophycus. The age of/?, longijolia and the Baragwanathia Flora, is discussed with particular reference to the putative dating of some specimens as Silurian. The morphological and anatomical complexity of Baragwanathia is at a level of advancement typical of Early to Middle Devonian lycopods. There is no evidence of precursors to the genus associated with the fragments of land vascular plants in the well-dated Silurian sediments of Wales, Czechoslovakia, New York State, or Podolia.     

Relationship of (8-lysine) vasopressin receptor transition to receptor functional properties in a pig kidney cell line (LLC-PK1)

In intact LLC-PK1 cells, occupancy of vasopressin receptors (Roy, C., and Ausiello, D. A. (1981) J. Biol. Chem. 256, 3415-3522) correlated with cell cAMP production. This relationship was observed as a function of hormone dose, incubation time, and changes in receptor affinity. However, the rate of cAMP production diminished with time in intact cells exposed to high hormone concentrations, even in the presence of a phosphodiesterase inhibitor. A rapid desensitization of adenylate cyclase activity was observed in minutes upon treatment of intact cells with high hormonal concentrations. Desensitization was dose- and time-dependent. Hypertonic sodium chloride, which increased hormonal binding and cell cAMP production, prevented desensitization. The acute decrease in hormone-stimulated adenylate cyclase activity correlated with increased occupancy of low affinity binding sites. EDTA-suspended cells, which have a homogeneous population of binding sites, did not demonstrate desensitization. A proposal is made as to the consequences of this phenomenon at physiological concentrations of vasopressin.     

A surprisingly derived hydrometrid (Hemiptera,Gerromorpha) from the Crato Formation,Early Cretaceous of Brazil

In the present paper, we review the fossil record of the Hydrometridae (Hemiptera, Gerromorpha) and present a new species from the Early Cretaceous Crato Formation of Northeastern Brazil, Christometra paradoxa gen. et sp. nov. This species is based on a new specimen (a female), as well as a previously figured one (a male), providing a rare case of preservation of sexually dimorphic features in the fossil record. This is the third species coming from this deposit, which is Aptian-Albian in age and the oldest deposit to have yielded hydrometrids so far. Only five other Mesozoic species are known, being slightly younger in age (Cenomanian). So far, phylogenetic analyses have recovered Cretaceous hydrometrids as basal relative to Cenozoic genera but, Christometra paradoxa exhibits several advanced characteristics that unite it in a clade together with the extant genera Hydrometra and Bacillometroides, in a more derived position than any previously known fossil hydrometrid.

The present publication is registered in the Official Register of Zoological Nomenclature (Zoobank), under the registration number http://zoobank.org/urn:lsid:zoobank.org:pub:3CFA88AB-3CBC-4CCC-8196-698ECC863947. The registration number for the nomenclatural act of the genus is http://zoobank.org/urn:lsid:zoobank.org:act:84744426-1259-4864-8E3F-E43E0DAB2021, and that of the species is http://zoobank.org/urn:lsid:zoobank.org:act:23700AB2-F7AD-4F50-A5E7-CB28868079B2.     

A new ammonoid fauna from the Carnian (Upper Triassic) Kasimlar Formation of the Taurus Mountains (Anatolia,Turkey)

We describe a new ammonoid fauna from the Taurus Mountains of southern Turkey. The Carnian ammonoid fauna from A?a?iyaylabel is presented for the first time. Ammonoids were obtained from limestone to marl beds of an approximately 35‐m‐thick section, which presents the rare opportunity to investigate ammonoid faunas across the Lower–Upper Carnian boundary. Intense sampling near the village of A?a?iyaylabel led to the recognition of a new Lower Carnian (Julian 2) to Upper Carnian (Tuvalian 1) ammonoid fauna from the Kasimlar Formation. The genus Kasimlarceltites gen. nov. is reported for the first time from the Taurus Mountains, which represents the main faunal element and occurs as huge mass occurrence (n ? 1 million). Kasimlarceltites krystyni gen. et sp. nov., Klipsteinia disciformis sp. nov. and Anasirenites crassicrenulatus sp. nov. occur within the Lower Carnian Carbonate member (Units A–B) of the Kasimlar Formation from the Taurus Platform Units. Ammonoids described from the marls of the Tuvalian Marlstone member were deposited during a major, Tethyan‐wide climate crisis – the so‐called Carnian crisis – characterized by a demise of carbonate platforms. Based on the biostratigraphic relevance of certain ammonoid taxa described herein, the age of the analysed parts of the Kasimlar Formation is Julian 2 to Tuvalian 1. The discovery of the new ammonoid assemblages from A?a?iyaylabel substantiates the significance of Upper Triassic faunas within the Taurus Mountains and facilitates the correlation with faunal assemblages from other regions in the Tethyan Realm. The ammonoid fauna and facies indicate a general deepening from open‐platform margins, over deeper shelf settings down to an open marine‐influenced basinal environment. The tentative habitat for Kasimlarceltites gen. nov. is a shallow platform environment to upper mid‐ramp.     

Synthesis of N epsilon-(7-diethylaminocoumarin-3-carboxyl)- and N epsilon-(7-methoxycoumarin-3-carboxyl)-L-Fmoc lysine as tools for protease cleavage detection by fluorescence.

Two coumarin-labelled lysines were conveniently prepared as a fluorescence resonance energy transfer (FRET) pair for peptide cleavage detection. 7-Methoxy and 7-diethylamino coumarin-3-carboxylic acids were synthesized according to a modification of known procedures. Labelling at lysine was achieved in solution via the active N-hydroxysuccinimide ester of the carboxylic acid coumarin derivatives to give the target compounds in good yield. Subsequently, these modified amino acids were used in solid phase peptide synthesis (SPPS), and their potential utility in an extracellular matrix metalloprotease (MMP-1) activity measurement via FRET and/or quenching studies was demonstrated.