On the taxonomy and distribution of the leaf-beetle <Emphasis Type="Italic">Macroplea japana</Emphasis> Jacoby, 1885 (Coleoptera,Chrysomelidae)

The species rank of Macroplea japana (Jacoby, 1885) is confirmed based on examination of the holotype. The main characters distinguishing this species from M. mutica are as following: the 4th antennomere is as long as the 3rd segment and somewhat longer than the 2nd segment; the pronotum is smooth, shining, with 3 black longitudinal stripes on the bottoms of 3 longitudinal impressions; the femora and tibiae black apically; the 1st metatarsomere is as long as the 2nd and the 3rd tarsomeres combined and is almost twice as long as the 2nd tarsomere; the claws bear no triangular projection near the bases; the aedeagus forms a shorter apical projection. Macroplea japana is found in Russia (Primorskii Territory) for the first time.     

On the morphology and ecology of the previously unknown larva of the short-palped crane fly <Emphasis Type="Italic">Nasiternella varinervis</Emphasis> (Zetterstedt, 1851) (Diptera,Pediciidae)

The larval morphology of the crane fly Nasiternella varinervis (Zetterstedt) is described for the first time. The larva is closely related to that of Tricyphona immaculata Mg. in the structure of the stigmal plate, but differs in the presence of creeping welts on abdominal segment III; the medial teeth of the hypostomal plate of Nasiternella varinervis being of the same size as the rest teeth, and the antennae being only 2.5 times as long as wide (4 times as long as wide in Tricyphona immaculata). The larvae develop in the dead wood of fallen trunks of deciduous and coniferous trees and are not associated with strongly moistened substrates.     

A review of encyrtid wasps of the genus <Emphasis Type="Italic">Anicetus</Emphasis> Howard, 1896 (Hymenoptera,Chalcidoidea, Encyrtidae) of the new world,Hawaiian Islands,and Australia with description of new species from Mexico

The review contains a characteristic (with diagnosis) of the genus Anicetus Howard, 1896, a key to the females of the 12 species known from the New World, the Hawaiian Islands, and Australia, and a synopsis of the species with data on their distribution, hosts, biology, ecesis, and use in biological control of injurious coccids. Two new species are described from Mexico: Anicetus myartsevae sp. n. and A. villarreali sp. n. Anicetus carolinensis J. Meyer, 2001 from the USA is excluded from the genus and transferred to Homosemion Annecke, 1967. A new combination is established: Anicetus argentinus (Fidalgo, 1979), comb. n. from Paraceraptrocerus Girault, 1920, which is a synonym of Anicetus. The paper is based on the author’s work in the insect depositories of the USA (Washington, San Francisco, and Riverside), Mexico (Ciudad Victoria), and Russia (St. Petersburg). Anicetus myartsevae sp. n. is compared with the Mexican A. primus (Howard, 1898), from which it differs in the antennal scape half as long dorsally as at base (as long as that in A. primus), the legs more or less extensively dark (mainly yellow in A. primus), and the face with a dark transverse stripe (without stripe in A. primus). Anicetus villarrieli sp. n. is a short-winged species.     

A new species of the genus <Emphasis Type="Italic">Encyrtus</Emphasis> (Hymenoptera,Encyrtidae) from Israel

Encyrtus sugonjaevi Simutnik sp. n. is described from Israel. The new species has a bow-like, transverse frontofacial carina extending across the entire width of the head, and the genae with a poorly developed carina. This species clearly differs from the other species of the genus in the following characters: the funicle is wide and flat, with the 1st segment 1.5 times as long as wide; the basal part of the fore wing is glabrous from its base to a transverse band of coarse setae; the transverse band is well developed, bears long and thick setae.     

Characterization of <Emphasis Type="Italic">Bacillus</Emphasis> phage-K2 isolated from chungkookjang,a fermented soybean foodstuff

An investigation of a virulent Bacillus phage-K2 (named Bp-K2) isolated from chungkookjang (a fermented soybean foodstuff) was made. Bp-K2 differed in infectivity against a number of Bacillus subtilis strains including starter strains of chungkookjang and natto, being more infectious to Bacillus strains isolated from the chungkookjang, but much less active against a natto strain. Bp-K2 is a small DNA phage whose genome size is about 21 kb. Bp-K2 is a tailed bacteriophage with an isometric icosahedral head (50 nm long on the lateral side, 80 nm wide), a long contractile sheath (85–90 nm × 28 nm), a thin tail fiber (80–85 nm long, 10 nm wide), and a basal plate (29 nm long, 47 nm wide) with a number of spikes, but no collar. The details of the structures of Bp-K2 differ from natto phage ϕBN100 as well as other known Bacillus phages such as SPO1-like or ϕ 29-like viruses. These data suggest that Bp-K2 would be a new member of the Myoviridae family of Bacillus bacteriophages.     

Deep-sea parasitic nematodes of the genus <Emphasis Type="Italic">Trophomera</Emphasis> Rubtsov et Platonova, 1974 (Benthimermithidae) from the Equatorial Atlantic,with the descriptions of two new species

Nematode females of the genus Trophomera (Benthimermithidae) from the collection of the Smithsonian’s National Museum of Natural History (Washington, DC, USA) were examined. Nematodes were collected in different parts of the Western Atlantic (Hatteras Abyssal Plain, Brazil Basin, and Argentina Basin) from depths of 467–5,223 m. Two new species are described. Body length of T. americana sp. n. is 3,250–4,470 μm; posterior end conical with rounded tip; cephalic setae about 3–4 μm long; trophosome consisting of several longitudinal rows of large cells; ovaries reflected; mature eggs 35 μm in diameter. Body length of T. longiovaris sp. n. is 7,870–15,400 μm; posterior end conical with rounded tip; cephalic sensilla 7 μm long; mouth opening vestigial, present as very narrow apical pore; pharynx devoid of internal lumen and muscular envelope; midgut represents a trophosome without internal lumen; trophosomal cells arranged in 3–4 longitudinal rows; rectum and anus vestigial; female reproductive system didelphic, amphidelphic, very long, occupying about 0.8 total body length; ovaries telogonic, outstretched; oviducts very long, repeatedly folded across body axis; proximal parts of oviducts being than distal ones, uterus distinctly formed. New finds of two known species, T. arnauidi and T. marionensis, are also recorded and described.     

Rapid,long‐term labeling of cells in the developing and adult rodent visual cortex using double‐stranded adeno‐associated viral vectors

Chronic in vivo imaging studies of the brain require a labeling method that is fast, long‐lasting, efficient, nontoxic, and cell‐type specific. Over the last decade, adeno‐associated virus (AAV) has been used to stably express fluorescent proteins in neurons invivo. However, AAV's main limitation for many studies (such as those of neuronal development) is the necessity of second‐strand DNA synthesis, which delays peak transgene expression. The development of double‐stranded AAV (dsAAV) vectors has overcome this limitation, allowing rapid transgene expression. Here, we have injected different serotypes (1, 2, 6, 7, 8, and 9) of a dsAAV vector carrying the green fluorescent protein (GFP) gene into the developing and adult mouse visual cortex and characterized its expression. We observed labeling of both neurons and astrocytes with serotype‐specific tropism. dsAAV‐GFP labeling showed high levels of neuronal GFP expression as early as 2 days postinjection and as long as a month, surpassing conventional AAV's onset of expression and matching its longevity. Neurons labeled with dsAAV‐GFP appeared structurally and electrophysiologically identical to nonlabeled neurons, suggesting that dsAAV‐GFP is neither cytotoxic nor alters normal neuronal function. We also demonstrated that dsAAV‐labeled cells can be imaged with subcellular resolution in vivo over multiple days. We conclude that dsAAV is an excellent vector for rapid labeling and long‐term in vivo imaging studies of astrocytes and neurons on the single cell level within the developing and adult visual cortex. © 2009 Wiley Periodicals, Inc. Develop Neurobiol 2009     

Descriptions of the previously unknown xylobiont larva and pupa of <Emphasis Type="Italic">Atypophthalmus inustus</Emphasis> (Diptera,Limoniidae)

The larval and pupal morphology of Atypophthalmus inustus (Meigen, 1818) are described for the first time. The main diagnostic characters are the following: head capsule massive, frons with 3 short terminal projections, hypostomium with 11 teeth and long narrow split, hypopharynx and labium with well-developed conical teeth, stigmal area with 2 long ventral pigmented spots.     

Comparative osteology,relationships, and systematics of fish of the genus <Emphasis Type="Italic">Zoarces</Emphasis> (Zoarcidae,Perciformes)

Comparative-osteological investigation of all species of the genus Zoarces is made: Z. fedorovi, Z. andriashevi, Z. elongatus, Z. viviparus, Z. americanus, and Z. gillii. In the skeleton of hyoid arch in species of Zoarces, Lycozoarces, and Lycodes, paired bony elements are found, not described previously, identified as parurohyalia which may be synapomorphy of Zoarcidae. Differences between the Zoarces species are revealed by 56 external morphological and osteological characters. Cladistic analysis yielded one tree 135, Ci 0.57, Ri 0.54 long. Cladistic analysis confirms validity of a recently described species Z. fedorovi, which turned out to be the most generalized in the genus Zoarces, as well as the validity of Z. elongatus. The species Z. americanus and Z. gillii occupy a terminal position preventing their isolation to independent genera as was previously supposed, as this would lead to paraphyly of the genus Zoarces.     

Sequence Variation and Comparison of the 5S rRNA Sequences in <Emphasis Type="Italic">Allium</Emphasis> Species and their Chromosomal Distribution in Four <Emphasis Type="Italic">Allium</Emphasis> Species

The gene structure and sequence diversity of 5S rRNA genes were analyzed in 13 Allium species. While the lengths and sequences of the coding gene segments were conserved, the spacers were highly variable and could be characterized as either short (213–404 bp) or long (384–486 bp) spacers. The short spacers were further classified into five subtypes (SS-I to SS-V) and the long spacers into four subtypes (LS-I to LS-IV). The short spacers were more conserved than were the long spacers. There was a sequence duplication of 85 bp in SS-III that distinguished it from SS-II. The coding sequences of the 5S rRNA genes started with CGG and ended with either CCC or TCC. Both long and short spacers started with TTTT at their 5′-ends. However, the long spacers ended with a 3′-TGA sequence, whereas the short spacers terminated with various sequences, such as TTA, ATA, or TGA. GC content ranged from 27 to 41% in whole repeats, and the GC content in the long spacers was lower than in the short spacers. The nucleotide diversity in the coding regions was lower than in the spacers, and the nucleotide diversity in the coding regions did not correlate with that of the spacers. FISH analysis confirmed that each Allium species has either short spacers or long spacers. Although chromosomal locations of the 5S rRNA genes in Allium wakegi confirmed the allodiploid nature of A. cepa and A. fistulosum, spacer sequences revealed the absence of SS-II in A. cepa and in A. wakegi. The current study demonstrated that the 5S rRNA genes diverged in early stages in Allium species differentiation except of the allodiploid A. wakegi.     

The <Emphasis Type="Italic">Lactococcus lactis</Emphasis> FabF fatty acid synthetic enzyme can functionally replace both the FabB and FabF proteins of <Emphasis Type="Italic">Escherichia coli</Emphasis> and the FabH protein of <Emphasis Type="Italic">Lactococcus lactis</Emphasis>

The genome of Lactococcus lactis encodes a single long chain 3-ketoacyl-acyl carrier protein synthase. This is in contrast to its close relative, Enterococcus faecalis, and to Escherichia coli, both of which have two such enzymes. In E. faecalis and E. coli, one of the two long chain synthases (FabO and FabB, respectively) has a role in unsaturated fatty acid synthesis that cannot be satisfied by FabF, the other long chain synthase. Since L. lactis has only a single long chain 3-ketoacyl-acyl carrier protein synthase (annotated as FabF), it seemed likely that this enzyme must function both in unsaturated fatty acid synthesis and in elongation of short chain acyl carrier protein substrates to the C18 fatty acids found in the cellular phospholipids. We report that this is the case. Expression of L. lactis FabF can functionally replace both FabB and FabF in E. coli, although it does not restore thermal regulation of phospholipid fatty acid composition to E. coli fabF mutant strains. The lack of thermal regulation was predictable because wild-type L. lactis was found not to show any significant change in fatty acid composition with growth temperature. We also report that overproduction of L. lactis FabF allows growth of an L. lactis mutant strain that lacks the FabH short chain 3-ketoacyl-acyl carrier protein synthase. The strain tested was a derivative (called the ∆fabH bypass strain) of the original fabH deletion strain that had acquired the ability to grow when supplemented with octanoate. Upon introduction of a FabF overexpression plasmid into this strain, growth proceeded normally in the absence of fatty acid supplementation. Moreover, this strain had a normal rate of fatty acid synthesis and a normal fatty acid composition. Both the ∆fabH bypass strain that overproduced FabF and the wild type strain incorporated much less exogenous octanoate into long chain phospholipid fatty acids than did the ∆fabH bypass strain. Incorporation of octanoate and decanoate labeled with deuterium showed that these acids were incorporated intact as the distal methyl and methylene groups of the long chain fatty acids.     

First record of the drumming signals of stoneflies Capnopsis Morton, 1896 and Protonemura Kempny, 1898 genera (Plecoptera,Capniidae and Nemouridae)

The male drumming signal of Capnopsis schilleri is studied for the first time. It is a monophasic call composed of 4–8 beats with a decreasing frequency. In the present paper, the drumming signals of some Protonemura species are also recorded and described for the first time both in males (Protonemura alcazaba, Protonemura meyeri and Protonemura navacerrada) and females (P. meyeri, P. navacerrada and Protonemura pyrenaica). The male call is very homogeneous in all the studied species and they consist of a repetition of 2–11 sequences of 6–31 beats, with an inter‐beat interval ranging from 0.034 to 0.088 s. The females have monophasic long signals consisting of a repetition of 5 to 109 beats with an inter‐beat interval of 0.061 to 0.159 s. It is extraordinary that females produced signals when males were absent, and so the female signal can be also considered as a call and not only an answer, as usually pointed out in stoneflies.     

<Emphasis Type="Italic">Dipcadi goaense</Emphasis> (Hyacinthaceae), a new species from the foothills of the Western Ghats,India

A new species of Dipcadi (Hyacinthaceae) that is allied to D. concanense (Dalzell) Baker but differs in its small flowers (13 – 18 mm long vs 35 – 47 mm long) and funnel shaped perianth tube (5 – 6  ×  5 – 6 mm vs 18 – 27  ×  4 – 5.5 mm) is described as D. goaense. The new species is apparently endemic, because it is known only from the type locality in Goa state of India. The type locality is at the foothills of Western Ghats and the habitat is a soil covered, lateritic, open area.     

Closely related freshwater macrophyte species,Ceratophyllum demersum and C. submersum,differ in temperature response

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Post‐fire habitat use of the golden‐backed tree‐rat (Mesembriomys macrurus) in the northwest Kimberley,Western Australia

Fire regimes are changing throughout the world. Changed fire patterns across northern Australian savannas have been proposed as a factor contributing to recent declines of small‐ and medium‐sized mammals. Despite this, few studies have examined the mechanisms that underpin how species use habitat in fire‐affected landscapes. We determined the habitats and resources important to the declining golden‐backed tree‐rat (Mesembriomys macrurus) in landscapes partially burnt by recent intense fire. We aimed to (i) compare the relative use of rainforest and savanna habitats; (ii) examine the effect of fire history on use of savanna habitats; and (iii) identify key foraging and denning resources. Habitat selection was examined by comparing the availability of eight habitat types around real (used) and generated (available) location points. Individuals used a range of habitats, but consistently selected long unburnt rainforest in preference to recently burnt savanna (1–12 months post‐fire); however, recently burnt savanna was used in preference to long unburnt savanna. Tree‐rats foraged in Terminalia hadleyana, Planchonia rupestris, Celtis philippensis and Owenia vernicosa, tree species that are found in a variety of habitat types. Individuals used a range of den sites, including cliffs, trees, logs, scree and stags found throughout the study area. Although multiple factors may have led to the decline of Mes. macrurus across its range, these results are consistent with the idea that changes in the savanna structure as a consequence of contemporary fire patterns could also have a role. The continued persistence of Mes. macrurus in the northwest Kimberley may be supported by land management strategies that conserve fruiting and hollow‐bearing trees, and maintain the availability of fire‐sensitive vegetation types.     

Toxicity of pesticides to <Emphasis Type="Italic">Tamarixia radiata</Emphasis>, a parasitoid of the Asian citrus psyllid

Sixteen pesticides including two fungicides were evaluated for toxicity to adult Tamarixia radiata (Waterston) (Hymenoptera: Eulophidae), a parasitoid of the Asian citrus psyllid, Diaphorina citri Kuwayama (Hemiptera: Psyllidae). Percentage mortality data were evaluated to generally assess IPM-compatibility of the pesticides with adult parasitoids. The following were found to be least compatible with (most toxic to) adult T. radiata based on the toxicity of direct sprays and potential long residual life on leaves: carbaryl, chlorpyrifos, and fenpropathrin. Although highly toxic to the parasitoid as direct sprays or freshly dried residues, each of the following was more compatible with T. radiata because the toxicity of residues of these pesticides was either low at one to three days after application or relatively non-persistent: abamectin, chenopodium oil, fenpyroximate, and spirotetramat. Depending on environmental conditions, imidacloprid (foliar-applied), phosmet, pyridaben, sulfur and 435 spray oil might also be somewhat more compatible for the same reasons. The pesticides that consistently appeared to be most compatible with T. radiata were aluminum tris, copper hydroxide, diflubenzuron, and kaolin clay (Surround WP).     

Diversity of Coding Sequences and Gene Structures of the Antifungal Peptide Mytimycin (MytM) from the Mediterranean Mussel, <Emphasis Type="Italic">Mytilus galloprovincialis</Emphasis>

Knowledge on antifungal biomolecules is limited compared to antibacterial peptides. A strictly antifungal peptide from the blue mussel, Mytilus edulis named mytimycin (MytM) was reported in 1996 as partial NH₂ 33 amino acid sequence. Using back-translations of the previous sequence, MytM-related nucleotide sequences were identified from a normalized Mytilus galloprovincialis expressed sequence tag library. Primers designed from a consensus sequence have been used to obtain a fragment of 560 nucleotides, including the complete coding sequence of 456 nucleotides. Precursor is constituted by a signal peptide of 23 amino acids, followed by MytM of 54 amino acids (6.2–6.3 kDa, 12 cysteines) and C-terminal extension of 75 amino acids. Only two major amino acid precursor sequences emerged, one shared by M. galloprovincialis from Venice and Vigo, the other belonging to M. galloprovincialis from Palavas, with nine amino acid differences between the two MytM. Predicted disulfide bonds suggested the presence of two constrained domains joined by amino acidic NIFG track. Intriguing was the presence of conserved canonical EF hand-motif located in the C-terminus extension of the precursor. The MytM gene was found interrupted by two introns. Intron 2 existed in two forms, a long (1,112 nucleotides) and a short (716 nucleotides) one resulting from the removal of the central part of the long one. Both the short (GenBank FJ804479) and the long (GenBank FJ804478) genes are simultaneously present in the mussel genome.     

Chromosome‐level genome assembly of Triplophysa tibetana,a fish adapted to the harsh high‐altitude environment of the Tibetan Plateau

Triplophysa is an endemic fish genus of the Tibetan Plateau in China. Triplophysa tibetana, which lives at a recorded altitude of ~4,000 m and plays an important role in the highland aquatic ecosystem, serves as an excellent model for investigating high‐altitude environmental adaptation. However, evolutionary and conservation studies of T. tibetana have been limited by scarce genomic resources for the genus Triplophysa. In the present study, we applied PacBio sequencing and the Hi‐C technique to assemble the T. tibetana genome. A 652‐Mb genome with 1,325 contigs with an N50 length of 3.1 Mb was obtained. The 1,137 contigs were further assembled into 25 chromosomes, representing 98.7% and 80.47% of all contigs at the base and sequence number level, respectively. Approximately 260 Mb of sequence, accounting for ~39.8% of the genome, was identified as repetitive elements. DNA transposons (16.3%), long interspersed nuclear elements (12.4%) and long terminal repeats (11.0%) were the most repetitive types. In total, 24,372 protein‐coding genes were predicted in the genome, and ~95% of the genes were functionally annotated via a search in public databases. Using whole genome sequence information, we found that T. tibetana diverged from its common ancestor with Danio rerio ~121.4 million years ago. The high‐quality genome assembled in this work not only provides a valuable genomic resource for future population and conservation studies of T. tibetana, but it also lays a solid foundation for further investigation into the mechanisms of environmental adaptation of endemic fishes in the Tibetan Plateau.