Photosynthesis genes and their expression in Rhodobacter sphaeroides 2.4.1: a tribute to my students and associates

This minireview traces the photosynthesis genes, their structure, function and expression in Rhodobacter sphaeroides 2.4.1, as applied to our understanding of the inducible photosynthetic intracytoplasmic membrane system or ICM. This focus has represented the research interests of this laboratory from the late 1960s to the present. This opportunity has been used to highlight the contributions of students and postdoctorals to this research effort. The work described here took place in a much greater and much broader context than what can be conveyed here. The ‘timeline’ begins with a clear acknowledgment of the work of June Lascelles and William Sistrom, whose foresight intuitively recognized the necessity of a ‘genetic’ approach to the study of photosynthesis in R. sphaeroides. The ‘timeline’ concludes with the completed genome sequence of R. sphaeroides 2.4.1. However, it is hoped the reader will recognize this event as not just a new beginning, but also as another hallmark describing this continuum. This revised version was published online in June 2006 with corrections to the Cover Date.     

Celebrating 20 years of historical papers in Photosynthesis Research

This Editorial has four goals: (1) to inform the readers of ‘Photosynthesis Research‘ about the past of the ‘Historical corner’; which began 20 years ago; (2) to encourage photosynthesis researchers and historians of science to contact me for publishing papers of historical interest; these include: (a) Obituaries and Tributes; (b) historical papers on current and past discoveries and controversies; (c) history of research in specific laboratories, or in specific countries, or at specific conferences; (d) Personal perspectives (not discussed any further); (3) to encourage researchers not to discard, but to save correspondence and data of their discoveries for the future historians by donating them to their Archives, when appropriate (not discussed any further); and (4) to reinforce to the readers that the concept of two-light reaction and two-pigment system was already there in 1959. I mention here three key papers presented at the IX^th International Botanical Congress, held at Montreal Canada (in August, 1959) prior to the famous April 9, 1960 paper by Robert Hill and Fay Bendall on the ‘Z-scheme’ of photosynthesis, that was based on thermodynamic and energetic considerations. ^★ This Historical corner Editorial is dedicated to Bessel Kok (1918–1978).     

From evidence-based medicine to genomic medicine

The concept of ‘evidence-based medicine’ dates back to mid-19th century or even earlier. It remains pivotal in planning, funding and in delivering the health care. Clinicians, public health practitioners, health commissioners/purchasers, health planners, politicians and public seek formal ‘evidence’ in approving any form of health care provision. Essentially ‘evidence-based medicine’ aims at the conscientious, explicit and judicious use of the current best evidence in making decisions about the care of individual patients. It is in fact the ‘personalised medicine’ in practice. Since the completion of the human genome project and the rapid accumulation of huge amount of data, scientists and physicians alike are excited on the prospect of ‘personalised health care’ based on individual’s genotype and phenotype. The first decade of the new millennium now witnesses the transition from ‘evidence-based medicine’ to the ‘genomic medicine’. The practice of medicine, including health promotion and prevention of disease, stands now at a wide-open road as the scientific and medical community embraces itself with the rapidly expanding and revolutionising field of genomic medicine. This article reviews the rapid transformation of modern medicine from the ‘evidence-based medicine’ to ‘genomic medicine’.     

The emergence of biodiversity conflicts from biodiversity impacts: characteristics and management strategies

Conflicts between the conservation of biodiversity and other human activities occur in all habitats and can impact severely upon socio-economic and biological parameters. In a changing environment, with increasing pressure on ecosystem goods and services and increasing urgency for biodiversity conservation, these conflicts are likely to increase in importance and magnitude and negatively affect biodiversity and human well-being. It is essential, however, to better understand what is meant by ‘biodiversity conflicts’ in order to develop ways to manage these effectively. In view of the complexity of the social and ecological contexts of conflicts, this paper explores ‘biodiversity impacts’ linked to agricultural, forestry and other sectoral activities in the UK. The paper then describes the transition from ‘biodiversity impacts’ to ‘biodiversity conflicts’, illustrating this concept with specific examples. While generalisations relating to conflict management are made difficult by their unique contextual settings, this paper suggests approaches for their management, based on the experiences of scientists who have been involved in managing conflicts. We consider the role of science and scientists; trust and dialogue; and temporal and spatial scales in biodiversity conflicts and highlight the combined role they play in successful biodiversity conflict management. Recommendations are also made for future research on biodiversity conflicts in a changing environment.     

Twenty years of biophysics of photosynthesis in Padova, Italy (1984–2005): A tale of two brothers

This paper tells the history of two brothers, almost a generation apart in age, who met again, after having followed different academic paths, to introduce biophysical research in photosynthesis at the University of Padova. The development of two research groups, one in the Chemistry Department, the other in the Biology Department led to a comprehensive interdisciplinary group across academic barriers. The group of Giovanni Giacometti developed in Physical Chemistry, during the years before his retirement, with some roots which can be traced to the famous Linus Pauling school of the mid 1950s, and made possible, by the work of many students (especially Donatella Carbonera and Marilena Di Valentin) and of an older associate (Giancarlo Agostini). The group participated quite actively with a number of European and American laboratories in the application of physical techniques, especially Electron Spin Resonance (EPR) associated with Optical Spectroscopy (Optically Detected Magnetic Resonance; ODMR), and contributed to the development of the understanding of the structure-function relationships in photosynthetic membrane complexes, stimulated by the determination of the X-ray structure of the purple photosynthetic reaction center in the mid 1980s ( J. Deisenhofer, H. Michel, R. Huber and others). The younger brother of Giovanni, Giorgio Mario Giacometti, came to Padova after obtaining biochemical knowledge from the Rossi-Fanelli school in Rome, where Jeffries Wyman, Eraldo Antonini and Maurizio Brunori were the world masters of hemoglobin research. In Padova, together with a group of young scientists (at first Roberto Bassi and Roberto Barbato, now leaders of their own groups in Verona and in Alessandria respectively, followed soon by brilliant coworkers such as Fernanda Rigoni, Elisabetta Bergantino and more recently Ildikò Szabò and Paola Costantini), Giorgio approached more biochemical themes of oxygenic photosynthesis, such as purification and characterization of antenna chlorophyll-protein complexes, Photosystem II (PS II) particles and subunits, having always in mind structural and molecular problems at the level of the largest integrated particles, which are more difficult to investigate in detail by the spectroscopic techniques.This paper is dedicated to the late Arnold J. Hoff; it may be considered Part 2 of ‘Photosynthesis Research in Italy’, and Giorgio Forti et al.’s (2006) paper as Part 1.     

History of the word photosynthesis and evolution of its definition

In 1893, Charles Barnes (1858–1910) proposed that the biological process for ‘synthesis of complex carbon compounds out of carbonic acid, in the presence of chlorophyll, under the influence of light’ should be designated as either ‘photosyntax’ or ‘photosynthesis.’ He preferred the word ‘photosyntax,’ but ‘photosynthesis’ came into common usage as the term of choice. Later discovery of anoxygenic photosynthetic bacteria and photophosphorylation necessitated redefinition of the term. This essay examines the history of changes in the meaning of photosynthesis. This revised version was published online in June 2006 with corrections to the Cover Date.     

Photosynthesis research in Greece: a historical snapshot (1960–2001)

The origin of photosynthesis research in Greece can be traced to the early 1960s, and the first dedicated laboratory was established by George Akoyunoglou in the Nuclear Reseach Center (now National Center for Scientific Research) Demokritos, in Athens. More photosynthesis groups subsequently emerged, in Demokritos and in the universities. Research in Greece benefited greatly from the links of Greek scientists with laboratories and personalities, primarily in the USA and western Europe. The local research output is a proportional part of global research and, more or less, in tune with the shifting priorities of the latter. The list of references provided includes only a sample of publications: it is not inclusive. This revised version was published online in August 2006 with corrections to the Cover Date.     

Photosynthesis parameters and activities of enzymes of oxidative stress in two young ‘Chemlali’ and ‘Chetoui’ olive trees under water deficit

The effects of water deficit on photochemical parameters and activities of superoxide dismutase, catalase, ascorbate peroxidase and glutathione reductase were investigated in two olive cultivars differing in drought tolerance — ‘Chemlali’ and ‘Chetoui’. After 30 days without irrigation, leaf water potential fell to −5.5 MPa that was accompanied by a marked decrease in net photosynthesis in ‘Chetoui’ olive cultivar. Maximal efficiency of PSII photochemistry (F_v/F_m) decreased slightly in ‘Chemlali’ (28 %) and substantially in ‘Chétoui’ (47 %). Both cultivars showed a similar decline (about 25 %) in the photochemical quenching coefficient, but only the drought-sensitive olive cultivar exhibited an enhancement (31 %) of non-photochemical fluorescence quenching under water deficit conditions. The quantum yield of electron transport decreased in both olive cultivars. ‘Chemlali’ showed a higher protection against oxidative stress, as judged from the lower levels of the malondialdehyde production. Catalase activity was higher in ‘Chetoui’. Glutathione reductase activity was increased similarly in both olive cultivars under water stress. Ascorbate peroxidase activity was enhanced in ‘Chemlali’ under water stress, but was unaffected in ‘Chetoui’. While, superoxide dismutase activity was inhibited in both cultivars under water stress, but higher activity was detected in ‘Chemlali’. Thus, the ability to increase ascorbate peroxidase and a higher superoxide dismutase activity might be an important attribute linked to the drought tolerance in ‘Chemlali’ olive cultivar.     

Spatial distribution and movements of plum curculio adults within caged apple trees

In the spring of 1987 and 1988,⁶⁵Zn labeled plum curculios,Conotrachelus nenuphar (Herbst) (Coleoptera: Curculionidae), were released within two field cages, each containing four dwarf apple trees. The cages were surveyed regularly between ‘pink’ and 22 d after ‘fruit set’ stages, and the location of labeled insects and substrates occupied were recorded. Labeled beetles first appeared in trees between ‘pink’ stage and beginning of bloom, and the number within trees gradually increased until ‘petal fall’ stage. Between ‘full bloom’ and 22 d after ‘fruit set’ stages, adults were found on the ground in 54% of the observations. At ‘petal fall’ stage, the main host structures occupied were spurs, twigs, and flowers or fruit. Height in the trees, rate of movement (cm/h), and occurrence on the ground, spurs, flowers or fruits, and leaves and new annual growth, were related to the product of air temperature and relative humidity. Most dispersal from tree to tree occurred between ‘full bloom’ and ‘fruit set’ stages. Highest occurrence in trees was observed between 1800 and 0000 h. In the daytime, labeled adults tended to leave host structures except spurs, which were used as resting sites, mostly by females. Females occurred significantly higher in the tree canopy than males, although egg-laying was most frequent at mid-level. During bloom, up to 30% of plum curculios were found to rest simultaneously at the base of tree trunks, prior to their gradual invasion of trees. This behavior should be taken into account in the development of an effective shelter trap for monitoring this insect, and in the design of integrated control strategies.

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Résumé Au printemps de 1987 et 1988, des charan?ons de la pruneConotrachelus nenuphar (Herbst) (Coleoptera: Curculionidae) adultes et marqués au⁶⁵Zn ont été relachés dans 2 cages extérieures contenant chacune 4 pommiers nains. L'intérieur des cages a été ratissé régulièrement entre le stade ‘bouton rose’ et 22 jours après le stade ‘nouaison’ afin de déterminer la position et les micro-habitats des insectes marqués. La première présence d'adultes dans les arbres fut notée entre le stade ‘bouton rose’ et le début de la floraison, augmentant graduellement par la suite jusqu'au stade ‘calice’. Entre le stade ‘pleine floraison’ et 22 jours après le stade ‘nouaison’, les adultes ont été retrouvés au sol dans 54% des observations. Au stade ‘calice’, les adultes ont été retrouvés principalement sur les lambourdes, les petites branches, les fleurs et les fruits. La hauteur des charan?ons dans les arbres, leur taux de déplacement (cm/h), et leur présence sur le sol, les lambourdes, les fleurs ou fruits, les feuilles et les pousses de l'année ont tous été reliés au produit de la température et de l'humidité relative de l'air. La majorité des déplacements d'un arbre à l'autre fut observée entre les stades ‘pleine floraison’ et ‘nouaison’. La hauteur maximale dans les arbres fut atteinte entre 1800 et 0000 h. Durant le jour, les charan?ons ont montré une tendance à quitter les arbres, sauf pour plusieurs femelles qui ont préférer se réfugier à la base des lambourdes. Les femelles ont également été retrouvées significativement plus haut que les males et ont montré une préférence pour la strate intermédiaire lors de la ponte. Durant la floraison, jusqu'à 30% des charan?ons furent retrouvés simultanément à la base du tronc des pommiers. Ce comportement pourrait être mis à profit pour développer un piège efficace pour le dépistage des adultes, et des stratégies de lutte plus écologiques.

     

Molecular mechanisms of hormone controlled gene expression in the breast

In a meritorious effort H. de Rothschild compiled in 1899 all publications on mammary gland development and milk – a grand total of 8375 [1]. In the preface to this publication Duclaux states: ‘Such a discrepancy between the tremendous efforts and the paltriness of the results – hundreds of scientists and thousands of research years, just to create 200 or 300 pages of truth’. The number of papers added since then must be enormous. Rather than reviewing a vast literature, I will take the liberty and focus on research which, in my opinion, shaped our understanding of hormone controlled gene expression in the developing breast. This revised version was published online in August 2006 with corrections to the Cover Date.     

The contributions of mycorrhizal fungi to the determination of plant community structure

While it is now widely accepted, even by ecologists, that most plants in the majority of ecosystems are infected by mycorrhizal fungi, few experiments have been designed to investigate the function of the mutualism at the community level. Those involved with mycorrhizal research have been largely preoccupied with questions of the mineral, particularly phosphorus, nutrition of individual plants, while plant community ecologists have too often found it convenient, even when acknowledging the presence of infection, to ignore its possible function in the ecosystem. This presentation examines a selected number of seminal papers written by plant community ecologists and highlights some of ‘the most striking mysteries’ which they reveal. It describes experiments designed to determine whether knowledge of the presence and activity of the mycorrhizal mycelium can help us to unravel the ‘mysteries’ which they define. It is revealed that by having direct adverse effects upon seedlings of many ‘r’ selected species, while at the same time being beneficial, if not essential, to those that are ‘K’ selected, the activities of the mycelium of VA fungi have a direct bearing upon community composition. The extent to which ‘turf compatibility’ is actually a reflection of the compatibility of plant species with the VA mycorrhizal mycelium is discussed and the possible role of the mycelium in consigning some species to the ruderal habit is considered. It is concluded that those attempting scientifically to understand, or managerially to manipulate, plant communities, without recognizing the role of the mycorrhizal mycelium, do so at their peril, and it is recommended that scientists involved in research on mycorrhiza extend their vision beyond the limited horizons which are currently so often defined by considerations of the phosphorus nutrition of individual host plants.     

Anatomical structure and gravitropic response of the creeping shoots of ground-cover chrysanthemum ‘Yuhuajinhua’

The chrysanthemum cultivar ‘Yuhuajinhua’ has a creeping habit. The anatomy and distribution of amyloplasts within ‘Yuhuajinhua’ stems were compared to those typical of non-creeping cultivars. ‘Yuhuajinhua’ stems are similar to those of conventional cultivars; but except for the pith, the proportion of the various tissues present in the upper side of stems was higher than that in the lower side. Most of the amyloplasts lie in the centre of the endodermal cells of the ‘Yuhuajinhua’ stems, rather than at the bottom, as is typical for non-creeping cultivars. When ‘Yuhuajinhua’ plants were oriented horizontally and kept in the dark, the stems retained their original growth direction, and the endodermis amyloplasts sedimented according to the gravitational direction. The endodermis amyloplasts responded rapidly to gravistimulation. The content of IAA in the upper side of the ‘Yuhuajinhua’ stems was higher than that in the lower side, associated with the assymetric growth of the stems.     

Semioticians Make Strange Bedfellows! Or, Once Again: “Is Language a Primary Modelling System?”

Like other sciences, biosemiotics also has its time-honoured archive, consisting of writings by those who have been invented and revered as ancestors of the discipline. One such example is Jakob von Uexküll. As to the people who ‘invented’ him, they are either, to paraphrase a French cliché, ‘agents du cosmopolitisme sémiotique’ like Thomas Sebeok, or de jure and de facto progenitor like Thure von Uexküll. In the archive is the special issue of Semiotica 42. 1 (1982) edited by the late Sebeok and introduced by Thure von Uexküll. It is in the opening essay that Thure von UexküIl tries to restore Jakob von Uexküll’s role as a precursor of semiotics by negotiating the Elder with Saussure and the linguistics-oriented ‘semiology’ in his wake. However, semiotic mapping, in the strictly ‘disciplinary’ sense, of Jakob von Uexküll is no easy task because he ‘knew neither Peirce nor Saussure and did not use their terminology’ (Thure von Uexküll 1982,2). Because Thure prefers to call the Elder’s science ‘general semiotics’ (Thure von Uexküll 1982), this paper begins by assessing Thure von Uexküll’s semiotic configuration of Jakob, probe into the force and limits of the linguistic analogy, revisit the already time-honoured debate on the primary and secondary modelling systems, which was made famous by the Moscow-Tartu semioticians in the early 1970s, but severely criticized by Sebeok and his followers. The paper engages Sebeok from several fronts, directed first at his relegation of the Saussurian linguistic model, then at his critique of the Primary Modelling System, and finally at his reservation about evolutionism in light of the current debate on gene/meme co-evolution. Paper presented at the Eighth Annual International Gatherings in Biosemiotics University of the Aegean, Syros, Greece, 23–28 June 2008     

Coloured hailnets alter light transmission,spectra and phytochrome,as well as vegetative growth,leaf chlorophyll and photosynthesis and reduce flower induction of apple

In view of alleged positive effects of coloured (red) hailnets on phytochrome, photosynthesis, yield and fruit quality, the objective of the present work was to investigate a range of red and green hailnets using apple as a model crop with cvs. ‘Pinova’ and ‘Fuji Kiku 8’. Light transmission of green or red hailnets peaked between 500 and 570 nm (green) or above 570 nm (red–orange) and was reduced by 12% (white) or 14% (red–white), 18% (red–black) and 23% (green–black) hailnets; there were no effects on phytochrome. Leaf chlorophyll concentration increased under coloured hailnets by up to 46% under the green–black hailnet, while air temperature was reduced by 0.2°C. Under sunny conditions, photosynthesis of ca. 18 μmol CO₂ m⁻² s⁻¹ was not reduced under coloured hailnets, in contrast with a 21% reduction under cloudy conditions with a concomitant reduction in transpiration by 13%. Vegetative growth was affected in different ways: shaded trees showed smaller trunk diameter, but increased the number and length of their 1-year shoots under coloured hailnets, particularly with cv. ‘Fuji’ when grown under green–black hailnet. Hailnets reduced flower induction in June and return bloom in the next spring to the same extent as they reduced the light transmission. Overall, tree growth under coloured hailnets was genetically influenced, with cv. ‘Fuji’ being more prone and sensitive to adverse effects of coloured hailnets than cv. ‘Pinova’, but is also influenced by the environment. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Differences in adult and reproductive lifespan in the two male forms ofMnais pruinosa costalis selys (Odonata: Calopterygidae)

The damselflyMnais pruinosa costalis (Odonata: Calopterygidae) is unusual in that males are dimorphic, existing as clear-winged non-territorial ‘sneaks’ and orange-winged territorial ‘fighters’. Here we report the results of population census data and behavioural observations in the field and laboratory, and present estimates of emergence period, reproductive period, total lifespan, and reproductive success of each morph. Clear-winged males are smaller and have lower daily reproductive success than orange-winged males, but live for longer in the field and laboratory. We accounted for the difference in the ‘operational reproductive life’ of the two morphs and estimated lifetime reproductive success: there was no difference between clear-winged and orange-winged males. We discuss possible mechanisms for the maintenance of the two forms.     

Influence of indole-butyric acid and electro-pulse on in vitro rooting and development of olive (<Emphasis Type="Italic">Olea europea</Emphasis> L.) microshoots

The effects of indole-butyric acid (IBA) and electro-pulses on rooting and shoot growth were studied in vitro, using olive shoot cultures. Tested shoots were obtained from seedlings belonging to three Spanish cultivars, ‘Arbequina’, ‘Manzanilla de Sevilla’ and ‘Gordal Sevillana’, which have easy-, medium- and difficult-to-root rooting abilities, respectively. The standard two-step rooting method (SRM), consisting of root induction in olive rooting medium supplemented with 0, 0.1 or 1 mg/l IBA followed by root elongation in the same rooting medium without IBA, was compared with a novel one-step method consisting of shoot electro-pulses of 250, 1,250 or 2,500 V in a solution of IBA (0, 0.1 or 1 mg/l) and direct transferral to root elongation medium. The rooting percentage of the seedling-derived shoots obtained with the SRM was 76% for ‘Arbequina’ and ‘Gordal Sevillana’ cultivars and 100% for ‘Manzanilla de Sevilla’ cultivar, whereas with the electro-pulse method, the rooting percentages were 68, 64 and 88%, respectively. IBA dipping without pulse produced 0% rooting in ‘Arbequina’ seedling-derived shoots. The electroporation in IBA not only had an effect on shoot rooting but also on shoot growth and development, with longer shoots and higher axillary shoot sprouting and growth after some of the treatments. These effects were cultivar-dependent. The electro-pulse per se could explain some of these effects on shoot development. I.M.G. Padilla and I. Vidoy contributed equally to this article.     

Photoautotrophic shoot and root development for triploid melon

The aim of this investigation was to establish environmental factors which promote growth and photosynthesis of melon (Cucumis melo L.) shoot buds, in vitro, and determine if photoautotrophic shoots had superior root forming ability in photoautotrophic environments. Buds from the triploid melon clone ‘(L-14×B)×L-14’ were observed for 21 days after transfer from a multiplication MS medium with 3% sucrose and 10 μM benzyladenine (BA) to a shoot development medium with 1 μM BA at three levels of sucrose in the medium (0, 1 and 3%), and light (50, 100 and 150 PPF) and CO₂ (500, 1000 and 1500 ppm) in the culture chamber. More shoot buds were observed with 3% sucrose in the medium. Increased light and CO₂ had a positive interaction with shoot proliferation. Fresh and dry weights were greatest at 3% sucrose, 150 PPF light and 1500 ppm CO₂. Shoot buds grew more slowly in sugar-free medium, but fresh and dry weight still doubled over 21 days of culture. Net photosynthetic rates (NPR) of buds were negative after four days in treatment conditions, but became positive after transfer to fresh, sugar-free medium. Two triploid genotypes of melon were (1) grown in vitro with sugar (photomixotrophic) and without sugar (photoautotrophic), (2) rooted in sugar-free media, both in a laboratory controlled environment chamber (in vitro) and a greenhouse acclimatization unit (ex vitro), and (3) compared for subsequent nursery growth in the greenhouse unit. The genotype ‘(L-14×B)×L-14’ produced more shoots than ‘(L-14×B)×Mainstream’ in both photomixotrophic or photoautotrophic conditions. ‘(L-14×B)×L-14’ rooted as well from either photoautotrophic and photomixotrophic shoots but ‘(L-14×B)×Mainstream’ rooted less frequently from photoautotrophic shoots. Seventy-six percent of the shoots in the laboratory controlled environment chamber were able to root photoautotrophically, whereas 47% of the shoots in the greenhouse acclimatization unit were rooted. Between 77% and 88% of plantlets from all treatment combinations survived transfer to the nursery. After growth in the nursery, the sizes of plants (fresh weight, dry weight, leaf area) were the same for either genotype, from either photoautotrophic or photomixotrophic shoots. Nursery plants that had been rooted in the laboratory controlled environment chamber were larger than those rooted in the acclimatization greenhouse chamber. This revised version was published online in June 2006 with corrections to the Cover Date.     

A Public Sentiment Index for Ecosystem Management

Although ecosystem-based management can lead to sustainable resource use, its successful implementation depends on stakeholders’ acceptance. A framework to integrate scientific knowledge about the ecosystems with stakeholders’ preferences is therefore needed. We propose here a ‘Public Sentiment Index,’ or PSI, as an integration framework that combines an ecosystem model (Ecopath with Ecosim; EwE) with a public choice model (the damage schedule). Using Chesapeake Bay as a case study, we demonstrate the development of the PSI, based on judgments of Bay stakeholders, including ‘watermen’ (commercial fishers), seafood wholesalers and retailers, recreational fishers, representatives from non-governmental organizations, scientists and managers on a range of Bay ecosystems. The high PSI for Chesapeake Bay suggests a consensus amongst Bay stakeholders who, understanding the need for restoring the Bay ecosystem, may accept difficult policy choices and support their implementation.     

An RNA Phage Lab: MS2 in Walter Fiers’ Laboratory of Molecular Biology in Ghent, from Genetic Code to Gene and Genome, 1963–1976

The importance of viruses as model organisms is well-established in molecular biology and Max Delbrück’s phage group set standards in the DNA phage field. In this paper, I argue that RNA phages, discovered in the 1960s, were also instrumental in the making of molecular biology. As part of experimental systems, RNA phages stood for messenger RNA (mRNA), genes and genome. RNA was thought to mediate information transfers between DNA and proteins. Furthermore, RNA was more manageable at the bench than DNA due to the availability of specific RNases, enzymes used as chemical tools to analyse RNA. Finally, RNA phages provided scientists with a pure source of mRNA to investigate the genetic code, genes and even a genome sequence. This paper focuses on Walter Fiers’ laboratory at Ghent University (Belgium) and their work on the RNA phage MS2. When setting up his Laboratory of Molecular Biology, Fiers planned a comprehensive study of the virus with a strong emphasis on the issue of structure. In his lab, RNA sequencing, now a little-known technique, evolved gradually from a means to solve the genetic code, to a tool for completing the first genome sequence. Thus, I follow the research pathway of Fiers and his ‘RNA phage lab’ with their evolving experimental system from 1960 to the late 1970s. This study illuminates two decisive shifts in post-war biology: the emergence of molecular biology as a discipline in the 1960s in Europe and of genomics in the 1990s.