Estimation of methanotroph abundance in a freshwater lake sediment

The numbers of methane-oxidizing bacteria (methanotrophs) in the sediments of Lake Washington were estimated using three culture-independent methods. Quantitative slot-blot hybridizations were performed with type I and type II methanotroph-specific probes. These data were compared to data from quantitative hybridizations using a pmoA-specific probe and a eubacterial probe. From the combined hybridization data, the methanotroph population in Lake Washington was estimated to be 3.6 x 10(8)-7.4 x 10(8) cells/g dry weight. Methanotroph community structure and number were also investigated using polar lipid fatty acid (PLFA) analysis. Analysis of biomarker PLFAs characteristic of both type I (16:1 omega 8) and type II (18:1 omega 8) methanotrophs was used to estimate the abundance of these bacteria in Lake Washington sediments. From the PLFA data, the methanotroph population in Lake Washington was estimated to be 7.1 x 10(8)-9.4 x 10(9) cells/g dry weight. As a third method of quantitation, we calculated the methanotroph population using the total methane oxidation rate for whole cells in Lake Washington sediment to be 1.3 x 10(8)-1.2 x 10(9) cells/g dry weight. The three independent estimates of the number of methanotrophs in Lake Washington sediment agree within a two- to fourfold range. These data suggest that the three techniques used in this study detect the functionally significant population of methanotrophs in Lake Washington. Furthermore, these techniques will be useful for obtaining estimates of methanotroph abundance in additional environments.     

Analysis of fae and fhcD genes in Mono Lake, California

Genes for two enzymes of the tetrahydromethanopterin-linked C(1) transfer pathway (fae and fhcD) were detected in hypersaline, hyperalkaline Mono Lake (California), via PCR amplification and analysis. Low diversity for fae and fhcD was noted, in contrast to the diversity previously detected in a freshwater lake, Lake Washington (Washington).     

The abundance and biological activity of manganese-oxidizing bacteria and Metallogenium-like morphotypes in Lake Washington, USA

The distribution of bacteria, ATP, Metallogenium morphotypes and manganese-oxidizing activities were studied in Lake Washington, Seattle, WA, U.S.A. In accordance with earlier studies, we have found that Metallogenium morphotypes show a stable seasonal distribution in Lake Washington. We have used ⁵⁴Mn(II) tracer studies coupled with poisoned and no-oxygen controls to demonstrate that biological manganese oxidation was not linked to the numbers of Metallogenium morphotypes. The data suggest that these morphotypes do not contribute significantly to the biological oxidation of manganese in Lake Washington.     

Analysis of sMMO-containing type I methanotrophs in Lake Washington sediment

Methane-oxidizing bacteria (methanotrophs) containing soluble methane monooxygenase (sMMO) are of interest in natural environments due to the high co-metabolic activity of this enzyme with contaminants such as trichloroethylene. We have analysed sMMO-containing methanotrophs in sediment from a freshwater lake. Environmental clone banks for a gene encoding a diagnostic sMMO subunit (mmoX) were generated using DNA extracted from Lake Washington sediment and subjected to RFLP analysis. Representatives from the six RFLP groups were cloned and sequenced, and all were found to group with Type I Methylomonas mmoX, although a majority were divergent from known Methylomonas mmoX sequences. Direct hybridization of Lake Washington sediment DNA was carried out using a series of sMMO- and Methylomonas-specific probes to assess the significance of these sMMO-containing Methylomonas-like strains in the sediment. The total sMMO-containing population and the sMMO-containing Methylomonas-like population were estimated to be similar to previous estimates for total methanotrophs and Type I methanotrophs. These results suggest that the major methanotrophic population in Lake Washington sediment consists of sMMO-containing Methylomonas-like (Type I) methanotrophs. The whole-cell TCE degradation kinetics of such a strain, LW15, isolated from this environment, were determined and found to be similar to values reported for other sMMO-containing methanotrophs. The numerical significance of sMMO-containing Methylomonas-like methanotrophs in a mesotrophic lake environment suggests that these methanotrophs may play an important role in methanotroph-mediated transformations, including co-metabolism of halogenated solvents, in natural environments.     

Spatial and temporal distribution of Caulobacter spp. in two mesotrophic lakes

The seasonal distribution of Caulobacter spp. has been determined in the water column of two mesotrophic lakes using most probable number (MPN) viable counting techniques from April, 1972 to March, 1973. Concentrations in Lake Washington, a monomictic lake, peaked at 1000–3300 per ml in the epilimnion during the late spring and summer and reached lows in October of less than 2 per ml prior to fall turnover. The reason for the decrease in viable numbers is not known. Caulobacter spp. began to increase gradually in December, during the winter mixing period well before the spring bloom. Concentrations in Hall Lake, a small kettle lake, were somewhat higher than in Lake Washington, ranging from 0.27 per ml in October to over 5000 per ml during May. In contrast to Lake Washington, the highest populations were found in the metalimnion and upper hypolimnion of Hall Lake. Caulobacter spp. were also found in the anaerobic depths of the hypolimnion. However, these did not grow anaerobically, suggesting that they had settled into the hypolimnion and survived in the cold anaerobic zone. The populations of Caulobacter spp. reached maximum numbers at the approximate times and depths at which algal biomass would be expected to be greatest.     

The Food and Feeding Chronology of Yellow Perch (Perca flavescens) in Lake Washington

The food habits of yellow perch (Perca flavescens) in Lake Washington, Seattle, U.S.A. were studied over a period of nine months. Altogether 549 yellow perch were examined for the stomach contents. The daily activity pattern of the yellow perch in Lake Washington appears to correspond roughly with the feeding pattern. The maximum numbers of perch caught by the nets during 24 hour study periods correspond well with degree of fullness of stomachs noted for the different times of the day. The food consisted mainly of cottids, mysid shrimps (Acanthomysis awatchensis) and chironomid pupae and larvae. There was no difference in the food consumed between the different sexes and between the different size groups. Maximum feeding by perch during the day was observed just before dark and the daily ration was calculated to be about 1.4% of their wet body weight.     

Analysis of fae and fhcD Genes in Mono Lake, California

Genes for two enzymes of the tetrahydromethanopterin-linked C₁ transfer pathway (fae and fhcD) were detected in hypersaline, hyperalkaline Mono Lake (California), via PCR amplification and analysis. Low diversity for fae and fhcD was noted, in contrast to the diversity previously detected in a freshwater lake, Lake Washington (Washington).     

Spatial and temporal patterns of sediment and nutrient accumulation in shallow lakes of the Upper St. Johns River Basin,Florida

We used paleolimnological methods to investigate spatial and temporal patterns of bulk sediment and nutrient (C, N, P) accumulation in Lakes Hell ‘n’ Blazes (A = 154 ha, zmax = 240 cm), Sawgrass (A = 195 ha, zmax = 157 cm) and Washington (A = 1766 ha, zmax = 322 cm), in the Upper St. Johns River Basin, Florida. The study was designed to evaluate long-term changes in sedimentation and nutrient storage in the basin, and was one component of a larger project addressing flood control, wetland restoration, and water quality improvement. These three study lakes are wide, shallow waterbodies in the upper reaches of the St. Johns River channel. Sediment mapping indicates soft, organic deposits are distributed uniformly throughout Lakes Hell ‘n’ Blazes and Sawgrass. In contrast, much of Lake Washington is characterized by sandy bottom, and organic sediment is largely restricted to the north end of the lake. Lakes Hell ‘n’ Blazes and Sawgrass are effective sediment traps because dense submersed macrophytes and their associated epiphytes reduce flow velocity, intercept suspended particles, and utilize dissolved nutrients. Abundant Hydrilla, combined with short fetch, prevents resuspension and downstream transport of sediments. Larger Lake Washington is probably wind-mixed and resuspended organic sediments are redeposited to downstream sites. 210Pb-dated sediment cores show that organic sediment accumulation began in all three lakes before 1900, but that bulk sediment and nutrient accumulation rates have generally increased since then. The increases are probably attributable, in part, to anthropogenic activities including 1) hydrologic modifications that reduced flow rates in the channel, 2) discharge of nutrient-rich waters from urban, agricultural and ranching areas, and, 3) introduction and periodic herbicide treatment of the exotic macrophytes Eichhornia and Hydrilla.     

Plankton secondary productivity and biomass: Their relation to lake trophic state

The biomass and production of the most important zooplankton species were followed for two years in three lakes of varying trophic status in the Lake Washington watershed. Cladocerans and copepods were of equal importance in the biomass of lakes Findley and Chester Morse (both oligotrophic), whereas, copepods were the main biomass component in Lake Sammamish (mesotrophic). Cladocerans dominated production in lakes Sammamish and Chester Morse, while in Findley Lake their productive role, like that of biomass, was equal to that of the copepods. Rotifers contributed a relatively small biomass and production.Data from this study supported Hillbricht-Ilkowska's postulate that the energy transfer efficiency between the primary and secondary trophic levels decreases with increasing trophic state. Energy transfer efficiencies for the lakes of this study expressed as a two year mean of the ratio-secondary: primary production, were as follows: Findley Lake-0.13; Chester Morse Lake-0.08; and Lake Sammanish-0.04.On the other hand, the hypothesis of Patalas that the secondary productivity: biomass ratio (P/B) tended to increase in proportion to the productivity of a lake, could not be supported. Lake Sammamish, the most productive of the lakes studied, had a P/B ratio of 0.03 while lakes Findley and Chester Morse had P/B ratios of 0.04.     

Reverse evolution of armor plates in the threespine stickleback

Faced with sudden environmental changes, animals must either adapt to novel environments or go extinct. Thus, study of the mechanisms underlying rapid adaptation is crucial not only for the understanding of natural evolutionary processes but also for the understanding of human-induced evolutionary change, which is an increasingly important problem [1-8]. In the present study, we demonstrate that the frequency of completely plated threespine stickleback fish (Gasterosteus aculeatus) has increased in an urban freshwater lake (Lake Washington, Seattle, Washington) within the last 40 years. This is a dramatic example of "reverse evolution,"[9] because the general evolutionary trajectory is toward armor-plate reduction in freshwater sticklebacks [10]. On the basis of our genetic studies and simulations, we propose that the most likely cause of reverse evolution is increased selection for the completely plated morph, which we suggest could result from higher levels of trout predation after a sudden increase in water transparency during the early 1970s. Rapid evolution was facilitated by the existence of standing allelic variation in Ectodysplasin (Eda), the gene that underlies the major plate-morph locus [11]. The Lake Washington stickleback thus provides a novel example of reverse evolution, which is probably caused by a change in allele frequency at the major plate locus in response to a changing predation regime.     

Microsatellite DNA Data Indicate Distinct Native Populations of Kokanee, Oncorhynchus nerka, Persist in the Lake Sammamish Basin, Washington

Large-scale introductions of resident and anadromous salmonids from exogenous sources and urbanization have led to major changes in, and concern for the fate of, indigenous fish populations of the Lake Sammamish/Lake Washington Basin. Specifically, introductions of kokanee (the resident form of Oncorhynchus nerka) from the Lake Whatcom Hatchery and sockeye (the anadromous form of O. nerka) from Baker Lake have caused uncertainty about the ancestry of the kokanee that currently spawn in the basin. We used nine microsatellite loci to investigate the inter-relationships of kokanee populations that spawn in streams in the Sammamish sub-basin, sockeye salmon populations that share spawning areas with the kokanee, Lake Whatcom Hatchery kokanee and Baker Lake sockeye, and an outgroup, Meadow Creek kokanee, from Lake Kootenay which drains into the upper Columbia River. We observed high levels of genetic variation (5–49 alleles per locus). Explicit tests of population sub-division revealed that collections from most spawning aggregations differed from each other. Observed allele frequency distributions strongly suggest that natural spawning kokanee in the basin are not descended from recent Lake Whatcom stock introductions. We found no compelling evidence to suggest that the kokanee sampled from spawning areas within the Lake Sammamish sub-basin have resulted from, or been altered substantially by, past introductions of non-native kokanee or sockeye.     

Sulfur-oxidizing bacteria in Soap Lake (Washington State), a meromictic, haloalkaline lake with an unprecedented high sulfide content

Culture-dependent and -independent techniques were used to study the diversity of chemolithoautotrophic sulfur-oxidizing bacteria in Soap Lake (Washington State), a meromictic, haloalkaline lake containing an unprecedentedly high sulfide concentration in the anoxic monimolimnion. Both approaches revealed the dominance of bacteria belonging to the genus Thioalkalimicrobium, which are common inhabitants of soda lakes. A dense population of Thioalkalimicrobium (up to 10(7) cells/ml) was found at the chemocline, which is characterized by a steep oxygen-sulfide gradient. Twelve Thioalkalimicrobium strains exhibiting three different phenotypes were isolated in pure culture from various locations in Soap Lake. The isolates fell into two groups according to 16S rRNA gene sequence analysis. One of the groups was closely related to T. cyclicum, which was isolated from Mono Lake (California), a transiently meromictic, haloalkaline lake. The second group, consisting of four isolates, was phylogenetically and phenotypically distinct from known Thioalkalimicrobium species and unique to Soap Lake. It represented a new species, for which we suggest the name Thioalkalimicrobium microaerophilum sp. nov.     

Uniform Temperature Dependency in the Phenology of a Keystone Herbivore in Lakes of the Northern Hemisphere

Spring phenologies are advancing in many ecosystems associated with climate warming causing unpredictable changes in ecosystem functioning. Here we establish a phenological model for Daphnia, an aquatic keystone herbivore based on decadal data on water temperatures and the timing of Daphnia population maxima from Lake Constance, a large European lake. We tested this model with long-term time-series data from two lakes (Müggelsee, Germany; Lake Washington, USA), and with observations from a diverse set of 49 lakes/sites distributed widely across the Northern Hemisphere (NH). The model successfully captured the observed temporal variation of Daphnia phenology in the two case study sites (r² = 0.25 and 0.39 for Müggelsee and Lake Washington, respectively) and large-scale spatial variation in the NH (R² = 0.57). These results suggest that Daphnia phenology follows a uniform temperature dependency in NH lakes. Our approach – based on temperature phenologies – has large potential to study and predict phenologies of animal and plant populations across large latitudinal gradients in other ecosystems.     

Environmentally controlled Daphnia spring increase with implications for sockeye salmon fry in Lake Washington, USA

In Lake Washington, juvenile sockeye salmon (Oncorhynchus nerka)strongly prefer Daphnia over other prey, switching uniformlyto Daphnia when the threshold abundance of 0.4 Daphnia L^–1is achieved. Using long-term Lake Washington data (1978–2001)and fry trap data (1992–2001) from a major tributary,we examined the following: (i) factors that predict Daphniapulicaria and Daphnia thorata increase to this threshold "switching"abundance, (ii) trends in Daphnia dynamics that may affect sockeyeforaging and (iii) temporal correspondence of Daphnia increaseand fry arrival. The winter abundance of D. pulicaria, in combinationwith basic parameters of spring conditions, was an importantpredictor of the date of D. pulicaria spring increase, indicatinggreater reliance on pelagic population dynamics (versus diapausehatch) than D. thorata exhibited. In addition, D. pulicariawas a more consistent prey than D. thorata, the latter exhibitinglarger population fluctuations. Thus, recently increasing D.thorata prominence could decrease diet consistency for sockeyefry. Additionally, the timing of sockeye arrival to Lake Washingtonand Daphnia’s increase to the switching threshold hasbecome less concordant, so that fry in recent years have hadto rely upon less profitable prey for longer periods. Long-termtrends and species-specific differences in Daphnia phenologymay affect fry through altering diet composition, with additionalimplications for other zooplankton withstanding greater predationpressure in Daphnia’s absence. Recent decades of warmingin Lake Washington are consistent with the warming of lakesworldwide, and complex phenological responses such as thosereported here may be common as the climate continues to change.     

BOOK REVIEWS

Books reviewed in this article:
The Uses of Ecology: Lake Washington and Beyond W. T. Edmonson     

Characterization,distribution, and significance ofMetallogenium in Lake Washington

During summer stratification,Metallogenium personatun was found exclusively in the hypolimnion of Lake Washington where the oxygen tension was below 8 ppm. Numbers of the organism decreased in the lake immediately following turnover in October. Significant concentrations ofMetallogenium microcolonies did not recur until spring, after the lake had stratified. During stratification the distribution of particulate manganese closely followed the distribution ofMetallogenium. EDAX analysis, confirmed by electron microprobe analyses of the encrustation, showed that the primary component was manganese. Iron and some trace elements were also precipitated on the organism but to a lesser degree. In addition, phosphate, the primary substance limiting phytoplankton growth in Lake Washington, was found in the encrustation, indicatingMetallogenium maybe important in limiting algal blooms in the lake. Attempts to growMetallogenium in the laboratory were unsuccessful. This inability, combined with the negative results of thin-sectioning and acridine orange staining ofMetallogenium microcolonies, suggests that the microcolonial structures seen in Lake Washington are not a living form of an organism.     

Abundance and distribution of Neomysis mercedis and a major predator, longfin smelt (Spirinchus thaleichthys) in Lake Washington

Seasonal variations in the horizontal and depth distributions of Neomysis mercedis and longfin smelt (Spirinchus thaleichthys) were examined using night-time mid-water trawl and Bongo net samples collected in Lake Washington from July 1989 to February 1992. Mysid density varied spatially, seasonally and yearly. For example, during summer, and fall (odd years), mysid abundance was highest in the northern, and lowest in the southern sections of the lake, except in December 1991 when they were uniformly distributed. In fall (November 1990), mysid density was highest in the central basin of the lake. Furthermore, in winter of even years, highest mysid density occurred in the southern region of the lake, but in the central region in winter (February) of odd year. Longfin smelt horizontal distribution also varied seasonally. For example, density of the 1988 YC smelt (1+) was highest in the northern area of Lake Washington in summer but highest in the southern area in fall. During winter, distribution seemed random. The abundance of the 1990 YC smelt (YoY) was also highest in the northern section of the lake in summer, but highest in the southern section in fall; density remained high in the southern section in winter. But, by late spring when they were more than one year old, the distribution had changed such that highest abundance occurred in the northern and mid-section of the lake. By winter when they were about two years old and about to begin spawning, density had become highest again in the southern section. These suggest extensive movement of mysids and smelt from one area to another, perhaps driven by wind-induced water currents in the lake. Depth distribution patterns of mysids and smelt are discussed. Smelt were captured mainly in the shallow strata (8 m) of the lake during all seasons except during winter when they predominated at 50 m. Mysids were also mainly caught in the shallow strata of the lake during all seasons, although a significant proportion occurred at greater depths (> 30 m). The abundance of both species was positively correlated in spring and summer but negatively correlated in fall. A poor correlation was observed in winter. Negative correlation in fall was primarily due to the occurrence of mysids and smelt in different areas of the lake whereas poor correlation in winter was particularly due to their occurrence at different depths. Because of considerable overlap in the distribution of both species in the lake, mysids face a high risk of predation by smelt. This piece of information is consistent with the hypothesis that smelt control mysid abundance in Lake Washington. This revised version was published online in July 2006 with corrections to the Cover Date.     

Patchiness in the Distribution of Planktonic Heterotrophic Bacteria in Lakes

By using conventional dilution plating procedures, the heterotrophic planktonic bacteria in Lake Washington were found to be distributed in small-scale (<1.0 ml) and large-scale (>1 m in horizontal distance) patches. Recommendations are made on sampling and enumeration procedures to minimize the effect of patchiness on obtaining an accurate estimate of bacterial numbers.     

Widespread Distribution of Ability to Oxidize Manganese Among Freshwater Bacteria

Manganese-oxidizing heterotrophic bacteria were found to comprise a significant proportion of the bacterial community of Lake Washington (Seattle, Wash.) and Lake Virginia (Winter Park, Fla.). Identification of these freshwater bacteria showed that members of a variety of genera are capable of oxidizing manganese. Isolates maintained in the laboratory spontaneously lost the ability to oxidize manganese. A direct correlation was found between the presence of plasmid DNA and the ability of the organism to oxidize manganese.     

A wide window of migration phenology captures inter‐annual variability of favourable conditions: Results of a whole‐lake experiment with juvenile Pacific salmon

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