A review of the grassflies of the genus <Emphasis Type="Italic">Meromyza</Emphasis> Meigen, 1830 (Diptera,Chloropidae) of the Palaearctic fauna,with a key to the species,analysis of synonymy,host specialization,and geographical distribution: Part 1

The first part of the paper includes a key to 72 Palaearctic and Oriental species of the genus Meromyza.     

Two new palaearctic species of the genus <Emphasis Type="Italic">Scoliophthalmus</Emphasis> Becker, 1903 (Diptera,Chloropidae) with a key to the species occurring in the Palaearctic Region

Two new species of the genus Scoliophthalmus Becker, 1903 (Diptera, Chloropidae) are described: S. miscanthi sp. n. from southern Primorskii Territory (Russia) and S. gussakovskii sp. n. from southern Tajikistan. The genus is recorded for Russia for the first time. The species of Scoliophthalmus occur only in the southern areas of the Palaearctic Region. A key to eight species occurring in the Palaearctic Region is given.     

Contributions to the knowledge of European species of the genus <Emphasis Type="Italic">Meromyza</Emphasis> (Diptera,Chloropidae)

Meromyza filippovi sp. n. is described from the European part of Turkey [TURKEY: Sariyer, Buyukdere (41.163852°N, 29.042238°E), 19.VIII.1938, coll. Zhenzhurist (= N.N. Filippov)]. The holotype of the new species is deposited at the Zoological Museum of Moscow State University.     

Russian fauna of the genus <Emphasis Type="Italic">Chrysotus</Emphasis> (Diptera,Dolichopodidae): Part 1. <Emphasis Type="Italic">Chrysotus cilipes</Emphasis> Meigen and <Emphasis Type="Italic">Ch. laesus</Emphasis> Wied. species-Group

Based on examination of the collections of the Zoological Institute of the Russian Academy of Sciences and Voronezh State University, a list of species of the group Chrysotus cilipes Meigen and Ch. laesus Wied. was compiled for the fauna of Russia, including 8 species: Chrysotus amurensis Negrobov, Ch. caerulescens Negrobov, Ch. cilipes Meigen, Ch. laesus (Wiedemann), Ch. parilis Parent, Ch. pennatus Lichtwardt, Ch. pseudocilipes Hollis, and Ch. suavis Loew.     

Evolution of postgonites in frit flies (Diptera,Chloropidae, <Emphasis Type="Italic">Meromyza</Emphasis>)

Evolutionary trends of the morphometric characteristics of postgonites (structures important for copulation) and variability of the mtDNA COI gene region were analyzed for 27 species of the genus Meromyza Mg. The total area, the area and height of the protuberance, and the length ratio of the main part and the protuberance were analyzed for the anterior process of the postgonite. The height and way of attachment were analyzed for the posterior process of the postgonite. Based on the mtDNA COI locus, eight clusters were distinguished in Network; they formed three groups differing in the area of the anterior process and the way of attachment of the posterior process. The size characteristics of the male sexual appendages of the ancestral forms within the genus Meromyza show an evolutionary trend toward an increase in the postgonite area, while within the clusters there is a trend toward a decrease in this area relative to the species most resembling the hypothetical ancestor. The ancestral forms were characterized by a small area of the postgonite and a short and narrow protuberance of its anterior process. An increase in this area may have led to reduction of the statistical significance of differences in the protuberance and to the appearance of a flap on the lateral part of the postgonite. The functional significance of the postgonite elements and the flap is discussed. Based on the studied morphometric characteristics, the species M. maculata and M. cognata can be placed in the known clusters, even though their COI sequences have not been determined.     

Grassflies of the genus <Emphasis Type="Italic">Polyodaspis</Emphasis> Duda (Diptera,Chloropidae) in the fauna of southeast Asia

Over 200 specimens of Polyodaspis from Vietnam and Thailand (project TIGER) were studied. Variations in the color of the body and, especially, of the setae and setulae of the head, scutellum, and abdomen are demonstrated. The following new synonymy is established: Polyodaspis ruficornis (Macquart, 1835) = P. ruficornis var. tarsalis Frey, 1923, syn. n.; = P. flavipila Duda, 1934, syn. n.; = P. endogena de Meijere, 1938, syn. n.; = P. flavisetosa Nartshuk, 1991, syn. n.; = P. similis Nartshuk, 1991, syn. n.     

A new species of the genus <Emphasis Type="Italic">Scathophaga</Emphasis> Meigen, 1803 (Diptera,Scathophagidae) from Yakutia (Russia)

A new species, Scathophaga yakutica sp. n. (Diptera, Scathophagidae), is described and illustrated based on specimens from Yakutia. Key for the differentiation of the new species from related species is given.     

A new species and rare species of the genus <Emphasis Type="Italic">Campsicnemus</Emphasis> Walker (Diptera,Dolichopodidae) in the Russian fauna

A new species of the genus Campsicnemus Walker (C. bagachanovae Grichanov et Volfov, sp. n.) is described from Yakutia. New records of C. pusillus (Meigen, 1824) and C. varipes Loew, 1859 are given.     

A review of species of the sciarid-fly genus <Emphasis Type="Italic">Lycoriella</Emphasis> Frey (Diptera,Sciaridae) of the Altai fauna

The paper presents a review of 14 species of the sciarid genus Lycoriella Frey from Altai, all of them being recorded for the region for the first time. Two new species, L. subcochleata sp. n. and L. altaica sp. n., are described.     

Three new species of <Emphasis Type="Italic">Luetzelburgia</Emphasis> (<Emphasis Type="Italic">Leguminosae</Emphasis>, <Emphasis Type="Italic">Papilionoideae</Emphasis>) from the caatinga of Bahia,Brazil and an identification key to all species of the genus

Three new species of the Brazilian genus Luetzelburgia Harms (Leguminosae, Papilionoideae, Sophoreae sensu lato (Vataireoid clade)) are described and illustrated under the names Luetzelburgia harleyi D. Cardoso, L. P. Queiroz &; H. C. Lima, L. neurocarpa D. Cardoso, L. P. Queiroz &; H. C. Lima and L. purpurea D. Cardoso, L. P. Queiroz &; H. C. Lima. All three occur in the caatinga vegetation of the State of Bahia, Eastern Brazil. A discussion of the morphological characters distinguishing the new species from their close relatives, as well as an identification key to all known species of Luetzelburgia, are presented.     

<Emphasis Type="Italic">Ty</Emphasis>1<Emphasis Type="Italic">/copia</Emphasis>- and <Emphasis Type="Italic">Ty</Emphasis>3<Emphasis Type="Italic">/gypsy</Emphasis>-like DNA sequences in <Emphasis Type="Italic">Helianthus </Emphasis>species

Two repeated DNA sequences isolated from a partial genomic DNA library of Helianthus annuus, p HaS13 and p HaS211, were shown to represent portions of the int gene of a Ty3 /gypsy retroelement and of the RNase-Hgene of a Ty1 /copia retroelement, respectively. Southern blotting patterns obtained by hybridizing the two probes to BglII- or DraI-digested genomic DNA from different Helianthus species showed p HaS13 and p HaS211 were parts of dispersed repeats at least 8 and 7 kb in length, respectively, that were conserved in all species studied. Comparable hybridization patterns were obtained in all species with p HaS13. By contrast, the patterns obtained by hybridizing p HaS211 clearly differentiated annual species from perennials. The frequencies of p HaS13- and p HaS211-related sequences in different species were 4.3x10(4)-1.3x10(5) copies and 9.9x10(2)-8.1x10(3) copies per picogram of DNA, respectively. The frequency of p HaS13-related sequences varied widely within annual species, while no significant difference was observed among perennial species. Conversely, the frequency variation of p HaS211-related sequences was as large within annual species as within perennials. Sequences of both families were found to be dispersed along the length of all chromosomes in all species studied. However, Ty3 /gypsy-like sequences were localized preferentially at the centromeric regions, whereas Ty1/ copia-like sequences were less represented or absent around the centromeres and plentiful at the chromosome ends. These findings suggest that the two sequence families played a role in Helianthusgenome evolution and species divergence, evolved independently in the same genomic backgrounds and in annual or perennial species, and acquired different possible functions in the host genomes.     

A review of the genus <Emphasis Type="Italic">Deporaus</Emphasis> (Coleoptera,Rhynchitidae) from the Russian fauna: 2. Subgenera <Emphasis Type="Italic">Roelofsideporaus</Emphasis> and <Emphasis Type="Italic">Deporaus</Emphasis>

The subgenera Roelofsideporaus and Deporaus s. str. of the genus Deporaus with four species (D. affectatus, D. unicolor, D. nidificus, and D. betulae) recorded from the Russian fauna are revised. Keys to the species of the subgenus Roelofsideporaus and to the females of the subgenera Roelofsideporaus and Deporaus s. str. are given. The distribution of D. nidificus in Russia is not confirmed.     

A review of the genus <Emphasis Type="Italic">Deporaus</Emphasis> (Coleoptera,Rhynchitidae) from the Russian fauna: 1. Subgenera <Emphasis Type="Italic">Pseudapoderites</Emphasis> and <Emphasis Type="Italic">Japonodeporaus</Emphasis>

The genus Deporaus from the Russian fauna is revised. Four species (D. pacatus, D. azarovae, D. septentrionalis, and D. hartmanni) of the subgenera Pseudapoderites and Japonodeporaus are found. Keys to the subgenera and to the species of the subgenus Pseudapoderites are given. The genus Deporaus, subgenera Pseudapoderites and Japonodeporaus, and four species are redescribed. The distribution of these species in Russia is discussed.     

<Emphasis Type="Italic">In vitro</Emphasis> propagation of the genus <Emphasis Type="Italic">Clivia</Emphasis>

We have developed a protocol for the in vitro propagation of the genus Clivia. Shoots were regenerated when fragments of the peduncle-pedicel junction (PP junction) from young inflorescences were used as explants. The optimal media for PP junction were Murashige and Skoog (MS)-based medium containing 10 M of 6-benzyladenine (BA) and 10 M of 2,4-dichlorophenoxyacetic acid (2,4-D) or MS supplemented with 5 M BA, 10 M -naphthaleneacetic acid (NAA), 250 mg l^-1 glutamine and 500 mg l^–1 casein hydrolysate and their usage depended on the breeding lines. Multiplication from initiations and in vitro seedlings was the best when the explants were cut longitudinally through the meristem and placed on MS plus 44 M BA. Plantlets were transferred on to hormone -free MS medium with charcoal for rooting.     

<Emphasis Type="Italic">Aurifilum,</Emphasis> a new fungal genus in the Cryphonectriaceae from <Emphasis Type="Italic">Terminalia</Emphasis> species in Cameroon

Native Terminalia spp. in West Africa provide a popular source of construction timber as well as medical, spiritual and social benefits to rural populations. Very little is, however, known regarding the diseases that affect these trees. During an investigation into possible diseases of Terminalia spp. in Cameroon, orange to yellow fungal fruiting structures, resembling those of fungi in the Cryphonectriaceae, were commonly observed on the bark of native Terminalia ivorensis, and on dead branches of non-native Terminalia mantaly. In this study the fungus was identified based on morphological features as well as DNA sequence data (ITS and β-tubulin) and its pathogenicity was tested on T. mantaly seedlings. Our results showed that isolates of this fungus represent a previously undescribed genus in the Cryphonectriaceae, which we describe as Aurifilum marmelostoma gen. et sp. nov. Pathogenicity tests revealed that A. marmelostoma is pathogenic on T. mantaly. These tests, and the association of A. marmelostoma with disease symptoms on T. ivorensis, suggest that the fungus is a pathogen of this important tree.     

Phylogeny of members of the <Emphasis Type="Italic">Frankia</Emphasis> genus based on <Emphasis Type="Italic">gyr</Emphasis>B, <Emphasis Type="Italic">nif</Emphasis>H and <Emphasis Type="Italic">gln</Emphasis>II sequences

To construct an evolutionary hypothesis for the genus Frankia, gyrB (encoding gyrase B), nifH (encoding nitrogenase reductase) and glnII (encoding glutamine synthetase II) gene sequences were considered for 38 strains. The overall clustering pattern among Frankia strains based on the three analyzed sequences varied among themselves and with the previously established 16S rRNA gene phylogeny and they did not reliably reflect clear evolution of the four discerned Frankia clusters (1, 2, 3 and 4). Based on concatenated gyrB, nifH and glnII, robust phylogenetic trees were observed with the three treeing methods (Maximum Likelihood, Parsimony and Neighbor-Joining) and supported by strong bootstrap and posterior probability values (>75%) for overall branching. Cluster 4 (non-infective and/or non-nitrogen-fixing Frankia) was positioned at a deeper branch followed by cluster 3 (Rhamnaceae and Elaeagnaceae infective Frankia), while cluster 2 represents uncultured Frankia microsymbionts of the Coriariaceae, Datiscaceae, Rosaceae and of Ceanothus sp. (Rhamnaceae); Cluster 1 (Betulaceae, Myricaceae and Casuarinaceae infective Frankia) appears to have diverged more recently. The present study demonstrates the utility of phylogenetic analyses based upon concatenated gyrB, nifH and glnII sequences to help resolve previously unresolved or poorly resolved nodes and will aid in describing species among the genus Frankia.     

Application of <Emphasis Type="Italic">gyrB</Emphasis> and <Emphasis Type="Italic">parE</Emphasis> sequence similarity analyses for differentiation of species within the genus <Emphasis Type="Italic">Geobacillus</Emphasis>

The primary structures of the genes encoding the β-subunits of a type II topoisomerase (gyrase, gyrB) and a type IV topoisomerase (parE) were determined for 15 strains of thermophilic bacteria of the genus Geobacillus. The obtained sequences were used for analysis of the phylogenetic similarity between members of this genus. Comparison of the phylogenetic trees of geobacilli constructed on the basis of the 16S rRNA, gyrB, and parE gene sequences demonstrated that the level of genetic distance between the sequences of the genes encoding the β-subunits of type II topoisomerases significantly exceeded the values obtained by comparative analysis of the 16S rRNA gene sequences of Geobacillus strains. It was shown that, unlike the 16S rRNA gene analysis, comparative analysis of the gyrB and parE gene sequences provided a more precise determination of the phylogenetic position of bacteria at the species level. The data obtained suggest the possibility of using the genes encoding the β-subunits of type II topoisomerases as phylogenetic markers for determination of the species structure of geobacilli.     

Distribution of <Emphasis Type="Italic">Hordoindoline</Emphasis> genes in the genus <Emphasis Type="Italic">Hordeum</Emphasis>

Hordoindoline (Hin) genes, which are known to comprise Hina, Hinb-1, and Hinb-2, are associated with grain hardness in barley. However, the interspecific variation in the Hin genes in the genus Hordeum has not been studied in detail. We examined the variation in Hin genes and used it to infer the phylogenetic relationships between the genes found in two H. vulgare subspecies (cultivated barley and H. vulgare subsp. spontaneum) and 10 wild relatives (H. bogdanii, H. brachyantherum, H. bulbosum, H. chilense, H. comosum, H. marinum, H. murinum, H. patagonicum, H. pusillum, and H. roshevitzii). The Hina and Hinb genes of these species were amplified by PCR. We found two Hinb genes in three wild species (H. bogdanii, H. brachyantherum, and H. roshevitzii) and preliminarily named them Hinb-A and Hinb-B. Cluster analysis showed that the 17 Hinb genes present in Hordeum formed two distinct clusters (named A and B). Seven Hinb genes were included in Cluster-A, and 10 Hinb genes were included in Cluster-B. All Hinb-A genes were included in Cluster-A, while all of the Hinb-B genes were included in Cluster-B. In contrast, the Hinb-1 and Hinb-2 genes in H. vulgare were included in Cluster-B. These results suggest that the Hinb genes duplicated during the early stages of diversification in the genus Hordeum. On the other hand, the Hinb-1 and Hinb-2 genes in H. vulgare seem to have been generated by a duplication of the Hinb gene after the split of the lineages leading to H. vulgare and H. bulbosum.     

New species of the genus <Emphasis Type="Italic">Scolecostigmina</Emphasis> and revision of <Emphasis Type="Italic">Cercospora cryptomeriicola</Emphasis> on conifers

Scolecostigmina chibaensis on Pinus parviflora is described as a new species. Cercospora cryptomeriicola Sawada on Cryptomeria japonica is transferred to the genus Pseudocercospora, based on the morphological characteristics of the type specimen and newly collected specimens.     

Molecular analysis of the genus <Emphasis Type="Italic">Anoxybacillus</Emphasis> based on sequence similarity of the genes <Emphasis Type="Italic">recN</Emphasis>, <Emphasis Type="Italic">flaA</Emphasis>, and <Emphasis Type="Italic">ftsY</Emphasis>

Genome predictions based on selected genes would be a very welcome approach for taxonomic studies. We analyzed three genes, recN, flaA, and ftsY, for determining if these genes are useful tools for systematic analyses in the genus Anoxybacillus. The genes encoding a DNA repair and genetic recombination protein (recN), the flagellin protein (flaA), and GTPase signal docking protein (ftsY) were sequenced for ten Anoxybacillus species. The sequence comparisons revealed that recN sequence similarities range between 61% and 99% in the genus Anoxybacillus. Comparisons to other bacterial recN genes indicated that levels of similarity did not differ from the levels within genus Anoxybacillus. These data showed that recN is not a useful marker for the genus Anoxybacillus. A 550–600-bp region of the flagellin gene was amplified for all Anoxybacillus strains except for Anoxybacillus contaminans. The sequence similarity of flaA gene varies between 61% and 76%. Comparisons to other bacterial flagellin genes obtained from GenBank (Bacillus, Pectinatus, Proteus, and Vibrio) indicated that the levels of similarity were lower (3–42%). Based on these data, we concluded that the variability in this single gene makes it a particularly useful marker. Another housekeeping gene ftsY suggested to reflect the G+C (mol/mol) content of whole genome was analyzed for Anoxybacillus strains. A mean difference of 1.4% was observed between the G+C content of the gene ftsY and the G+C content of the whole genome. These results showed that the gene ftsY can be used to represent whole G+C content of the Anoxybacillus species.