Genetic differentiation of Pacific cod Gadus macrocephalus in the Sea of Okhotsk and in the Bering Sea

Genetic differentiation of the Pacific cod Gadus macrocephalus was studied. Samples from six regions of the Sea of Okhotsk and the Bering Sea were analyzed with two mtDNA genetic markers-gene of cytochrome 1 and the control region (D-loop). Comparative analysis showed significant genetic differentiation between the two groups of samples. The first group included samples from Tauiskaya Bay and waters of Western Kamchatka. The second group consisted of the samples collected in the waters of the Iturup Island (Sea of Okhotsk), Northern Kurile Islands, Navarin region of the Bering Sea, and Anadyr Bay.     

Microsatellite Variability of Pacific Herring <Emphasis Type="Italic">Clupea pallasii</Emphasis> Valenciennes, 1847 from the Sea of Okhotsk and Bering Sea

The genetic variability of ten microsatellite loci was examined in samples of the herring from the Sea of Okhotsk and the Bering Sea. All loci were polymorphic; the expected heterozygosity estimates varied in the range of 0.3–94.3% (mean 66.7%). The degree of genetic differentiation of the herring was statistically significant (θ = 1.38%). The level of pairwise genetic differentiation F_ST was–0.002–0.046; R_ST was–0.003–0.166. Genetic differentiation of the herring from the Sea of Okhotsk and the Bering Sea correlated with the spatial-geographic structure of the species in the studied range on the basis of F_ST (P = 0.001).     

Preliminary data on the variability of three microsatellite loci in Pacific <Emphasis Type="Italic">Gadus macrocephalus</Emphasis> and Atlantic <Emphasis Type="Italic">G. morhua</Emphasis> cod (Gadidae)

Variability of microsatellite DNA loci Gmo3, Gmo34, and Gmo35 is studied in samples of Pacific cod Gadus macrocephalus and Atlantic cod G. morhua. The results show high values of identity of the samples within the North Pacific basin (0.9766–0.9924) and within the Northeast Atlantic basin (0.9580). Based on the pairwise assessment of genetic differentiation, the F _ST values are significantly different in all variants between the samples of Pacific and Atlantic cod (F _ST = 0.5235–0.6719, p < 0.001). Within the basins, the significant differences in the frequencies of main alleles are revealed in the loci Gmo3 and Gmo34 for the samples from the Pacific and Atlantic oceans, respectively.     

Comparative characteristics of the diet of Pacific halibut <Emphasis Type="Italic">Hippoglossus stenolepis</Emphasis> from different areas of the northwestern part of the Pacific Ocean

Food composition of Pacific halibut Hippoglossus stenolepis has been considered in three areas of the northwestern Pacific: in the western part of the Bering Sea, in Pacific waters off the northern Kuril Islands and southeastern Kamchatka, and waters off the southern Kuril Islands. The main food items in all studied regions were shrimp, cephalopods, and fish. It has been noted that fish offal plays a considerable role in the feeding of H. stenolepis in the western part of the Bering Sea. Changes in food composition in relation to fish growth, depth of catch, and sex of individuals have been analyzed; and differences in the composition of food items consumed by H. stenolepis in different parts of the studied areas have been considered.     

Brief morphological characteristics of cod <Emphasis Type="Italic">Gadus macrocephalus</Emphasis> (Gadidae) from coastal waters of the Komandor Islands

The results of the studies on morpho-biological characteristics of Pacific cod Gadus macrocephalus of Bering Island coastal waters (Komandor Islands) are presented. As assessed by several morphometric indices, the studied cod differs from the cod of the Bering Sea.     

Molecular genetic study of the beluga (<Emphasis Type="Italic">Delphinapterus leucas</Emphasis>: Cetacea,Monodontidae) summering in the southern Sea of Okhotsk as compared to North American populations

The structure of the left part of the mtDNA control region has been studied in Delphinapterus leucas captured in summer in the southern Sea of Okhotsk. The data have been compared with published results of similar studies on D. leucas at different sites along the American coast. A high specificity of maternal lineages of D. leucas from the southern Sea of Okhotsk has been demonstrated against the background of its historical connection with the form from the Pacific refugium that colonized the western Arctic region in postglacial time.     

Origin of juvenile chum salmon <Emphasis Type="Italic">Oncorhynchus keta</Emphasis> (Salmonidae) in the Sea of Okhotsk coastal waters off South Sakhalin

Based on the data of the analysis of distribution of juvenile chum salmon Oncorhynchus keta that were marked at salmon hatcheries in the southern part of the Sakhalin Island and Japan it has been established that their stocks in the Sea of Okhotsk coastal waters off South Sakhalin and Japan are of mixed origin. One part of the stock is composed of juveniles from hatcheries located in the southern part of Sakhalin, and the other part is composed of migrants from the waters adjacent to Japan. The first part is formed by juveniles both from hatcheries on the Sea of Okhotsk and Sea of Japan coasts of South Sakhalin. The second part is formed by juveniles reared at hatcheries in all regions of Japan: the Pacific and Sea of Okhotsk coasts of Honshu and Hokkaido, and from the Sea of Okhotsk coast of Hokkaido and Izmena (Nemuro) Strait. In July, in the Sea of Okhotsk coastal waters off South Sakhalin, the length and weight of most juvenile chum salmon of Japanese origin exceed 10 cm and 10 g, and juveniles of Sakhalin origin are always smaller than 10 cm and 10 g, which makes it possible to differentiate juveniles in trawl catches.     

Genetic diversity of Asian chum salmon <Emphasis Type="Italic">Oncorhynchus keta</Emphasis> (Salmonidae,Salmoniformes) and the dynamics of gene pools in Sakhalin populations under artificial reproduction

The estimates of genetic diversity in populations of chum salmon Oncorhynchus keta from different regions of Sakhalin Island, Iturup Island, and the Anadyr’ River were obtained on the basis of analysis of allozyme variability. These estimates together with our published earlier data on chum salmon from the Amur River basin and the rivers of the northern coast of the Sea of Okhotsk demonstrate pronounced regional genetic differentiation in the Asian part of the fish range. The intraregional level of interpopulation genetic diversity was maximum on Sakhalin Island (G _ST = 6.6%) and was small on Iturup Island (G _ST = 0.9%) and the northern coast of the Sea of Okhotsk (G _ST = 0.6%). Interpopulation genetic diversity of Sakhalin chum salmon was almost commensurable to the diversity of the whole pool of studied Asian populations (G _ST = 7.6%) and would be presented more completely in baselines assigned for genetic identification of mixed stocks. It was demonstrated that the character and degree of genetic differentiation between populations of chum salmon from the main hatcheries situated in different regions of the Sakhalin oblast and connected to one another by numerous transplantations of fertilized eggs did not change significantly during an approximately 20-year period of our observation, and this fact suggests low efficiency of such transplantations.     

The biogeochemical background and trace metal accumulation by brown algae of the genus <Emphasis Type="Italic">Fucus</Emphasis> in coastal waters of the Sea of Japan,the Sea of Okhotsk,and the White Sea

The ranges of background concentrations of Fe, Mn, Zn, Cu, and Cd in Fucus algae from the Sea of Japan, the Sea of Okhotsk, and the White Sea were determined. The lower background threshold of element concentration was calculated as Me₁₅–2MAD₁₅, the upper background threshold was determined as Me+2MAD. The upper background threshold of the metal contents in Fucus algae can be used as the maximum permissible regional concentration in assessing pollution levels of marine habitats. Comparison of the Me₁₅–2MAD₁₅ values showed that Fucus algae of the White Sea had increased Mn and decreased Cd concentrations compared to those in Pacific algae. The concentrations of Zn were higher in Fucus algae of the Sea of Japan than in macrophytes from the White Sea and the Sea of Okhotsk. The background concentration range of Fe in Fucus algae of the Sea of Japan was much narrower compared to that in their counterparts from the White Sea and the Sea of Okhotsk. The background metal concentrations in Fucus algae are specific to a sea region; their variations are connected not only with the trace element contents in abiotic components of the environment, but also with the functioning of coastal ecosystems.     

Specific features of spatial distribution of Pacific cod <Emphasis Type="Italic">Gadus macrocephalus</Emphasis> in waters off the eastern coast of the northern Kuril Islands and the southern extremity of Kamchatka

Spatial distribution of Pacific cod Gadus macrocephalus inhabiting waters off the eastern coast of the northern Kuril Islands and the southern part of Kamchatka has been studied. It is shown that the redistributions of densities of the aggregation of cod during the year occur mainly within the area under consideration. The absence of considerable migrations of cod is related, in particular, to sufficient food availability of abundant hydrobionts: for small-sized groups of cod, the main food are juvenile wall-eyed pollack Theragra chalcogramma and, for medium-sized and large-sized groups, its adult individuals and also Atka mackerel Pleurogrammus monopterygius and squid Belonella borealis.     

Distribution and some biological features of the Pacific sand lance <Emphasis Type="Italic">Ammodytes hexapterus</Emphasis> (Ammodytidae) in waters off Kamchatka in the Sea of Okhotsk

Data on the spatiotemporal distribution, size-age structure, individual fecundity, and food composition of the Pacific sand lance Ammodytes hexapterus in waters off Kamchatka in the Sea of Okhotsk in the summer months are provided. It is shown that, on the western Kamchatka shelf, this species is found uniformly at depths smaller than 100 m in the range of temperatures from ?0.83 to 9.45°C. Maximum catches (more than one to three thousand individuals per hour of trawling) are constantly recorded locally in the central part of the shelf (52°–56°N) in a comparatively narrow range of depths 20–60 m at temperatures of 1.5–8.0°C, mainly on sandy and sandy-pebbly grounds, which is related to a specific behavioral feature of A. hexapterus such as burrowing itself into the ground. It was established that in waters off Kamchatka in the Sea of Okhotsk, maximum sizes of A. hexapterus are 27 cm and 54 g (although its individuals with a length of 18–24 cm and a body weight of 20–40 g occur more frequently in catches); individual fecundity varies from 9.9 to 59.9 (on average, 29.7) thousand eggs. It was shown that, in waters off Kamchatka in the Sea of Okhotsk, unlike other habitats, the main food items of A. hexapterus (more than 95% by weight), besides copepods, are pelagic tunicates Oikopleura sp. and larval decapods at the megalope stage. With an increase in the size of A. hexapterus, the proportion of the former in its food decreases and, of the latter, increases.     

Summer-autumn ichthyoplankton of the Sea of Okhotsk and the Sea of Japan and special traits of feeding of fish larvae and fry in 2003–2004

In summer-autumn of 2003–2004, the ichthyoplankton of the Sea of Okhotsk comprised 35 species. In this period the most widely distributed and numerous were larvae of the lord Hemilepidotus gilberti, the Pacific stout sand lance Ammodytes hexapterus, and the Sakhalin dab Limanda sakhalinensis. The maximum catches of fish larvae were attributed to coastal waters off eastern Sakhalin and to the shelf of the northern part of the Sea of Okhotsk. In November of 2003, the ichthyoplankton of the Sea of Japan was represented by fish larvae belonging mainly to the boreal ichthyocomplex. The catches consisted predominantly of larvae of the arabesque greenling Pleurogrammus azonus, the ronquil Bathymaster derjugini, and the rockfish Sebastes owstoni. Fish larvae and fry in the northwestern part of the Sea of Japan were caught principally within 43°–45° N and 137°–139° E above the depth 1500–2000 m. The food spectrum of fish larvae in the Sea of Okhotsk and the Sea of Japan comprised over 20 plankters of various size belonging to seven taxa. Irrespective of fish species, the food items common of all fish were copepods Pseudocalanus minutus and Oithona similis. The daily rations were calculated for mass species (Hemilepidotus gilberti, Ammodytes hexapterus, Hexagrammos stelleri, Pleurogrammus azonus, Bathymaster derjugini, and Sebastes owstoni). The larvae of all considered species in the Sea of Japan and in the Sea of Okhotsk fed predominantly in the light period of the day.     

Mitochondrial DNA polymorphism of atlantic cod of the Barents and White seas

High level of intraspecific polymorphism of the mtDNA cytochrome b gene in the Atlantic cod Gadus morhua L. from the northeastern part of the species range (Barents and White seas) is detected. The absence of genetic differentiation between the samples from different areas of the Norwegian and Barents seas is shown, and the fact that these samples belong to the same population of Northeast Arctic cod is confirmed. Significant differences in the frequences of mitochondrial DNA haplotypes between the cod from the Barents and White seas, as well as from the northwestern part of the range, are found. The cod Gadus morhua kildinensis Derjugin, 1920 from Mogilnoye Lake and Gadus morhua marisalbi Derjugin, 1920 from the White Sea were revealed to have common haplotypes with the cod from the Barents Sea, confirming the recent origin of these forms from the Atlantic cod G. morhua.     

Population structure and variability of Pacific herring (<Emphasis Type="Italic">Clupea pallasii</Emphasis>) in the White Sea,Barents and Kara Seas revealed by microsatellite DNA analyses

Pacific herring, Clupea pallasii, have recently colonised the northeast Atlantic and Arctic Oceans in the early Holocene. In a relatively short evolutionary time, the herring formed a community with a complex population structure. Previous genetic studies based on morphological, allozyme and mitochondrial DNA data have supported the existence of two herring subspecies from the White Sea and eastern Barents and Kara Seas (C. p. marisalbi and C. p. suworowi, respectively). However, the population structure of the White Sea herring has long been debated and remains controversial. The analyses of morphological and allozyme data have previously identified local spawning groups of herring in the White Sea, whereas mtDNA markers have not revealed any differentiation. We conducted one of the first studies of microsatellite variation for the purpose of investigating the genetic structure and relationship of Pacific herring among ten localities in the White Sea, the Barents Sea and the Kara Sea. Using classical genetic variance-based methods (hierarchical AMOVA, overall and pairwise F _ST comparisons), as well as the Bayesian clustering, we infer considerable genetic diversity and population structure in herring at ten microsatellite loci. Genetic differentiation was the most pronounced between the White Sea (C. p. marisalbi) versus the Barents and Kara seas (Chesha–Pechora herring, C. p. suworowi). While microsatellite variation in all C. pallasii was considerable, genetic diversity was significantly lower in C. p. suworowi, than in C. p. marisalbi. Also, tests of genetic differentiation were indicating significant differentiation within the White Sea herring between sympatric summer- and spring-spawning groups, in comparison with genetic homogeneity of the Chesha–Pechora herring.     

Molecular genetic and karyological analysis of antlered sculpins of <Emphasis Type="Italic">Enophrys diceraus</Emphasis> group (Cottidae)

Molecular genetic and karyological analyses of antlered sculpin, Enophrys diceraus, from the Sea of Japan and the Sea of Okhotsk were carried out. The karyotype of this species was studied for the first time. On the basis of karyological analysis, it was established that E. diceraus from the Sea of Japan and the Sea of Okhotsk was polymorphic in terms of the number of chromosomes and their morphology (2n = 36, 35, and 37, NF = 40). It was suggested that the karyotype with 35 chromosomes could have been produced as a result of Robertsonian translocation; the karyotype with 37 chromosomes could have been produced by crossing of individuals with different number of chromosomes. On the basis of the molecular genetic analysis of the mitochondrial COI and 16S rRNA genes, considerable differences between E. diceraus from the Sea of Japan and the Sea of Okhotsk corresponding to the level of interspecies genetic variability were established. It is concluded that E. diceraus from the Sea of Japan belongs to another species, most likely, E. namiyei.     

Red king crab (<Emphasis Type="Italic">Paralithodes camtschaticus</Emphasis>) in the Barents Sea: A comparative study of introduced and native populations

Red king crab (Paralithodes camtschaticus) was introduced into the Barents Sea in the 1960–1970s. At present, it occurs along the coast from Hammerfest (Northern Norway) to the (northeastern coast of Kola Peninsula). We studied the polymorphism of a mitochondrial gene encoding cytochrome oxidase (COI) and five nuclear microsatellite loci in four samples from the Barents Sea and two donor populations from the Western Kamchatka and Primorye (Russian Pacifics). No decrease in the genetic diversity of the introduced populations was observed. The results of PCA103 locusanalysis but some samples from the Barents Sea significantly differed from the Pacific populations according to the test for population differentiation demonstrated that the sample from Varrangerfjord was highly significantly different from the other five populations. As no significant differences between the other samples were found at this locus. We consider it to be a marker for Varangerfjord population differentiation. Possible reasons of this phenomenon are discussed.     

Genetic diversity and structure analyses on the natural populations of diploids and triploids of tiger lily, <Emphasis Type="Italic">Lilium lancifolium</Emphasis> Thunb., from Korea,China, and Japan

Tiger lily, Lilium lancifolium Thumb. is an endemic species in Korea. Genetic structure and diversity of diploid and triploid tiger lily accessions were analyzed using SSRP and IRAP molecular markers. All genetic indices analyzed showed that the diploids hold higher genetic variations compared to the triploids which were collected from Korea, China, and Japan. All variations found in triploids were also found in diploids to support the autotriploidy of L. lancifolium. It was also revealed that the triploid populations have experienced population regrowth from small population after population bottleneck. The population and phylogenetic analyses showed that analyzed tiger lilies were partitioned into three populations, Pop 1 from West Sea of Korean Peninsula, Pop 2 from South Sea of Korean Peninsula and Pop 3 of triploids in which many accessions of West Sea and South Sea were admixed in each partitioned group. Although the level of population differentiation is not extensive, F_ST analysis revealed some level of differentiation among the three populations. The analyses of genetic structure and phylogenetic dendrogram revealed admixture in some accessions among populations. All the results obtained in our analyses imply that autotriploid tiger lilies were originated from a small number of accessions of diploid L. lancifolium.     

The karyotype of the great sculpin, <Emphasis Type="Italic">Myoxocephalus polyacanthocephalus</Emphasis> (Pallas, 1814) (Pisces: Cottidae), from the Russian part of the species range

The karyotype of the great sculpin, Myoxocephalus polyacanthocephalus (Pallas, 1814) (Pisces: Cottidae) from the Sea of Okhotsk and the Sea of Japan has been studied for the first time. The karyotype is stable; it consists of 40 chromosomes (4 metacentric, 2 submeta-subtelocentric, 20 subtelocentric, and 14 acrocentric chromosomes); the number of chromosomal arms is 44 + 2. Nucleolar organizer regions (NOR) are found in the telomeric region of the arm in one homologue of a pair of small metacentric chromosomes, using the Ag-NOR banding technique. A comparative analysis of the karyotype of M. polyacanthocephalus and the karyotypes of other Myoxocephalus species (M. stelleri, M. brandtii, M. jaok, M. ochotensis, and M. scorpius) has been carried out based on the main karyotype characters, as well as on the number and localization of NORs. The identified differences make it possible to differentiate the studied species, whereas the general traits indicate their taxonomic proximity.     

Otolith variation in Pacific herring (<Emphasis Type="Italic">Clupea pallasii</Emphasis>) reflects mitogenomic variation rather than the subspecies classification

Pacific herring (Clupea pallasii) is divided into three subspecies: two in northeast Europe and one in the north Pacific Ocean. Genetic studies have indicated that the populations in northeast Europe have derived from the northwest Pacific herring recently, or during the last 10–15 kyr, and that they are distinct from the population in the northeast Pacific. In addition, hybridization between the Pacific herring and the Atlantic herring has been documented. Otolith variation has been considered to be largely affected by environmental variation, but here we evaluate whether the genetic differentiation is reflected in otolith shape differences. A clear difference in otolith shape was observed between the genetically differentiated herring species Clupea harengus from the Atlantic and C. pallasii. The otolith shape of C. p. suworowi in the Barents Sea was different from the shape of C. pallasii in northern Norway and C. p. pallasii from the Pacific. Populations of C. p. pallasii, sampled east and west of the Alaska Peninsula, which belong to two genetically different clades of the C. p. pallasii in the Pacific Ocean, show a clear difference in otolith shape. C. p. suworowi and the local C. pallasii peripheral population in Balsfjord in northern Norway are more similar to the northwest Pacific herring (C. p. pallasii) than to the northeast Pacific herring (C. p. pallasii), both genetically and in otolith shape. The Balsfjord population, known to be influenced by introgression of mtDNA from the Atlantic herring, does not show any sign of admixture in otolith shape between the two species. A revised classification, considering the observed genetic and morphological evidence, should rather group the northwest Pacific herring in the Bering Sea together with the European populations of C. pallasii than with the northeast Pacific herring in the Gulf of Alaska.     

Revision of the genus <Emphasis Type="Italic">Melamphaes</Emphasis> (Melamphaidae). 5. Oligo-raker species: <Emphasis Type="Italic">M. indicus</Emphasis>, <Emphasis Type="Italic">M. eurous</Emphasis>, and <Emphasis Type="Italic">M. typhlops</Emphasis>

Three oligo-raker species (?19 rakers on the first gill arch) of the genus Melamphaes out of the “M. typhlops” group are considered. The validity of M. indicus Ebeling is restored. This species inhabits equatorial and tropical waters of the Indian Ocean and the western part of the Pacific Ocean. M. eurous sp. n., which is related to M. indicus, is described from equatorial waters of the eastern part of the Pacific Ocean. M. typhlops (Lowe) inhabiting the northern part of the Atlantic Ocean, from the equatorial zone about to 45° N, is redescribed.