Medicinal plants of the Argentine Yungas plants of the Las Yungas biosphere reserve, Northwest of Argentina, used in health care

We have compared the species richness of medicinal plants and the differential patterns of use amongst settlements in the Andean communities of Northwest Argentina which have differing levels of isolation. About 259 ethnoespecies, belonging to 74 plant families, were included, representing between 70 and 80% of the total estimate. The results indicate that Coronopus didymus is the most relevant and important species. The method of use of medicinal plants and the ailments treated by rural doctors compared to those of the layperson is different. Native and exotic plants are used differently according to the body system treated. There are some relationships between internal and external use and body systems and recipes. The greater medicinal species richness found in the less isolated locations is due to external enriching cultural influences.     

Native arbuscular mycorrhizal fungi in the Yungas forests, Argentina

The arbuscular mycorrhizal fungal (AMF) communities from the Yungas forests of Argentina were studied. The AMF species present in the rhizosphere of some dominant native plants (one tree: Alnus acuminata; three herbaceous species: Duchesnea indica, Oxalis conorrhiza, Trifolium aff. repens; and one shrub: Sambucus peruviana) from two sites (Quebrada del Portugués and Narváez Range) of the Yungas forests were isolated, identified and quantified during the four seasons of the year. Twenty-two AMF morphotaxa were found. Spore density of some AMF species at each site varied among seasons. The genera that most contributed to the biodiversity index were Acaulospora for Quebrada del Portugués and Glomus for Narváez Range. High diversity values were observed in the Yungas forests, particularly in the spring (rainy season). We concluded AMF differed in species composition and seasonal sporulation dynamics in the Yungas forests.     

阿根廷Yungas雨林特有翼手类和有袋类(英文)

有学者根据植物组成等特性将Yungas雨林定性为独立的生物地理单元,但这些特性主要是定性的且未包括其动物区系组成。Yungas雨林被认为是动植物种类分布丰富的多样性的区域。然而,尚未有研究评估其动物分布记述的状况。在生物地理学上Yungas雨林使人充满兴趣,它函盖不连续分布的雨林且延伸至温带干旱和半干旱地带。该研究分析了Yungas最南端地区小型哺乳动物特有种分布记录,对比了飞行物种(蝙蝠类)和非飞行物种(有袋类)的分布。结果显示小型哺乳动物特有种是Yungas地区的有效指标;所分析的80%小型有袋类物种和55%蝙蝠类物种支持所鉴定的区域作为特有种区域。所研究的区域与阿根廷西北部及其以下的Yungas的植物学定义一致。该区域以前尚未正式用定量方法评测。结果还发现非飞行特有种较之飞行特有种更合适作为区域尺度上的特有种指标,作者认为飞行特物种作为特有种指标比以前所认为的要更好。     

Diversity and Traditional Knowledge of Textile Dyeing Plants in Northeastern Thailand

The objective of this study was to document the traditional knowledge of plants used for textile dyeing by the Tai-Lao ethnic group in Roi Et province in northeastern Thailand. Traditional knowledge of plants used for textile dyeing is disappearing because of modernization including new lifestyles, urbanization, and the introduction of synthetic colors. Textile dyeing with local plants, however, is experiencing a revival connected to ecotourism and global interest in natural products. To exploit that potential, it is important to preserve the local knowledge related to textile dyeing. We interviewed 60 Tai-Lao informants in 15 villages and 9 districts about their dyeing traditions and the species used through individual semi-structured and focus groups interviews. A total of 56 species in 50 genera and 31 families were used for dyeing cotton and silks; most species belonged to Fabaceae (11 spp., 19%) and Anacardiaceae (5 spp., 9%). Trees (36 spp., 65%) were the best represented life form among the dye plants, followed by shrubs and herbs (8 spp., 16% each), and climbers (4 spp., 7%). Bark was the plant part most commonly used for dyeing (25 spp., 42%) followed by leaves (12 spp., 20%), and fruits (9 spp., 15%). Home gardens were the most common habitat of dye plant (30 spp., 53%) followed by community forests (16 spp., 28%). Indigofera tinctoria L. and Pterocarpus indicus Willd. were the most important dye plant species of the Tai-Lao ethnic group as demonstrated by their high use value index (UV = 0.60). Blue/indigo-blue was the color most informants had common knowledge about with an informant consensus factor (ICF) of 0.92 followed by black with ICF = 0.84. Ten different colors were obtained from the 56 plant species. Brown/pale-brown/golden-brown was the color obtained from most dye plant species (14 spp., 25%) followed by green/pale-green/dark-green (13 spp., 23%). Nine different kinds of mordants were used in the dyeing, including alum, chrome (potassium dichromate; K₂Cr₂O₇), copper sulfate (CuSO₄), iron oxide (Fe₂O₃), tamarind juice (tartaric acid), salt (NaCl), lime (calcium oxide; CaO), ash (potassium hydroxide; KOH), and mud. Among the 56 species used for textile dyeing, three are on the IUCN Red List of Threatened Species, including: Dipterocarpus alatus Roxb. & G.Don, Dipterocarpus obtusifolius Teijsm. ex Miq., and Pterocarpus indicus Willd. Documenting these and other species used for textile dyeing will provide additional arguments for their conservation. It will also help to secure the reappearing tradition of textile dyeing with local plants, and hence support the cultural integrity of the Tai-Lao communities, and serve as an example for other communities in Thailand and elsewhere for preserving their traditional knowledge.     

Decline of Mammal Species Diversity Along the Yungas Forest of Argentina

The southernmost extension of tropical Andean–Amazonian forests protrudes into the arid to semiarid habitats in northwestern Argentina. We analyzed the decline of species richness of forest mammals along these Yungas forests. In particular, we tested whether species decline is due to a general latitudinal effect and whether the drop of species from the assemblages was independent from species' traits and environmental variables. For these tests, we estimated the geographic range edges of 39 species of forest mammal and estimated the species richness with bands of 30'. First, we compared the slope of the decline of species richness from north to south (5.8 species/degree) with the decline expected from the latitudinal species gradient (1–3 species/degree). The decline in species richness of forest mammals along the Yungas was significantly steeper than expected. Second, with a null model assuming a random drop of mammal species we derived confidence limits for the expected species richness and number of range edges within the bands. None of the forest mammals reached the tip of the forest, in marked contrast to nonforest mammals. More range edges than expected from the null model fell within the bands 23°30'–24°00' S and a band near the tip of the Yungas indicating a nonrandom drop of species. The correlation between vulnerability traits and range edges suggests that processes associated with the availability of resources influence the drop of species. We propose that a suite of macroecological attributes interacting with a decrease in habitat quality determines the pattern of species richness in the Yungas forest.     

Pyrosequencing Reveals Changes in Soil Bacterial Communities after Conversion of Yungas Forests to Agriculture

The Southern Andean Yungas in Northwest Argentina constitute one of the main biodiversity hotspots in the world. Considerable changes in land use have taken place in this ecoregion, predominantly related to forest conversion to croplands, inducing losses in above-ground biodiversity and with potential impact on soil microbial communities. In this study, we used high-throughput pyrosequencing of the 16S ribosomal RNA gene to assess whether land-use change and time under agriculture affect the composition and diversity of soil bacterial communities. We selected two areas dedicated to sugarcane and soybean production, comprising both short- and long-term agricultural sites, and used the adjacent native forest soils as a reference. Land-use change altered the composition of bacterial communities, with differences between productive areas despite the similarities between both forests. At the phylum level, only Verrucomicrobia and Firmicutes changed in abundance after deforestation for sugarcane and soybean cropping, respectively. In cultivated soils, Verrucomicrobia decreased sharply (~80%), while Firmicutes were more abundant. Despite the fact that local diversity was increased in sugarcane systems and was not altered by soybean cropping, phylogenetic beta diversity declined along both chronosequences, evidencing a homogenization of soil bacterial communities over time. In spite of the detected alteration in composition and diversity, we found a core microbiome resistant to the disturbances caused by the conversion of forests to cultivated lands and few or none exclusive OTUs for each land-use type. The overall changes in the relative abundance of copiotrophic and oligotrophic taxa may have an impact in soil ecosystem functionality. However, communities with many taxa in common may also share many functional attributes, allowing to maintain at least some soil ecosystem services after forest conversion to croplands.     

Richness,species composition and functional groups in Agaricomycetes communities along a vegetation and elevational gradient in the Andean Yungas of Argentina

The Neotropics are among the least explored regions from a mycological perspective. A few recent molecular studies in South America have shown high fungal diversity as well as numerous groups of mostly undescribed taxa. Through soil metabarcoding analysis we compared richness and species composition among macrofungal communities, belonging to Agaricales, Russulales, Boletales and Phallomycetidae groups, in three elevational forests types in the subtropical Yungas of Northwestern Argentina (Piedmont forest; Montane forest, Montane cloud forest). The aims of this study were to assess richness of taxonomic and functional groups along the elevation gradient and to assess the relationships between environmental variables and species composition in the studied fungal communities. The results have shown rich Agaricomycetes communities, diversely structured among forests habitats. The elevation gradient differentially affected the richness and distribution of Agaricales, Russulales, Boletales and Phallomycetidae. Based on fungal trophic modes and guilds, the gradient also affected the ectomycorrhizal taxa distribution. When considering the basidiomata growth forms (agaricoid, boletoid, gasteroid, etc.), only the secotioid type showed significant elevational differences. Additional analyses indicated that saprotrophic nutritional mode was dominant along the entire gradient, being partially replaced by biotrophic modes at higher elevations. Fungal communities in the Montane cloud forests are most dissimilar when compared with communities at the Piedmont forest and Montane forest, which is consistent with the different biogeographic origins of these forests. DNA metabarcoding sequence analysis provided detailed information on the diversity and taxonomic and functional composition of macrofungal communities.     

Knowledge,Attitudes and Practices Related to Visceral Leishmaniasis in Rural Communities of Amhara State: A Longitudinal Study in Northwest Ethiopia

Background

In the northwest of Ethiopia, at the South Gondar region, there was a visceral leishmaniasis (VL) outbreak in 2005, making the disease a public health concern for the regional health authorities ever since. The knowledge on how the population perceives the disease is essential in order to propose successful control strategies.

Methodology/Principal findings

Two surveys on VL knowledge, attitudes and practices were conducted at the beginning (May 2009) and at the end (February 2011) of a VL longitudinal study carried out in rural communities of Libo Kemkem and Fogera, two districts of the Amhara Regional State. Results showed that VL global knowledge was very low in the area, and that it improved substantially in the period studied. Specifically, from 2009 to 2011, the frequency of proper knowledge regarding VL signs and symptoms increased from 47% to 71% (p<0.0001), knowledge of VL causes increased from 8% to 25% (p<0.0001), and knowledge on VL protection measures from 16% to 55% (p<0.0001). Moreover, the improvement observed in VL knowledge was more marked among the families with no previous history of VL case. Finally, in 2011 more than 90% of the households owned at least an impregnated bed net and had been sprayed, and attitudes towards these and other protective measures were very positive (over 94% acceptance for all of them).

Conclusions/Significance

In 2009 the level of knowledge regarding VL was very low among the rural population of this area, although it improved substantially in the study period, probably due to the contribution of many actors in the area. VL patients and relatives should be appropriately informed and trained as they may act as successful health community agents. VL risk behavioural patterns are subject to change as attitudes towards protective measures were very positive overall.     

植物脂质转移蛋白

脂质转移蛋白(lipid transfer proteins,LTPs)是植物生命活动中一类重要的活性蛋白质,在体外能够可逆地结合和转运多种脂质分子.目前已从多种植物中分离到LTPs基因.随着研究的深入,其不同水平的转录本在不同植物的不同发育阶段和生理条件下的不同组织中被发现,但LTPs体内确切的生理、生化功能和作用机制尚不明确.现介绍目前这一领域细胞与分子生物学方面的研究进展,并结合本课题组的研究结果进行了相关探讨,为进一步研究LTPs在植物生殖发育、抗性和防御反应及信号转导中的作用机制提供了新的线索.     

植物中的水平基因转移

水平基因转移是不通过生殖而进行的遗传物质交流, 在原核生物和单细胞真核生物的进化中起着重要作用。然而, 水平基因转移在多细胞真核生物之间的发生频率以及对多细胞真核生物进化的影响尚不明确。近期的一些研究显示, 水平基因转移在高等植物之间以及高等植物和其它生物之间普遍存在。该文将对高等植物中已发现的一些水平基因转移现象进行综述, 并尝试解析植物之间水平基因转移可能的机制及其重要意义。     

The effect of anthropic pressures and elevation on the large and medium-sized terrestrial mammals of the subtropical mountain forests (Yungas) of NW Argentina

We conducted a 55-day long camera-trap survey in the Yungas subtropical forest in NW Argentina, to assess the effect of human accessibility, conservation status of the area, domestic animals and elevation on the diversity and composition of the large and medium-sized native terrestrial mammal assemblage. We deployed 24 camera-trap stations at distances of ～2 km from each other. The study area is covered by continuous forest and has its center in the small community of Acambuco, in the Acambuco Provincial Reserve. The main economic activity in the area is oil/gas exploitation. Local residents raise cattle, hunt and use timber and non-timber forest products. The human impact was indirectly measured with an accessibility cost model. We used a multiple regression ANCOVA to assess the effect of elevation (range: 628–1170 masl), accessibility, protection status (reserve vs not) and frequency of records of domestic animals on the native mammal species richness and on a nonmetric multidimensional scaling (NMDS) ordination based on the frequency of records of the native mammals recorded at >3 camera-trap stations. We recorded 15 species of native mammals. Native mammal species richness decreased with elevation. Elevation was correlated with NMDS axes. Other predictive variables had no effect on species richness or the NMDS ordination, probably as a result of the relatively narrow range of conditions assessed in this study. The effect of elevation on mammal assemblages should be considered in landscape planning processes aimed at promoting biodiversity conservation.     

Syntrophy and Interspecies Electron Transfer in Methanogenic Microbial Communities

Microbiology - Anaerobic digestion of municipal and other organic waste is a microbial process for conversion of complex organic substances to biogas (a renewable energy source) comprising a...     

Traffic-Related Heavy Metal Accumulation in Soils and Plants in Northwest China

Pollution caused by traffic activities is increasingly becoming a great threat to urban environmental quality and human health in many municipalities in Northwest China. The Sophora japonica L., a native tree species occurring widely in many regions of Northwest China, was used as a case study to assess the potential effects of traffic pollution on heavy metal accumulation in leaves of S. japonica trees and associated soils. Fifty-four leaf samples and 41 relevant soil samples (0–10 cm) were collected systematically along main trunk roads and at parks distant from main trunk roads in the city of Lanzhou, Northwest China, respectively. Traffic pollution has resulted in significant accumulation of heavy metals in both the roadside leaves and soils, but the pattern and level of accumulation varied remarkably between elements. The nine elements examined can be classified into three groups relating to their responses to traffic pollution. The first group, including Zn, Cd, Hg, Pb and Cr, showed greater accumulation in both roadside soils and leaves. The second group, including Co, Ni and As, indicated greater accumulation in the roadside leaves only. The third group included only Cu and demonstrated a greater accumulation in the roadside soils only. Overall, Zn, Cd, Hg, Pb, Cu and Cr concentrations in the roadside soils were higher (8–72%) than those in the park soils, as well as much higher (32–300%) than the background values of the respective elements set for local soils (Lanzhou). Zn, Cd, As, Hg, Pb, Cr, Ni and Co concentrations in the roadside leaves were higher (27–111%) than those in the park leaves. The differences found among elements in the levels of accumulation suggest that the relative importance of the individual elements contributing to urban environmental deterioration will vary considerably.     

On the Ordered Development of Plants 2. Self-thinning in Plant Communities

It is shown that the hypothesis that a growing point on a vegetativeplant requires a minimum rate of supply of assimilate to continuegrowth can quantitatively describe self-thinning in communitiesof Trifolium subterraneum. The hypothesis can also be used toexplain the different relationships observed between mean plantweight and plant density when plants are grown in full daylight,70 per cent shade, and transferred between the two light environments.The implications of the hypothesis to self-thinning in naturalplant communities are discussed. Self-thinning, assimilate, plant development     

Polyphasic Analyses of Methanogenic Archaeal Communities in Agricultural Biogas Plants

Knowledge of the microbial consortia participating in the generation of biogas, especially in methane formation, is still limited. To overcome this limitation, the methanogenic archaeal communities in six full-scale biogas plants supplied with different liquid manures and renewable raw materials as substrates were analyzed by a polyphasic approach. Fluorescence in situ hybridization (FISH) was carried out to quantify the methanogenic Archaea in the reactor samples. In addition, quantitative real-time PCR (Q-PCR) was used to support and complete the FISH analysis. Five of the six biogas reactors were dominated by hydrogenotrophic Methanomicrobiales. The average values were between 60 to 63% of archaeal cell counts (FISH) and 61 to 99% of archaeal 16S rRNA gene copies (Q-PCR). Within this order, Methanoculleus was found to be the predominant genus as determined by amplified rRNA gene restriction analysis. The aceticlastic family Methanosaetaceae was determined to be the dominant methanogenic group in only one biogas reactor, with average values for Q-PCR and FISH between 64% and 72%. Additionally, in three biogas reactors hitherto uncharacterized but potentially methanogenic species were detected. They showed closest accordance with nucleotide sequences of the hitherto unclassified CA-11 (85%) and ARC-I (98%) clusters. These results point to hydrogenotrophic methanogenesis as a predominant pathway for methane synthesis in five of the six analyzed biogas plants. In addition, a correlation between the absence of Methanosaetaceae in the biogas reactors and high concentrations of total ammonia (sum of NH₃ and NH₄⁺) was observed.During the last decade the production of biogas from organic materials and residues has increased continuously in order to reduce the greenhouse gas emission resulting from the use of fossil energy sources. The energy-bearing substance of biogas is methane, which is produced as an end product of microbial anaerobic degradation of organic substrates, such as energy crops like maize, grains, grasses, or beets. Research for optimization of biogas production from renewable materials was initially focused on the evaluation of substrate eligibility and on the development and optimization of technical systems. However, biogas formation primarily depends on the structure and activity of the microbial community (28).The key microorganisms in the biogas formation process are the methane-generating microorganisms (methanogens). The capacity for methanogenesis is limited to members of the domain Archaea and, within this domain, on the phylum Euryarchaeota. With respect to the main metabolic precursors used, methanogens are usually divided into two groups: the aceticlastic methanogens that strictly metabolize acetate and the hydrogenotrophic methanogens that use H₂ or formate as an electron donor and CO₂ as a carbon source for their metabolism. Besides these major groups, certain methanogens are also able to convert methyl groups, methylamines, or methanol to methane (23, 40). The substrates for the methanogens are provided by several physiological groups of bacteria which degrade organic matter, sometimes in close syntrophic interaction with the methanogens (1).Several studies on the microbial diversity present in lab-scale biogas reactors supplied with renewable raw material (7, 57) have been recently published. However, analyses under laboratory conditions do not necessarily reflect conditions in full-scale reactors (35). Therefore, further research on the methanogenic community in full-scale biogas reactors is crucial.Generally, studies regarding the microbial community structure in full-scale biogas reactors have focused on different systems for wastewater treatment or classical biogas plants based on manure digestion (32, 38, 43). In most systems, approximately 70% of the carbon fixed in methane was derived from acetate. Only minor amounts, up to approximately 30%, were deduced from CO₂ (1, 42). Together with the presence of huge assemblages of Methanosarcina sp., it was assumed by some authors that aceticlastic methanogenesis was the predominant pathway for methane formation. Moreover, as shown by other studies, the relative contribution of H₂/CO₂ versus acetate as metabolic precursors for methanogens can be quite different in other anaerobic environments (10, 33, 37). However, the methanogenic microfloras in full-scale biogas reactors supplied with energy crops as a primary or sole substrate have rarely been studied (35, 37, 45).The aim of this study was to gain insight into the diversity of methane-producing Archaea in six full-scale biogas plants supplied with renewable raw material and different types of liquid manure as substrates. Therefore, a polyphasic approach with three different culture-independent techniques (fluorescence in situ hybridization [FISH], quantitative PCR [Q-PCR], and 16S rRNA gene analysis) to analyze methanogen diversity was carried out to overcome the known limitations of each single approach (15, 46). To analyze potential effects of different process parameters on the methanogenic archaeal community, the reactor performances were correlated with the apparent archaeal diversity.     

Shifts in Rhizoplane Communities of Aquatic Plants after Cadmium Exposure

In this study we present the comparative molecular analysis of bacterial communities of the aquatic plant Lemna minor from a contaminated site (RCP) and from a laboratory culture (EPA), as well as each of these with the addition of cadmium. Plants were identified as L. minor by analysis of the rpl16 chloroplast region. Comparative bacterial community studies were based on the analyses of 16S rRNA clone libraries, each containing about 100 clones from the root surfaces of plants. Bacterial communities were compared at three phylogenetic levels of resolution. At the level of bacterial divisions, differences in diversity index scores between treatments, with and without cadmium within the same plant type (EPA or RCP), were small, indicating that cadmium had little effect. When we compared genera within the most dominant group, the β-proteobacteria, differences between unamended and cadmium-amended libraries were much larger. Bacterial diversity increased upon cadmium addition for both EPA and RCP libraries. Analyses of diversity at the phylotype level showed parallel shifts to more even communities upon cadmium addition; that is, percentage changes in diversity indices due to cadmium addition were the same for either plant type, indicating that contamination history might be independent of disturbance-induced diversity shifts. At finer phylogenetic levels of resolution, the effects of cadmium addition on bacterial communities were very noticeable. This study is a first step in understanding the role of aquatic plant-associated microbial communities in phytoremediation of heavy metals.