Soil N mineralization, nitrification and dynamic changes in abundance of ammonia-oxidizing bacteria and archaea along a 2000 year chronosequence of rice cultivation

Background and Aims

Soil mineralization, nitrification, and dynamic changes in abundance of ammonia-oxidizing bacteria (AOB) and archaea (AOA) were studied to validate our hypothesis that soil mineralization and nitrification decreased along the chronosequence of rice cultivation.

Methods

Paddy soils with a 300, 700 and 2000-year cultivation history (P300, P700 and P2000) were selected to study net mineralization and nitrification processes. Dynamic abundance of AOB and AOA was estimated by quantifying their respective amoA gene copies.

Results

The net mineralization rate was higher for P300 than P700 and P2000. Potential nitrification (N _p ) and average nitrification rates (V _a ) were similar for P300 and P700 soils, but the simulated potential nitrification rate (V _p ) and nitrification rate (k₁) was 72 % and 88 % higher for P300 than P700, respectively. V _a was about 70 % lower than for P2000 than P300 and P700. AOB amoA gene copies were higher for P300 than P700 and P2000, whereas AOA abundance did not show significant differences. AOB abundance showed a positive response to NH₄ supply but AOA did not.

Conclusions

Both N mineralization and nitrification were depressed with increased cultivation time. Archaea responded to mineralization positively rather than nitrification, which suggested that readily mineralized organic matter may play an important role in AOA.     

Predicting the efficacy of the nitrification inhibitor dicyandiamide in pastoral soils

Aims

Identification of soil, environmental, or microbial properties linked with efficacy of the nitrification inhibitor dicyandiamide (DCD) in high and low-input pastoral farming system soils.

Methods

Soils were collected from under 25 pastures. Potential nitrification rate (PRN) was quantified in the presence and absence of DCD, and percentage efficacy of DCD in reducing PNR calculated. PNR and %DCD efficacy were statistically tested (REML analysis) for relationships to a suite of edaphic (33), environmental (5), and microbiological (8) variables. Microbiological properties included measurement of bacterial and archaeal ammonia monooxygenase genes (amoA qPCR) and soil DNA content.

Results

DCD reduced PRN by an average of 36 %. The percent DCD efficacy was not related to system intensity, soil type, nor PNR (all P?>?0.05). However the numbers of bacterial amoA genes (r?=?0.46; P?<?0.05), and ratios of bacterial:archaeal amoA (r?=??0.53; P?<?0.05), were strongly correlated to %DCD efficacy. In both high and low input systems, models best explaining variance in %DCD efficacy fitted AOA: AOB g soil^?1 as the first varaible (P?<?0.05).

Conclusions

Characterisation of soils based on ammonia oxidising communities may increase the ability to predict the % efficacy of DCD between sites and provide for more targeted application of this nitrification inhibitor.     

Biological nitrification inhibition (BNI) activity in sorghum and its characterization

Aims

The ability to suppress soil nitrification through the release of nitrification inhibitors from plant roots is termed ‘biological nitrification inhibition’ (BNI). Here, we aimed at the quantification and characterization of the BNI function in sorghum that includes inhibitor production, their chemical identity, functionality and factors regulating their release.

Methods

Sorghum was grown in solution culture and root exudate was collected using aerated NH₄Cl solutions. A bioluminescence assay using recombinant Nitrosomonas europaea was employed to determine the BNI activity. Activity-guided chromatographic fractionation was used to isolate biological nitrification inhibitors (BNIs). The chemical structure was analyzed using NMR and mass spectrometry; pH-stat systems were deployed to analyze the role of rhizosphere pH on BNIs release.

Results

Sorghum roots released two categories of BNIs: hydrophilic- and hydrophobic-BNIs. The release rates for hydrophilic- and hydrophobic- BNIs ranged from 10 to 25 ATU?g^?1 root dwt. d^?1. Addition of hydrophilic BNIs (10 ATU?g^?1 soil) significantly inhibited soil nitrification (40 % inhibition) during a 30-d incubation test. Two BNI compounds isolated are: sakuranetin (ED₈₀ 0.6 μM; isolated from hydrophilic-BNIs fraction) and sorgoleone (ED₈₀ 13.0 μM; isolated from hydrophobic-BNIs fraction), which inhibited Nitrosomonas by blocking AMO and HAO enzymatic pathways. The BNIs release required the presence of NH ₄ ⁺ in the root environment and the stimulatory effect of NH ₄ ⁺ lasted 24 h. Unlike the hydrophobic-BNIs, the release of hydrophilic-BNIs declined at a rhizosphere pH >5.0; nearly 80 % of hydrophilic-BNI release was suppressed at pH ≥7.0. The released hydrophilic-BNIs were functionally stable within a pH range of 5.0 to 9.0. Sakuranetin showed a stronger inhibitory activity (ED₅₀ 0.2 μM) than methyl 3-(4-hydroxyphenyl) propionate (MHPP) (ED₅₀ 100 μM) (isolated from hydrophilic-BNIs fraction) in the in vitro culture-bioassay, but the activity was non-functional and ineffective in the soil-assay.

Conclusions

There is an urgent need to identify sorghum genetic stocks with high potential to release functional-BNIs for suppressing nitrification and to improve nitrogen use efficiency in sorghum-based production systems.     

Soil moisture effects on gross nitrification differ between adjacent grassland and forested soils in central Alberta, Canada

Background and aims

Changes in soil moisture availability seasonally and as a result of climatic variability would influence soil nitrogen (N) cycling in different land use systems. This study aimed to understand mechanisms of soil moisture availability on gross N transformation rates.

Methods

A laboratory incubation experiment was conducted to evaluate the effects of soil moisture content (65 vs. 100% water holding capacity, WHC) on gross N transformation rates using the ¹⁵N tracing technique (calculated by the numerical model FLUAZ) in adjacent grassland and forest soils in central Alberta, Canada.

Results

Gross N mineralization and gross NH ₄ ⁺ immobilization rates were not influenced by soil moisture content for both soils. Gross nitrification rates were greater at 100 than at 65% WHC only in the forest soil. Denitrification rates during the 9 days of incubation were 2.47 and 4.91 mg N kg^-1 soil d^-1 in the grassland and forest soils, respectively, at 100% WHC, but were not different from zero at 65% WHC. In the forest soil, both the ratio of gross nitrification to gross NH ₄ ⁺ immobilization rates (N/IA) and cumulative N₂O emission were lower in the 65 than in the 100% WHC treatment, while in the grassland soil, the N/IA ratio was similar between the two soil moisture content treatments but cumulative N₂O emission was lower at 65% WHC.

Conclusions

The effect of soil moisture content on gross nitrification rates differ between forest and grassland soils and decreasing soil moisture content from 100 to 65% WHC reduced N₂O emissions in both soils.     

A colourimetric microplate assay for simple,high throughput assessment of synthetic and biological nitrification inhibitors

Aim

A simple, rapid, colourimetric method for screening biological nitrification inhibitors in plants is presented.

Methods

Our approach combines the use of the Griess assay to track the rate of nitrite (NO₂ ^?) production by pure cultures of ammonia oxidising bacteria in the presence and absence of nitrification inhibitors with a simple method for collecting root exudates from plants. NO₂ ^? formation was tracked colourimetically on a microplate reader over 9 h of incubation. The advantage of this method is that it provides a simple, high throughput means of measuring biological nitrification inhibition in root exudates, using wild-type bacterial cultures.

Results

NO₂ ^? formation rates and inhibition levels measured using the high through-put method were highly correlated with those measured by tracking NO₂ ^? formation using a segmented flow analyser. The method was able to quantify inhibition of Nitrosomonas europaea by the synthetic nitrification inhibitors allythiourea (AT), dicyandiamide (DCD) and 3,4,-dimethylpyrazole phosphate (DMPP) with IC50 values similar to those reported in the literature. The method detected biological nitrification inhibition (BNI) in root exudates from Brachiaria humidicola and the lack of BNI in root exudates from wheat cv. Janz with minimal alteration of the exudates prior to testing. The results also showed that the more common soil ammonia oxidising bacterium (AOB), Nitrosospira multiformis, was much less sensitive to AT and DCD than N. europaea but had similar sensitivity to DMPP.

Conclusions

This method provides a potentially useful way of screening large numbers of root exudate samples allowing for phenotyping of the BNI trait in crop and pasture populations which will be required for the trait to be introduced into commercial varieties.

     

Phosphorus pools and other soil properties in the rhizosphere of wheat and legumes growing in three soils in monoculture or as a mixture of wheat and legume

Background and aims

Phosphorus and nitrogen availability and forms are affected by soil properties as well as by plant species and further modulated by soil microbes. Additionally, close contact of the roots of two plant species may affect concentrations and forms of N and P. The aim of this study was to assess properties related to N and P cycling in the rhizosphere of wheat and legumes grown in monoculture or in wheat/legume mixtures in three soils differing in pH.

Methods

Faba bean, white lupin and wheat were grown in three soils differing in pH (4.8, 7.5 and 8.8) in monoculture or in mixed culture of wheat and legumes. Rhizosphere soil was collected at flowering and analyzed for P pools by sequential fractionation, available N as well as community structure of bacteria, fungi, ammonia oxidizers, N₂-fixers and P mobilizers by polymerase chain reaction (PCR)—denaturing gradient gel electrophoresis (DGGE).

Results

Soil type was the major factor determining plant growth, rhizosphere nutrient dynamics and microbial community structure. Among the crop species, only faba bean had a significant effect on nitrification potential activity (PNA) in all three soils with lower activity compared to the unplanted soil. Soil type and plant spieces affected the community composition of ammonia-oxidizing archaea (AOB), ammonia-oxidizing archaea (AOA), N₂-fixers (nifH), P mobilizers (ALP gene) and fungi, but not that of bacteria. Among the microbial groups, the AOA and nifH community composition were most strongly affected by crop species, cropping system and soil type, suggesting that these groups are quite sensitive to environmental conditions. All plants depleted some labile as well as non-labile P pools whereas the less labile organic P pools (NaOH extractable P pools, acid extractable P pools) accumulated in the rhizosphere of legumes. The pattern of depletion and accumulation of some P pools differed between monoculture and mixed culture as well as among soils.

Conclusions

Plant growth and rhizosphere properties were mainly affected by soil type, but also by crop species whereas cropping system had the least effect. Wheat and the legumes depleted less labile inorganic P pools in some soils whereas less labile organic P pools (NaOH extractable P, acid extractable P) accumulated in the rhizosphere of legumes.     

Abundance and diversity of ammonia-oxidizing archaea in a biological aerated filter process

Ammonia-oxidizing archaea (AOA) represent an important group of ammonia-oxidizing microorganisms that are able to convert ammonia to nitrite, a function which is crucial for the removal of nitrogen from wastewater. In this study, we investigated the abundance and diversity of AOA in a full-scale wastewater treatment plant (WWTP) which used a biological aerated filter (BAF) as the main processing mode. According to the quantitative PCR results, AOA clearly outnumbered ammonia-oxidizing bacteria (AOB) during the whole process. The abundance of AOA amoA genes in the filter layer of BAF was highest with the value varied from 6.32 × 10³ to 3.8 × 10⁴ copies/ng DNA. The highest abundance of AOB amoA genes was 1.32 × 10² copies/ng DNA, recorded in the effluent of the ACTIFLO® settling tank. The ratios of AOA/AOB in the WWTP were maintained at two or three orders of magnitude. Most AOA obtained from the WWTP fell within the Nitrosopumilus cluster. The abundance of AOA and AOB was significantly correlated with ammonium nitrogen concentrations and pH value. The community structure of AOA was significantly influenced by dissolved oxygen concentrations, pH value and chemical oxygen demand.     

Characteristics of ammonia oxidation potentials and ammonia oxidizers in mineral soil under <Emphasis Type="Italic">Salix polaris</Emphasis>–moss vegetation in Ny-Ålesund,Svalbard

Although nitrification is a unique and important process in the nitrogen cycle with respect to ammonium consumption and nitrate production, limited information on this process is available for high-Arctic soils. We elucidated the ammonia oxidation potentials (AOPs) and characteristics of ammonia-oxidizing bacteria (AOB) and archaea (AOA) in mineral soils under climax vegetation, i.e., Salix polaris (polar willow)–moss vegetation, on a coastal hill in Ny-Ålesund, Svalbard. AOPs at 10 °C were determined by incubation with sufficient substrate (2 mM ammonium). The ammonia monooxygenase subunit A (amoA) genes of AOB and AOA were analyzed by using quantitative polymerase chain reaction and pyrosequencing. AOPs ranged from 1.1 to 14.1 ng N g^?1 dry soil h^?1—relatively low but of a similar order to the gross nitrification rates reported in another Svalbard study. AOP was positively correlated with thickness of the moss layer (P < 0.01), soil water content, and ammonium nitrogen content (P < 0.05). The population sizes of both AOB and AOA were not significantly related to AOP or edaphic factors. For AOB-amoA, six major operational taxonomic units (OTUs) were identified, all of which were classified into the Nitrosospira Mount Everest cluster. For AOA-amoA, six major OTUs were also identified, five of which were grouped with sequences from cold environments within clade A of the Nitrososphaera cluster, i.e., species known to have low, or no, AOP. It is, therefore, possible that the AOPs measured at the study site were driven mainly by psychrotolerant AOB.     

Jack pine foliar δ15N indicates shifts in plant nitrogen acquisition after severe wildfire and through forest stand development

Background and aims

Natural abundance of the stable nitrogen (N) isotope ¹⁵N can elucidate shifts in plant N acquisition and ecosystem N cycling following disturbance events. This study examined the potential relationship between foliar δ¹⁵N and depth of plant N acquisition (surface organic vs. mineral soil) and nitrification as conifer stands develop following stand-replacing wildfire.

Methods

We measured foliar δ¹⁵N along an 18-site chronosequence of jack pine (Pinus banksiana) stands, 1 to 72 years in age post-wildfire. Foliar δ¹⁵N was compared to total δ¹⁵N of the organic (Oe + Oa) and mineral (0–15 cm) soil horizons, and organic horizon N mineralization and nitrification as functions of total mineralization.

Results

Foliar δ¹⁵N declined with stand age, yet wildfire effects were heterogeneous. Jack pine seedlings on burned, mineral soil patches in the youngest stand were significantly more enriched than those on unburned, organic patches (P?=?0.007). High foliar values in the youngest stands relative to mineral-horizon δ¹⁵N indicate that nitrification also likely contributed to seedling enrichment.

Conclusions

Our results suggest jack pine seedlings on burned patches obtain N from the mineral soil with potentially high nitrification rates, whereas seedlings on unburned patches and increasingly N-limited, mature jack pine acquire relatively more N from organic horizons.     

Impact of carbon source amendment on ammonia-oxidizing microorganisms in reservoir riparian soil

Both ammonia-oxidizing archaea (AOA) and bacteria (AOB) can be key players in ammonia biotransformation in the environment. Soil organic matter can affect the distribution of soil AOA and AOB. However, the link between organic matter and AOA and AOB communities remain largely unclear. The current study investigated the impact of organic carbon amendment on the abundance and composition of ammonia-oxidating microorganisms in reed-planted soil in a riparian zone of the Miyun Reservoir (Beijing). The results indicated that AOB outnumbered AOA in riparian wetland soil both before and after glucose application. Glucose application significantly increased the abundance of AOA , but had only a slight impact on the abundance of AOB. The addition of glucose had a strong impact on the community structures of both AOA and AOB. Moreover, phylogenetic analysis indicated that the obtained archaeal amoA gene sequences showed no close relationship with cultivated AOA species. Few Nitrosospira-like AOB sequences were detected in glucose-amended soil. This study may provide some new insight regarding soil ammonia-oxidizing microorganisms.     

Processes leading to N2O and NO emissions from two different Chinese soils under different soil moisture contents

Background and Aims

Great attention has been paid to N₂O emissions from paddy soils under summer rice-winter wheat double-crop rotation, while less focus was given to the NO emissions. Besides, neither mechanism is completely understood. Therefore, this study aimed at evaluating the relative importance of nitrification and denitrification to N₂O and NO emissions from the two soils at different soil moisture contents

Methods

N₂O and NO emissions during one winter wheat season were simultaneously measured in situ in two rice-wheat based field plots at two different locations in Jiangsu Province, China. One soil was neutral in pH with silt loam texture (NSL), the other soil alkaline in pH with a clay texture (AC). A ¹⁵?N tracer incubation experiment was conducted in the laboratory to evaluate the relative importance of nitrification and denitrification for N₂O and NO emissions at soil moisture contents of 40 % water holding capacity (WHC), 65 % WHC and 90 % WHC.

Results

Higher N₂O emission rates in the AC soil than in the NSL soil were found both in the field and in the laboratory experiments; however, the differences in N₂O emissions between AC soil and NSL soil were smaller in the field than in the laboratory. In the latter experiment, nitrification was observed to be the more important source of N₂O emissions (>70 %) than denitrification, regardless of the soils and moisture treatments, with the only exception of the AC soil at 90 % WHC, at which the contributions of nitrification and denitrification to N₂O emissions were comparable. The ratios of NO/N₂O also supported the evidence that the nitrification process was the dominant source of N₂O and NO both in situ and in the laboratory. The proportion of nitrified N emitted as N₂O (P _N2O ) in NSL soil were around 0.02 % in all three moisture treatments, however, P _N2O in the AC soil (0.04 % to 0.10 %) tended to decrease with increasing soil moisture content.

Conclusions

Our results suggest that N₂O emission rates obtained from laboratory incubation experiments are not suitable for the estimation of the true amount of N₂O fluxes on a field scale. Besides, the variations of P _N2O with soil property and soil moisture content should be taken into account in model simulations of N₂O emission from soils.     

Changes in water content of two agricultural soils does not alter labile P and C pools

Aims

An incubation study was conducted to investigate how changes in soil water content affect labile phosphorus and carbon pools, mineralisation patterns and microbial community composition.

Methods

Two soils from different climatic histories were subjected to four long-term (15 weeks) soil water regimes (constant field capacity (m); 3 dry-rewet (DRW) cycles evenly spaced (intermittent, int); 3 DRW cycles with a shorter interval after a long dry period (false break, fb); constantly air-dry (d)) (incubation period 1). In the subsequent incubation period 2, a set of cores from each treatment were subjected to one DRW cycle (air-dry for 7 day; field capacity for 14 day) or maintained at field capacity.

Results

Long-term soil water regime altered soil respiration with the largest CO₂ pulse occurring in soil with the longest dry period. However, changing the distribution of the 3 DRW events within incubation period 1 (int/fb) did not alter cumulative CO₂. In addition, DRW during incubation period 2 did not affect cumulative CO₂ in either treatment (m, int, fb, d) (except for Hamilton int). Our results show that carbon and phosphorus availability and the size and community composition of the microbial biomass were largely unaffected by fluctuating soil water content.

Conclusions

Changes in soil water content altered respiration, phosphatase activity and microbial C:P ratio and indicate physiological and/or functional changes in the microbial community. However, it appeared that these would have little impact on plant P availability.     

Characterization of a recombinant l-fucose isomerase from Caldicellulosiruptor saccharolyticus that isomerizes l-fucose, d-arabinose, d-altrose, and l-galactose

A recombinant l-fucose isomerase from Caldicellulosiruptor saccharolyticus was purified as a single 68 kDa band with an activity of 76 U mg^?1. The molecular mass of the native enzyme was 204 kDa as a trimer. The maximum activity for l-fucose isomerization was at pH 7 and 75°C in the presence of 1 mM Mn²⁺. Its half-life at 70°C was 6.1 h. For aldose substrates, the enzyme displayed activity in decreasing order for l-fucose, with a k _cat of 11,910 min^?1 and a K _m of 140 mM, d-arabinose, d-altrose, and l-galactose. These aldoses were converted to the ketoses l-fuculose, d-ribulose, d-psicose, and l-tagatose, respectively, with 24, 24, 85, 55% conversion yields after 3 h.     

Rice biomass production and carbon cycling in 13CO2 pulse-labeled microcosms with different soils under submerged conditions

Aims

Rice fields are an important source for the greenhouse gas methane. Plants play an essential role in carbon supply for soil microbiota, but the influence of the microbial community on carbon cycling is not well understood.

Methods

Microcosms were prepared using sand-vermiculite amended with different soils and sediments, and planted with rice. The microcosms at different growth stages were pulse-labeled with ¹³CO₂ followed by tracing ¹³C in plant, soil and atmospheric carbon pools and quantifying the abundance of methanogenic archaea in rhizosphere soil.

Results

Overall,?>85 % of the freshly assimilated carbon was allocated in aboveground plant biomass, approximately 10 % was translocated into the roots and?4, but emission of ¹³C-labeled CH₄ started immediately and ¹³C enrichment revealed that plant-derived carbon was an important source for methanogenesis. The results further demonstrated that carbon assimilation and translocation processes, microbial abundance and gas emission were not only affected by the plant growth stage, but also by the content and type of soil in which the rice plants grew.

Conclusions

The study illustrates the close ties between plant physiology, soil properties and microbial communities for carbon turnover and ecosystem functioning.     

Root-induced changes in radial oxygen loss, rhizosphere oxygen profile, and nitrification of two rice cultivars in Chinese red soil regions

Aims

To evaluate the external and internal morphological differences of roots that might influence rice root radial oxygen loss (ROL) and the corresponding rhizosphere nitrification activity, growth characteristics and nitrogen nutrition of rice.

Methods

The root ROL and rhizosphere oxygen profile were determined using a miniaturised Clark-type oxygen microelectrode system, and the rhizosphere nitrification activity was studied with a short-term nitrification activity assay.

Results

The rice biomass, nitrogen accumulation and nitrogen use efficiency (NUE) of ZH (high yield) were significantly higher than those of HS (low yield). The root biomass, number, diameter and porosity of ZH were also much greater than those of HS. The inner and surface oxygen concentrations of the root of ZH were significantly higher than those of HS. The order of paddy soil oxygen penetration depth was ZH?>?HS?>?CK, and the order of the oxygen concentrations detected in the water layer and rhizosphere soil was the same. The rhizosphere nitrification activity and nitrate concentration of ZH were significantly higher than those of HS.

Conclusions

More porous and thicker roots improved the individual root ROL, and more adventitious root numbers enhanced the entire plant ROL and correspondingly improved the rhizosphere nitrification activity, which might influence the growth and nitrogen nutrition of rice.     

Priming Effects of the Endophytic Fungus Phomopsis liquidambari on Soil Mineral N Transformations

Nitrogen (N) is a crucial nutrient for soil biota, and its cycling is determined by the organic carbon decomposing process. Some endophytic fungi are latent saprotrophs that trigger their saprotrophic metabolism to promote litter organic matter cycling as soon as the host tissue senesces or dies. However, the effects of endophytic fungi on litter and soil N dynamics in vitro have rarely been investigated. In this study, we investigated N dynamics (total and mineral N) in both litter and soil in incubations of a pure culture of an endophytic fungus Phomopsis liquidambari with litter and following soil burial of the litter. Soil enzymes and microbial communities participating in the N transformations were also investigated. A pure culture of P. liquidambari released litter NH ₄ ⁺ –N in the initial stages (10 days) of the incubation. However, following soil burial, the presence of both P. liquidambari and soil ammonia-oxidizing bacteria (AOB) resulted in an increase in soil NO ₃ ^? –N. These results indicate that the endophytic fungus P. liquidambari in vitro stimulates organic mineralization and promote NH ₄ ⁺ –N release. Such effects triggered soil AOB-driven nitrification process.     

Nitrate-use traits of understory plants as potential regulators of vegetation distribution on a slope in a Japanese cedar plantation

Background and aims

Plant physiological traits and their relation to soil N availability was investigated as regulators of the distribution of understory shrub species along a slope in a Japanese cedar (Cryptomeria japonica) plantation in central Japan.

Methods

At the study site, previous studies demonstrated that both net and gross soil nitrification rates are high on the lower slope and there are dramatic declines in different sections of the slope gradient. We examined the distributions of understory plant species and their nitrate (NO ₃ ^? -N) use traits, and compared the results with the soil traits.

Results

Our results show that boundaries between different dominant understory species correspond to boundaries between different soil types. Leucosceptrum stellipilum occurs on soil with high net and gross nitrification rates. Hydrangea hirta is dominant on soil with high net and low gross nitrification rates. Pieris japonica occurs on soil with very low net and gross nitrification rates. Dominant understory species have species-specific physiological traits in their use of NO ₃ ^? -N. Pieris japonica lacks the capacity to use NO ₃ ^? -N as a N source, but other species do use NO ₃ ^? -N. Lindera triloba, whose distribution is unrelated to soil NO ₃ ^? -N availability, changes the extent to which it uses NO ₃ ^? -N in response to soil NO ₃ ^? -N availability.

Conclusions

Our results indicate that differences in the physiological capabilities and adaptabilities of plant species in using NO ₃ ^? -N as a N source regulate their distribution ranges. The identity of the major form of available soil N is therefore an environmental factor that influences plant distributions.     

Bracken fern (Pteridium aquilinum L. kuhn) promotes an open nitrogen cycle in heathland soils

Background and Aims

In spite of the broad array of studies conducted on the ecology of bracken fern (Pteridium aquilinum (L.) kuhn), there is currently only a limited understanding of how P. aquilinum alters the soil environment in which it succeeds. P. aquilinum is one of the world’s most aggressive invasive species and is known to effectively invade conservation priority habitats such as Calluna vulgaris (L.) heathland. The aim of this study was to evaluate differences in soil properties between intact stands of C. vulgaris and neighboring P. aquilinum to assess how P. aquilinum alters soil N transformations in a manner that might promote its success.

Methods

Replicate plots in five independently paired stands of P. aquilinum and C. vulgaris were established on land in which P. aquilinum is actively invading. Soils under the two plant types were evaluated for total N, mineralisable N, net nitrification, nitrifier activity, denitrification enzyme activity, polyphenol N complexing capacity, and resin sorption of inorganic N.

Results

Soils under P. aquilinum were consistently higher in NO₃ ^- and NH₄ ⁺ concentrations compared to C. vulgaris. Extractable organic and inorganic N concentrations for soil under P. aquilinum were respectively 65 %, 77 % and 358 % greater in amino N NH₄ ⁺-N and NO₃ ^--N compared to that under C. vulgaris. In-situ net nitrification (NO₃ ^- sorption to ionic resins) was found to be nearly 300 times greater under P. aquilinum than under C. vulgaris.

Conclusions

P. aquilinum alters the soil environment as to create an inorganic N-rich environment that is favorable to its growth and development.     

AOB community structure and richness under European beech, sessile oak, Norway spruce and Douglas-fir at three temperate forest sites

Background and aims

The relations between tree species, microbial diversity and activity can alter ecosystem functioning. We investigated ammonia oxidizing bacteria (AOB) community structure and richness, microbial/environmental factors related to AOB diversity and the relationship between AOB diversity and the nitrification process under several tree species.

Methods

Forest floor (Of, Oh) was sampled under European beech, sessile oak, Norway spruce and Douglas-fir at three sites. AOB community structure was assessed by PCR-DGGE and sequencing. Samples were analyzed for net N mineralization, potential nitrification, basal respiration, microbial biomass, microbial or metabolic quotient, pH, total nitrogen, extractable ammonium, organic matter content and exchangeable cations.

Results

AOB community structure and tree species effect on AOB diversity were site-specific. AOB richness was not related to nitrification. Factors regulating ammonium availability, i.e. net N mineralization or microbial biomass, were related to AOB community structure.

Conclusion

Our research shows that, at larger spatial scales, site specific characteristics may be more important than the nature of tree species in determining AOB diversity (richness and community structure). Within sites, tree species influence AOB diversity. The absence of a relation between AOB richness and nitrification points to a possibly role of AOB abundance, phenotypic plasticity or the implication of ammonia oxidizing archaea.     

Timelapse scanning reveals spatial variation in tomato (Solanum lycopersicum L.) root elongation rates during partial waterlogging

Aims

Effects of soil amendments with crop residues on suppression of damping-off of sugar beet were examined by growing the seedlings in pasteurized, Rhizoctonia solani (AG2-2 IIIB)-infested soil at different temperatures. Dried residues of five dasheen or taro (Colocasia esculenta (L.) Schott) cultivars were compared with those of peanut (Arachys hypogaea L.) and Brassica rapa Olsson for their effects on disease suppression.

Methods and Results

When the seedlings were grown at 17/12 °C (day/night), all residues equally suppressed the disease when amended into the soil just before sowing. At 22/17 or 32/27 °C, damping-off developed in non-treated soil within 10 days, and differential suppressive effects by the residues became apparent by 21 days. When non-pasteurized, non-treated soil was infested with the pathogen, seedling survival was markedly better than in the same but pasteurized, infested soil. Yet, the effect was not different within the entire temperature ranges. Growth of both R. solani and the seedlings peaked near 25 °C and leveled off at higher temperatures.

Conclusions

These results suggest that damping-off was suppressed by antagonistic soil microorganisms, and individual residues elevated their effects differently. Under cool conditions, the antagonists dominated the pathogen to suppress the disease. Under warmer conditions, pathogenesis overcame antagonism depending on the residue, resulting in differential effects of disease suppression.