Variable Gene Dispersal Conditions and Spatial Deforestation Patterns Can Interact to Affect Tropical Tree Conservation Outcomes

Tropical lowland rain forest (TLRF) biodiversity is under threat from anthropogenic factors including deforestation which creates forest fragments of different sizes that can further undergo various internal patterns of logging. Such interventions can modify previous equilibrium abundance and spatial distribution patterns of offspring recruitment and/or pollen dispersal. Little is known about how these aspects of deforestation and fragmentation might synergistically affect TLRF tree recovery demographics and population genetics in newly formed forest fragments. To investigate these TLRF anthropogenic disturbance processes we used the computer program NEWGARDEN (NG), which models spatially-explicit, individual-based plant populations, to simulate 10% deforestation in six different spatial logging patterns for the plant functional type of a long-lived TLRF canopy tree species. Further, each logging pattern was analyzed under nine varying patterns of offspring versus pollen dispersal distances that could have arisen post-fragmentation. Results indicated that gene dispersal condition (especially via offspring) had a greater effect on population growth and genetic diversity retention (explaining 98.5% and 88.8% of the variance respectively) than spatial logging pattern (0.2% and 4.7% respectively), with ‘Near’ distance dispersal maximizing population growth and genetic diversity relative to distant dispersal. Within logged regions of the fragment, deforestation patterns closer to fragment borders more often exhibited lower population recovery rates and founding genetic diversity retention relative to more centrally located logging. These results suggest newly isolated fragments have populations that are more sensitive to the way in which their offspring and pollen dispersers are affected than the spatial pattern in which subsequent logging occurs, and that large variation in the recovery rates of different TLRF tree species attributable to altered gene dispersal regimens will be a likely outcome of fragmentation. Conservation implications include possible manual interventions (manual manipulations of offspring dispersers and/or pollinators) in forest fragments to increase population recovery and genetic diversity retention.     

Extraction of non-timber forest products in the forests of Biligiri Rangan Hills, India. 5. Influence of dispersal mode on species response to anthropogenic pressures

We examined the response of forest tree species with different dispersal modes to anthropogenic pressure in a dry deciduous forest of South India. The species and their populations were sampled in two forest stands, one in proximity to a Soliga settlement (greater disturbance) and the other distant to the settlement (lower disturbance). Our results suggest that the populations of animal dispersed species than those of wind or passively dispersed species are more vulnerable to human disturbance. In fact wind dispersed species seem to be facilitated by human disturbances. The proximal site had a higher representation of understory plants and seedling belonging to wind dispersed species than that of animal dispersed species. We discuss the results in the context of the role of dispersal mode in shaping species response, and vegetation composition of forest to anthropogenic pressures.     

Primate Populations and Their Interactions with Changing Habitats

Given that 90% of nonhuman primates depend on tropical forests, the most effective way to conserve them must emphasize the conservation of tropical forest habitats. To achieve this effectively, we need to address root causes of forest disturbance in developing nations: poverty, high population growth rates, crippling foreign debts, and the overdependence on tree and land resources. Moreover, it is now generally accepted that most primate populations will in future live in modified forest habitats. Studies of how primate populations respond to forest habitat modifications are therefore critical to future primate conservation. Currently most studies of primate responses to forest habitat alterations are difficult to interpret owing to differences in research methods and lack of information on the past histories of the modified forests. We review potential factors that may have to be considered while evaluating primate responses to forest habitat changes such as degradation and fragmentation.     

Not seeing the ocean for the islands: the mediating influence of matrix-based processes on forest fragmentation effects

The pervasive influence of island biogeography theory on forest fragmentation research has often led to a misleading conceptualization of landscapes as areas of forest/habitat and 'non-forest/non-habitat' and an overriding focus on processes within forest remnants at the expense of research in the human-modified matrix. The matrix, however, may be neither uniformly unsuitable as habitat nor serve as a fully–absorbing barrier to the dispersal of forest taxa. In this paper, we present a conceptual model that addresses how forest habitat loss and fragmentation affect biodiversity through reduction of the resource base, subdivision of populations, alterations of species interactions and disturbance regimes, modifications of microclimate and increases in the presence of invasive species and human pressures on remnants. While we acknowledge the importance of changes associated with the forest remnants themselves (e.g. decreased forest area and increased isolation of forest patches), we stress that the extent, intensity and permanence of alterations to the matrix will have an overriding influence on area and isolation effects and emphasize the potential roles of the matrix as not only a barrier but also as habitat, source and conduit. Our intention is to argue for shifting the examination of forest fragmentation effects away from a patch-based perspective focused on factors such as patch area and distance metrics to a landscape mosaic perspective that recognizes the importance of gradients in habitat conditions.     

Anthropogenic edges impact howler monkey (Alouatta palliata) feeding behaviour in a Costa Rican rainforest

Anthropogenic forest fragmentation impacts many aspects of animal behaviour, including feeding ecology. With forests increasingly fragmented in tropical regions due to human development, the proportion of forest edge (≤?100 m from clear-cut regions) is higher relative to forest interior. Forest edges differ in vegetation from interior, making it important to better understand how anthropogenic edges impact the feeding behaviour of primates such as mantled howler monkeys (Alouatta palliata). We predicted that howler monkeys would feed on higher-quality plant resources, from a larger number of tree families, and from larger trees in forest interior compared to anthropogenic forest edge. We surveyed howler monkey feeding behaviour across forest zones in a fragmented rainforest in Costa Rica, La Suerte Biological Research Station. We observed individual monkeys for 30-minute periods, collecting data on their feeding behaviour and tree use at 2-minute intervals. We measured feeding trees and recorded the plant parts and taxonomy of resources consumed. Monkeys consumed more leaves and fewer stems and fed from a smaller number of tree families in the forest interior, while they consumed fewer leaves and more stems and fed from a larger number of tree families in the forest edge. Monkeys also fed from larger, taller trees in the forest interior than the edge. The differences in howler monkey feeding behaviour between forest zones attest to the impact of human disturbance on howler monkey feeding ecology.

     

Disturbance and Resilience in Tropical American Palm Populations and Communities

We review resilience to natural and anthropogenic disturbance of palm populations and communities in tropical America. Response of palms to disturbance depends on their morphological traits, their reproductive strategies and the impacts of these traits and strategies on phenology and gene flow. Human impact induces changes in genetic structure, increasing endogamy and genetic drift in fragmented populations. Forest fragmentation and harvest of palm organs are well documented whereas effects of intermediate disturbance like selective logging, hunting or fire remain poorly known. We recommend emphasis on long-term experiments and on the use of mechanistic approaches in future research to facilitate integration of available data into a theoretical ecological framework.     

西双版纳片断热带雨林的结构、物种组成及其变化的研究

通过对西双版纳地区的６个“龙山”片断热带雨林与同样类型的原始热带雨林的比较研究,探讨了片断热带雨林的群落结构、种类组成、生活型构成、种群结构、植物丰富度及多样性等的变化及其规律。随着热带雨林的片断化,森林边缘效应和人为干扰加剧,热带雨林群落的结构变得不完整,植物丰富度降低。在生活型构成上,附生植物,大、中高位芽植物以及地上芽植物比例减少,藤本植物和小高位芽植物比例明显增高。在种群结构上,受轻、中度干扰的片断雨林,仅含１～２个个体的种类在群落中的相对数量有所增加,乔木种类组成变得不稳定,随着人为干扰的加剧,那些仅有１～２个个体为代表的种类将首先消失。在单位面积种数和物种多样性指数上,情况比较复杂,热带雨林片断化和受到一定干扰可能会增加藤本植物多样性指数,但干扰过度又会减低其多样性指数,附生植物多样性指数则随干扰和隔离时间呈明显下降趋势,但总的说来,片断热带雨林单位面积上的种数远比原始林少得多,随着人为干扰和隔离的加剧,物种多样性指数显著降低。     

Forest fragmentation, synergisms and the impoverishment of neotropical forests

It is well documented that the negative effects of habitat fragmentation are strong enough to promote local as well as regional extinction of canopy and emergent trees in neotropical forests. However, forest fragmentation does not occur alone, but is always associated with other human-induced threats to trees, such as logging, forest burning and hunting of key vertebrate seed dispersers within forest remnants. This association occurs because forest resources are, at least during a certain period, the main income source for local human populations. It is now possible to establish how these threats act in concert causing tree species impoverishment. Based on a predictive model, it is predicted that the most fragmented forest regions have lost or will lose an important part of their tree diversity. New integrated research must urgently test this prediction and investigate how human activities might be regulated in both old and new tropical forest frontiers to avoid species loss. If we fail to do this we will miss the opportunity of proposing sound and efficient guidelines to rescue neotropical forests from species impoverishment.     

Plant–frugivore networks are less specialized and more robust at forest–farmland edges than in the interior of a tropical forest

Forest fragmentation and local disturbance are prevailing threats to tropical forest ecosystems and affect frugivore communities and animal seed dispersal in different ways. However, very little is known about the effects of anthropogenic forest edges and of local disturbance on the structure and robustness of plant–frugivore networks. We carried out focal tree observations to record the frugivore species feeding on eight canopy tree species in the forest interior and at forest–farmland edges in a little and a highly disturbed part of a Kenyan rain forest. For each frugivore species, we recorded its body mass and its forest dependence. We examined how forest edge and local disturbance affected the abundance, the richness and the composition of the frugivore community and tested whether forest edge and local disturbance affected plant frugivore networks. Abundance and species richness of frugivores were higher at edges than in the forest interior. Forest visitors and small‐bodied frugivores increased, while forest specialists decreased in abundance at forest edges. The changes in frugivore community composition resulted in plant–frugivore networks that were more connected, more nested and more robust against species extinctions at forest–farmland edges than in the forest interior. Network specialization was lower at forest edges than in the forest interior because at the edges plant specialization on frugivores was very low in small‐fruited species. In contrast, small‐fruited plants were more specialized than large‐fruited plants in the forest interior. Our findings suggest that forest‐visiting birds may stabilize seed‐dispersal services for small‐fruited plant species at rain forest margins, while seed‐dispersal services for large‐fruited plant species may be disrupted at forest edges due to the decrease of large‐bodied frugviores. To assess the ultimate consequences of bird movements from farmland to forest edges for ecosystem functioning, future studies are required to investigate the seed‐dispersal qualities provided by forest‐visiting bird species in the tropics.     

Assessing the Effects of Multiple Stressors on the Recruitment of Fruit Harvested Trees in a Tropical Dry Forest,Western Ghats,India

The harvest of non-timber forest products (NTFPs), together with other sources of anthropogenic disturbance, impact plant populations greatly. Despite this, conservation research on NTFPs typically focuses on harvest alone, ignoring possible confounding effects of other anthropogenic and ecological factors. Disentangling anthropogenic disturbances is critical in regions such as India’s Western Ghats, a biodiversity hotspot with high human density. Identifying strategies that permit both use and conservation of resources is essential to preserving biodiversity while meeting local needs. We assessed the effects of NTFP harvesting (fruit harvest from canopy and lopping of branches for fruit) in combination with other common anthropogenic disturbances (cattle grazing, fire frequency and distance from village), in order to identify which stressors have greater effects on recruitment of three tropical dry forest fruit tree species. Specifically, we assessed the structure of 54 populations of Phyllanthus emblica, P. indofischeri and Terminalia chebula spread across the Nilgiri Biosphere Reserve, Western Ghats to ask: (1) How are populations recruiting? and (2) What anthropogenic disturbance and environmental factors, specifically forest type and elevation, are the most important predictors of recruitment status? We combined participatory research with an information-theoretic model-averaging approach to determine which factors most affect population structure and recruitment status. Our models illustrate that for T. chebula, high fire frequency and high fruit harvest intensity decreased the proportion of saplings, while lopping branches or stems to obtain fruit increased it. For Phyllanthus spp, recruitment was significantly lower in plots with more frequent fire. Indices of recruitment of both species were significantly higher for plots in more open-canopy environments of savanna woodlands than in dry forests. Our research illustrates an approach for identifying which factors are most important in limiting recruitment of NTFP populations and other plant species that may be in decline, in order to design effective management strategies.     

The effect of deforestation on the genetic diversity and structure in <Emphasis Type="Italic">Acer saccharum</Emphasis> (Marsh): Evidence for the loss and restructuring of genetic variation in a natural system

The level and distribution of genetic diversity can be influenced by species life history traits and demographic factors, including perturbations that might produce population bottlenecks. Deforestation and forest fragmentation are common sources of population disturbance in contemporary populations of forest ecosystems. Although the genetic effects of forest fragmentation and deforestation have been examined by assessing levels of genetic variation in forest fragments that remain after logging, few considerations have been made of the populations that re-colonize once-cleared areas. Here we examine the effects of human-mediated population bottlenecks on the level and distribution of genetic diversity in natural populations of the long-lived forest tree species, Acer saccharum (sugar maple). We compared genetic variation and structure for populations of sugar maple found within old-growth forested area and in area that has re-colonized since logging. In this study the percent polymorphic loci and allelic richness estimates were reduced in the logged populations compared to old-growth populations. Jackknifed estimates of population genetic differentiation showed significantly higher differentiation among logged populations, with this result being consistently seen when individuals within populations were grouped according to diameter at breast height. The result of decreased genetic variation and higher levels of genetic structure among logged populations suggests that even one extensive bout of logging can alter the level and distribution of genetic variation in this forest tree species.     

Habitat fragmentation,tree diversity,and plant invasion interact to structure forest caterpillar communities

Habitat fragmentation and invasive species are two of the most prominent threats to terrestrial ecosystems. Few studies have examined how these factors interact to influence the diversity of natural communities, particularly primary consumers. Here, we examined the effects of forest fragmentation and invasion of exotic honeysuckle (Lonicera maackii, Caprifoliaceae) on the abundance and diversity of the dominant forest herbivores: woody plant-feeding Lepidoptera. We systematically surveyed understory caterpillars along transects in 19 forest fragments over multiple years in southwestern Ohio and evaluated how fragment area, isolation, tree diversity, invasion by honeysuckle and interactions among these factors influence species richness, diversity and abundance. We found strong seasonal variation in caterpillar communities, which responded differently to fragmentation and invasion. Abundance and richness increased with fragment area, but these effects were mitigated by high levels of honeysuckle, tree diversity, landscape forest cover, and large recent changes in area. Honeysuckle infestation was generally associated with decreased caterpillar abundance and diversity, but these effects were strongly dependent on other fragment traits. Effects of honeysuckle on abundance were moderated when fragment area, landscape forest cover and tree diversity were high. In contrast, negative effects of honeysuckle invasion on caterpillar diversity were most pronounced in fragments with high tree diversity and large recent increases in area. Our results illustrate the complex interdependencies of habitat fragmentation, plant diversity and plant invasion in their effects on primary consumers and emphasize the need to consider these processes in concert to understand the consequences of anthropogenic habitat change for biodiversity.     

Pollen,wind and fire: how to investigate genetic effects of disturbance‐induced change in forest trees

Understanding the consequences of habitat disturbance on mating patterns although pollen and seed dispersal in forest trees has been a long‐standing theme of forest and conservation genetics. Forest ecosystems face global environmental pressures from timber exploitation to genetic pollution and climate change, and it is therefore essential to comprehend how disturbances may alter the dispersal of genes and their establishment in tree populations in order to formulate relevant recommendations for sustainable resource management practices and realistic predictions of potential adaptation to climate change by means of range shift or expansion (Kremer et al. 2012 ). However, obtaining reliable evidence of disturbance‐induced effects on gene dispersal processes from empirical evaluation of forest tree populations is difficult. Indeed, tree species share characteristics such as high longevity, long generation time and large reproductive population size, which may impede the experimenter's ability to assess parameters at the spatial and time scales at which any change may occur (Petit and Hampe 2006 ). It has been suggested that appropriate study designs should encompass comparison of populations before and after disturbance as well as account for demonstrated variation in conspecific density, that is, the spatial distribution of mates, and forest density, including all species and relating to alteration in landscape openness (Bacles & Jump 2011 ). However, more often than not, empirical studies aiming to assess the consequences of habitat disturbance on genetic processes in tree populations assume rather than quantify a change in tree densities in forests under disturbance and generally fail to account for population history, which may lead to inappropriate interpretation of a causal relationship between population genetic structure and habitat disturbance due to effects of unmonitored confounding variables (Gauzere et al. 2013). In this issue, Shohami and Nathan ( 2014 ) take advantage of the distinctive features of the fire‐adapted wind‐pollinated Aleppo pine Pinus halepensis (Fig. 1) to provide an elegant example of best practice. Thanks to long‐term monitoring of the study site, a natural stand in Israel, Shohami and Nathan witnessed the direct impact of habitat disturbance, here taking the shape of fire, on conspecific and forest densities and compared pre‐ and postdisturbance mating patterns estimated from cones of different ages sampled on the same surviving maternal individuals (Fig. 2). This excellent study design is all the more strong that Shohami and Nathan took further analytical steps to account for confounding variables, such as historical population genetic structure and possible interannual variation in wind conditions, thus giving high credibility to their findings of unequivocal fire‐induced alteration of mating patterns in P. halepensis. Most notably, the authors found, at the pollen pool level, a disruption of local genetic structure which, furthermore, they were able to attribute explicitly to enhanced pollen‐mediated gene immigration into the low‐density fire‐disturbed stand. This cleverly designed research provides a model approach to be followed if we are to advance our understanding of disturbance‐induced dispersal and genetic change in forest trees.     

Habitat Preferences of the Critically Endangered Greater Bamboo Lemur (Prolemur simus) and Densities of One of Its Primary Food Sources, Madagascar Giant Bamboo (Cathariostachys madagascariensis), in Sites with Different Degrees of Anthropogenic and Natural Disturbance

Understanding the habitat preferences of a species is critical to the management and conservation of its population. The Critically Endangered greater bamboo lemur, Prolemur simus, is patchily distributed across its geographic range, using a very limited fraction of its total area of occurrence. The ecological basis for this patchy distribution remains largely unexplained. We analyzed the local habitat factors affecting the habitat use of Prolemur simus and densities of one of its primary food sources Madagascar giant bamboo, Cathariostachys madagascariensis. We sampled vegetation and site characteristics along belt transects in mid-altitude rain forest areas of the Ankeniheny–Zahamena rain forest corridor in eastern Madagascar, with (N?=?10) and without (N?=?16) evidence of habitat use by Prolemur simus. In our study site the preferred habitat type of Prolemur simus appears to be primary forest stands with moderate to low levels of human disturbance, greater natural disturbance, high densities of large diameter bamboo, and high structural diversity in tree heights. Cathariostachys madagascariensis appears to exploit canopy gaps created by natural disturbances, and similarly often exploits areas of anthropogenic disturbance. We found the highest densities of bamboo to occur in areas of moderate anthropogenic disturbance, whereas larger diameter culms were associated with lower levels of disturbance and smaller culms with areas of high anthropogenic disturbance. Human use of the forest and protection of the habitat of Prolemur simus are not necessarily incompatible, but our data indicate that the severity and frequency of use should probably be relatively low. Our results suggest that in our study site management strategies that minimize human disturbances, promote structural diversity in tree heights, and maintain relatively high densities of large-culmed bamboo may benefit populations of Prolemur simus.     

林木蛋白质组学研究进展

近年来,应用新的基因组学技术来研究林木生长发育以及林木对生物与非生物胁迫的反应已使得人们对林木生物学有了相当大的了解。蛋白质组学是林木生物学的重要内容。本文综述了林木蛋白质组学在群体遗传、遗传作图、逆境生理、组织器官以及木材形成等方面的研究进展,并简要介绍了林木蛋白质组数据库。最后展望了林木蛋白质组学的发展前景。     

Tree diseases and landscape processes: the challenge of landscape pathology

Forest pathology inherently involves a landscape perspective, because tree pathogens propagate according to heterogeneous spatial patterns of flow and isolation. Landscape pathology is a field that is now emerging from the transdisciplinary cooperation of forest pathologists with landscape ecologists. Here, we review recent broad-scale assessments of tree disease risk, investigations of site and host preferences for several root rot pathogens, and regional historical analyses of pathogen outbreak in plantations. Crucial topics include fragmentation effects on pathogen spread and geophysical features that predispose forest patches to disease expression. Recent methodological developments facilitate the spatially explicit analysis of reciprocal coarse-scale relationships among hosts and pathogens. Landscape pathology studies fill a significant research gap in the context of our understanding of sustainable forest management, the introduction of exotic organisms and how climate change might affect the spread of disease.     

Landscape configuration determines gene flow and phenotype in a flightless forest-edge ground-dwelling bush-cricket, Pholidoptera griseoaptera

Spatial configuration of habitats influences genetic structure and population fitness whereas it affects mainly species with limited dispersal ability. To reveal how habitat fragmentation determines dispersal and dispersal-related morphology in a ground-dispersing insect species we used a bush-cricket (Pholidoptera griseoaptera) which is associated with forest-edge habitat. We analysed spatial genetic patterns together with variability of the phenotype in two forested landscapes with different levels of fragmentation. While spatial configuration of forest habitats did not negatively affect genetic characteristics related to the fitness of sampled populations, genetic differentiation was found higher among populations from an extensive forest. Compared to an agricultural matrix between forest patches, the matrix of extensive forest had lower permeability and posed barriers for the dispersal of this species. Landscape configuration significantly affected also morphological traits that are supposed to account for species dispersal potential; individuals from fragmented forest patches had longer hind femurs and a higher femur to pronotum ratio. This result suggests that selection pressure act differently on populations from both landscape types since dispersal-related morphology was related to the level of habitat fragmentation. Thus observed patterns may be explained as plastic according to the level of landscape configuration; while anthropogenic fragmentation of habitats for this species can lead to homogenization of spatial genetic structure.     

Historical contributions of research on birds to behavioral neuroendocrinology

The contributions from bird research to behavioral neuroendocrinology are enormous and wide ranging. I have selected examples that illustrate how through the twentieth century to the present day, birds as experimental models continue to play a major role. Investigations on birds were pivotal in the beginnings of endocrinology, and have laid the foundations for present day developments in neurobiology, physiological ecology and evolutionary biology of neuroendocrine systems. The extensive literature on avian behavior also provides a unique and broad base for the field in general and future progress on a broad front can be expected. Molecular genetics in avian systems is advanced providing us with phylogenetic perspective allowing the comparisons of different avian populations that provide valuable models for integrative research.     

树木年轮在干扰历史重建中的应用

干扰是影响森林生态系统结构和功能的重要因子,重建森林群落干扰历史可以掌握干扰发生的机制和规律,对森林经营有重要意义。年轮记载了树木逐年的生长历史,利用年轮可以重建不同尺度上干扰的时空格局,具有重建历史长、定年准确和材料容易获得的优点,是森林动态历史研究不可替代的资料。干扰对树木个体的影响可以分为伤害干扰和生长干扰两种类型。不同类型的干扰的特点和对树木的生长影响不同所以重建方法也不同,对树干造成直接伤害的干扰可以利用树干的疤痕重建,如火灾和泥石流等;生长干扰对树木的生长势造成影响,可以通过识别年轮中的生长抑制和释放发生和持续的时间来确定干扰的时间和强度。但是对破坏性的干扰事件要通过群落中个体的建成时间高峰来判断。欧洲和北美地区利用树木年轮重建森林干扰历史的研究已经很广泛,主要包括火灾、虫灾、地质灾害和气象灾害等干扰类型,在中国利用年轮重建群落干扰的研究还处于起步阶段。本文探讨了应用树木年轮重建不同森林干扰事件的方法,总结了不同的重建方法和干扰重建取得的进展,并指出了以后研究的方向,为以后的干扰重建提供了参考。     

Diversity,composition, and structure of tropical dry forests in Central America

Tropical dry forests have been reduced to less than 0.1% of their original expanse on the Pacific side of Central America and are considered by some to be the most endangered ecosystem in the lowland tropics. Plots 1000 m² were established in seven tropical dry forests in Costa Rica and Nicaragua in order to compare levels of species richness to other Neotropical dry forest sites and to identify environmental variables associated with species richness and abundance. A total of 204 species and 1484 individuals 2.5 cm were encountered. Santa Rosa National Park was the richest site with the highest family (33), genera (69), and species (75) diversity of all sites. Species richness and forest structure were significantly different between sites. Fabaceae was the dominant tree and shrub family at most sites, but no species was repeatably dominant based on number of stems in all fragments of tropical dry forest. Central American dry forests had similar species richness when compared to other Neotropical forests. There was no correlation between forest cover within reserves, or precipitation and plant species richness. There was a significant correlation between anthropogenic disturbance (intensity and frequency of fire, wood collection, grazing) and total species richness, tree and shrub species richness, and liana abundance. These results suggest controlling levels on anthropogenic disturbance within reserves should be a high priority for resource managers in Central America. Further research in forest fragments which examine individual and a combination of disturbance agents would help clarify the importance of anthropogenic disturbance on species richness and abundance.