泌尿系感染产ESBLs大肠埃希菌基因分型

目的 了解深圳市人民医院临床泌尿系感染标本中产ESBLs大肠埃希菌的基因型特点.方法 收集近几年深圳市人民医院临床尿液标本中非重复的产ESBLs大肠埃希菌43株,PCR分别扩增菌株的TEM、SHV、CTX-M基因,阳性株进行DNA测序分型.结果 43株产ESBLs大肠埃希菌中40株CTX-M基因阳性,分别为CTX-M-14型36株,CTX-M-9型2株,CTX-M-15型2株,其中17株CTX-M-14型菌株检出TEM-1基因;所有菌株均未检出SHV基因.结论 本地区致泌尿系感染产ESBLs大肠埃希菌中,CTX-M-14型为主.     

产超广谱β-内酰胺酶细菌耐药性基因型分析

检测我院产超广谱β-内酰胺酶(ESBLs)大肠埃希菌和肺炎克雷伯菌的耐药性和基因型。表型确定临床分离产ESBLs的大肠埃希菌和肺炎克雷伯菌56株,应用PCR基因扩增技术及双脱氧DNA测序方法,分别对TEM、SHV、CTX-M-1、CTX-M-2和CTX-M-9编码基因进行分析。产酶菌株对亚胺培南、美洛培南、阿米卡星、头孢吡肟耐药性较低,对其他16种抗生素耐药性较高。在56株菌株中有50株为CTX-M型,占89%,34株为TEM型(60.7%),20株SHV型(35.7%);其中CTX-M-9型共计39株占78%,CTX-M-1型19株占38%,CTX-M-2型16株占32%。产ESBLs大肠埃希菌和肺炎克雷伯菌的耐药性值得关注,主要临床流行基因型是CTX-M型。     

血流感染大肠埃希菌和肺炎克雷伯菌的ESBLs基因分型

目的 了解深圳市人民医院致血流感染大肠埃希菌和肺炎克雷伯菌超广谱β-内酰胺酶(ESBLs)的检出率及基因型特点.方法 收集来自临床血液培养标本中的大肠埃希菌和肺炎克雷伯菌115株,采用ESBLs表型确证试验检测菌株的ESBLs,应用PCR扩增产ESBLs菌株TEM、SHV和CTX-M基因,并对阳性扩增产物进行DNA测序分型.结果 115株菌中共检出ESBLs阳性38株,检出率为33.0％;其中大肠埃希菌阳性25株,肺炎克雷伯菌阳性13株.25株产酶肠埃希菌中18株检出CTX-M-14基因,3株检出CTX-M-9基因.13株产酶肺炎克雷伯菌均检出SHV型基因,其中SHV-12阳性10株,SHV-2阳性2株,SHV-59阳性1株;该13株产酶菌中10株同时被检出含CTX-M-14或CTX-M-13基因.结论 该院致血流感染大肠埃希菌产ES-BLs以CTX-M-14为最主要基因型,肺炎克雷伯产ESBLs最常见为SHV-12和CTX-M-14型.     

重症监护病房产ESBLs菌的基因分型

目的了解深圳市人民医院重症监护病房分离菌超广谱β-内酰胺酶（ESBLs）的检出率及其基因型分布情况。方法收集来自重症监护病房大肠埃希菌和肺炎克雷伯菌分离株48株,采用CLSI推荐的表型确证方法筛选出ESBLs株,并利用PCR及DNA测序法分析产酶菌株的ESBL基因型。结果（1）48分离株菌中共检出产ESBLs菌24株,阳性率为50.0%。（2）产酶菌中93.8%（15/16）的大肠埃希菌和87.5%（7/8）的肺炎克雷伯菌分别检出CTX-M基因;其中72.7%（16/22）为CTX-M-14。6株肺炎克雷伯菌检出SHV基因,其中3株为SHV-11型,另3株为SHV-12型,6株含SHV基因的肺炎克雷伯菌中5株合并CTX-M基因。而所有大肠埃希菌株均未检出SHV基因。所有产酶菌中,分别有10株大肠埃希菌和2株肺炎克雷伯菌检出TEM-1基因,其中1株大肠埃希菌只检出TEM-1基因,未检出SHV型或CTX-M型基因。结论重症监护病房分离菌ESBLs检出率高,以CTX-M-14为主要基因型。     

产ESBLs大肠埃希菌和肺炎克雷伯菌呼吸道分离株的基因分型及耐药性分析

目的了解深圳市人民医院大肠埃希菌和肺炎克雷伯菌呼吸道分离株超广谱β-内酰胺酶(ESBLs)的基因型特点及耐药性。方法采用临床实验室标准化协会(CLSI)推荐的表型确证试验筛选出该院呼吸道分离株产ESBLs大肠埃希菌和肺炎克雷伯菌共78株。应用PCR及DNA测序法分析产酶株的TEM、SHV及CTX-M3种β-内酰胺酶基因,用琼脂稀释法测定细菌最低抑菌浓度(MIC)。结果 37株产ESBLs大肠埃希菌中,28株(75.7%)检出CTX-M-14基因,4株(10.8%)检出CTX-M-9基因,其他型较少见。41株肺炎克雷伯菌中,25株(61.0%)检出SHV-12基因,4株(9.8%)检出SHV-11基因,其他SHV型较少。20株(48.8%)检出CTX-M-14基因,5株(12.2%)检出CTX-M-3基因,其他型较少。产ESBL菌株均对亚胺培南敏感,对氨苄西林/舒巴坦的耐药率最高(90%),对其他抗生素有不同程度耐药。结论深圳市人民医院呼吸道分离的产ESBLs大肠埃希菌以CTX-M-14型为主,产酶肺炎克雷伯菌以SHV-12和CTX-M-14型为最常见。     

医院与社区获得性感染大肠埃希菌耐消毒剂基因比较分析

目的 比较在本地区医院感染与社区获得性大肠埃希菌中耐消毒剂基因的流行情况.方法 收集从临床标本中分离出的大肠埃希菌112株,根据感染途径不同,将其分为医院与社区获得性两组,用PCR方法检测耐消毒剂基因qacE△1,并进行组间检出率比较.结果 本地区医院与社区获得性感染大肠埃希菌耐消毒剂基因的携带率分别为58.1％(43/74)和23.7％ (9/38),组间比较差异有统计学意义(P ＜0.05);74株医院获得性大肠埃希菌中,产ESBL率为71.6％(53/74),38株社区获得性大肠埃希菌中,产ESBL率为39.5％ (15/38).医院与社区获得性产ESBL大肠埃希菌耐消毒剂基因qacE△1检出率分别为64.2％(34/53)与6.7％(1/15),组间比较差异亦有统计学意义(P＜0.01).结论 医院获得性感染大肠埃希菌耐消毒剂基因的携带率高于社区获得性大肠埃希菌,产ESBL阳性菌株的携带率显著高于产ESBL阴性菌株,这可能是由于医院环境中消毒剂选择压力和/或携带耐消毒剂基因的菌株在医院内水平传播速度较快的结果.     

产ESBLs大肠埃希菌的AmpC基因型分析

目的 了解深圳市人民医院产超广谱β-内酰胺酶(ESBLs)大肠埃希菌合并产AmpC酶的状况及基因型特点.方法 从近几年深圳市人民医院产ESBLs大肠埃希菌临床菌株中,筛选出对头孢西丁耐药菌株51株,PCR分别扩增菌株的TEM、SHV、CTX-M基因,同时应用多重PCR检测菌株的AmpC酶基因,序列测定PCR阳性产物以确定其基因亚型.结果 51株菌中有49株至少检出一种ESBLs或AmpC基因.单ESBLs基因阳性菌株37株(72.5％),单AmpC基因阳性4株(7.8％),合并ESBLs和AmpC基因阳性的8株(15.6％).共有41株(80.4％)含CTX-M-14基因,4株含CTX-M-15,其他基因型ESBLs较少.2株检出两种ESBLs基因;一株同时检三种ESBLs基因.检出AmpC基因的菌株12株,其中10株为DHA-1型,2株为CMY-2型;其中6株DHA-1型及2株CMY-2型菌同时检出CTX-M-14基因.结论 该院头孢西丁耐药产ESBLs大肠埃希菌中大多数为单产ESBLs菌,主要为CTX-M-14型;少数同时产生ESBLs和AmpC酶,AmpC酶以DHA-1型为最常见.     

肿瘤患者医院感染产ESBLS大肠埃希菌调查及基因分析

目的探讨肿瘤患者医院感染产超广谱β-内酰胺酶(extended spectrum beta-lactamase,ESBLs)大肠埃希菌的临床特点,并分析其基因型特征。方法对2014年3月~2016年10月我院肿瘤患者498株临床标本中分离出的338株产ESBLs大肠埃希菌的临床分布进行分析,并比较产与非产ESBLs菌株对19种抗菌药物的耐药率,同时随机抽取338株中的60株应用聚合酶链反应(polymerase chain reaction,PCR)分别扩增ESBLs基因(TEM、CTX-M和SHV)型别。结果 498株大肠埃希菌中产ESBLs 338株(67.87%),标本类型以尿液标本为多(101株,29.88%),临床科室分布中妇瘤科最多(94株,27.81%)。产与非产ESBLs大肠埃希菌对亚胺培南及美罗培南耐敏感性高(耐药率为零),而产ESBLs大肠埃希菌的耐药率大多数均高于非产ESBLs大肠埃希菌,差异均有统计学意义(P0.05)。PCR扩增后基因测序显示,55株为TEM(91.67%),42株为CTX-M1(70.00%),42株为CTX-M13(70.00%),24株为SHV(40.00%),其中携带2种或2种以上耐药基因的有53株(88.33%)。结论本研究肿瘤患者医院感染产ESBLs大肠埃希菌主要标本以尿液标本为主,重点分布在妇瘤科;基因型以TEM、CTX-M1、CTX-M13型为主,并呈现多重耐药趋势。     

新生儿科病房产ESBLs分离株耐药基因分型

目的了解我院新生儿科病房产超广谱β-内酰胺酶(ESBLs)大肠埃希菌和肺炎克雷伯菌的流行情况及基因型特点。方法采用美国国家临床实验室标准化委员会(NCCLS)推荐的表型确证方法,对分离自广东省妇儿医院新生儿科病房的50株大肠埃希菌和肺炎克雷伯菌进行ESBLs检测。应用PCR法分别扩增产酶菌的TEM、SHV和CTX-M基因,并进行DNA测序及分型。结果50株细菌中,检出ESBLs阳性菌22株,检出率为44%,其中大肠埃希菌5株,肺炎克雷伯菌17株。5株大肠埃希菌中,3株同时检出CTX-M-14和TEM-1,1株检出CTX-M-14,1株3种基因均未检出。17株肺炎克雷伯菌中7株同时检出CTX-M-14型和SHV-12,9株只检出SHV-12,1株只检出CTX-M-14。结论SHV-12型ESBLs是新生儿科病房最常见的ESBLs,其次为CTX-M-14。     

大肠埃希菌临床分离株CTX—M型超广谱β-内酰胺酶基因型研究

目的了解我院临床分离大肠埃希菌产CTX-M型超广谱β-内酰胺酶（ESBLs）的基因型分布情况。方法收集我院临床分离大肠埃希菌200株,按美国临床和实验室标准协会2006年制订的标准确定ESBLs表型。PCR扩增CTX—M耐药基因,扩增产物测序,测序结果与GenBank比对,确定CTX．M基因型。结果200株大肠埃希菌中有94株ESBLs阳性,其中92株CTX-M基因扩增阳性。测序结果表明,大肠埃希菌CTX．M基因型以CTX．M14为主,占67．4％,同时CTX—M3占27．2％,5株未分型。结论大肠埃希菌中产CTX．M型ESBLs的检出率较高,其基因型以CTX．M14和CTX．M3型为主。     

健康老年人肠道中肠杆菌科细菌的分布及其耐药机制研究

目的分析健康老年人肠道菌群,探讨本地区健康老年人肠道中肠杆菌科细菌的分布及其耐药情况。方法取粪便标本分别接种于血平板、SS平板、麦康凯平板进行细菌培养,用全自动微生物鉴定仪和质谱仪鉴定细菌到种,采用K-B纸片扩散法进行药敏试验测定其耐药表型,PCR扩增测序再与GenBank上比对其耐药基因。结果在175例研究对象中,有59. 4%（104/175）的健康老年人肠道中只有一种肠杆菌科细菌;细菌种类以大肠埃希菌为主,占88.0%。大肠埃希菌对IPM、CTX、AMC.F0X和CIP的耐药率分别为0% ,27.9%、4. 5% ,1.3%和37. 0% ;肺炎克雷伯菌对IPM、CTX、AMC、FOX和CIP的耐药率分别为1.9%、5.8%、1.9%、1.9%和3.8%;两者相比较,大肠埃希菌对CTX、CIP的耐药率明显高于肺炎克雷伯菌（P〈0. 05）。ESBLs总携带率为17. 4%,其中大肠埃希菌的携带率（24.0%）明显高于肺炎克雷伯菌（5.8%） （P 〈0.05）;产ESBLs菌株的基因型,均为CTX-M型酶,其中以CTX-M-14最多,占57. 8%。结论本研究获得了老年人肠道肠杆菌科细菌的分布特点及其耐药机制。健康老年人肠道中肠杆菌科细菌部分抗生素的耐药率比浙江省内医院肠杆菌科细菌统计结果低,这主要是和其ESBLs携带率较低相关;但同时也已有泛耐药细菌的出现,应提高警惕。     

Antimicrobial Resistance and Molecular Epidemiology of Escherichia coli Causing Bloodstream Infections in Three Hospitals in Shanghai,China

Escherichia coli (E. coli) is one of the most frequent and lethal causes of bloodstream infections (BSIs). We carried out a retrospective multicenter study on antimicrobial resistance and phylogenetic background of clinical E. coli isolates recovered from bloodstream in three hospitals in Shanghai. E. coli isolates causing BSIs were consecutively collected between Sept 2013 and Sept 2014. Ninety isolates randomly selected (30 from each hospital) were enrolled in the study. Antimicrobial susceptibility testing was performed by disk diffusion. PCR was used to detect antimicrobial resistance genes coding for β-lactamases (TEM, CTX-M, OXA, etc.), carbapenemases (IMP, VIM, KPC, NDM-1 and OXA-48), and phylogenetic groups. eBURST was applied for analysis of multi-locus sequence typing (MLST). The resistance rates for penicillins, second-generation cephalosporins, fluoroquinolone and tetracyclines were high (>60%). Sixty-one of the 90 (67.8%) strains enrolled produced ESBLs and no carbapenemases were found. Molecular analysis showed that CTX-M-15 (25/61), CTX-M-14 (18/61) and CTX-M-55 (9/61) were the most common ESBLs. Phylogenetic group B2 predominated (43.3%) and exhibited the highest rates of ESBLs production. ST131 (20/90) was the most common sequence type and almost assigned to phylogenetic group B2 (19/20). The following sequence types were ST405 (8/90) and ST69 (5/90). Among 61 ESBL-producers isolates, B2 (26, 42.6%) and ST131 (18, 29.5%) were also the most common phylogenetic group and sequence type. Genetic diversity showed no evidence suggesting a spread of these antimicrobial resistant isolates in the three hospitals. In order to provide more comprehensive and reliable epidemiological information for preventing further dissemination, well-designed and continuous surveillance with more hospitals participating was important.     

Resistance to broad-spectrum antibiotics in aquatic systems: anthropogenic activities modulate the dissemination of bla(CTX-M)-like genes

We compared the resistomes within polluted and unpolluted rivers, focusing on extended-spectrum beta-lactamase (ESBL) genes, in particular bla(CTX-M). Twelve rivers from a Portuguese hydrographic basin were sampled. Physicochemical and microbiological parameters of water quality were determined, and the results showed that 9 rivers were classified as unpolluted (UP) and that 3 were classified as polluted (P). Of the 225 cefotaxime-resistant strains isolated, 39 were identified as ESBL-producing strains, with 18 carrying a bla(CTX-M) gene (15 from P and 3 from UP rivers). Analysis of CTX-M nucleotide sequences showed that 17 isolates produced CTX-M from group 1 (CTX-M-1, -3, -15, and -32) and 1 CTX-M that belonged to group 9 (CTX-M-14). A genetic environment study revealed the presence of different genetic elements previously described for clinical strains. ISEcp1 was found in the upstream regions of all isolates examined. Culture-independent bla(CTX-M)-like libraries were comprised of 16 CTX-M gene variants, with 14 types in the P library and 4 types in UP library, varying from 68% to 99% similarity between them. Besides the much lower level of diversity among CTX-M-like genes from UP sites, the majority were similar to chromosomal ESBLs such as bla(RAHN-1). The results demonstrate that the occurrence and diversity of bla(CTX-M) genes are clearly different between polluted and unpolluted lotic ecosystems; these findings favor the hypothesis that natural environments are reservoirs of resistant bacteria and resistance genes, where anthropogenic-driven selective pressures may be contributing to the persistence and dissemination of genes usually relevant in clinical environments.     

产超广谱β-内酰胺酶大肠埃希菌和肺炎克雷伯菌blaCTX-M基因的检测

目的了解产CTX-M型超广谱β-内酰胺酶 (ESBLs) 大肠埃希菌和肺炎克雷伯菌在深圳市人民医院的分布情况.方法应用美国国家临床实验室标准化委员会(NCCLS)推荐的表型确证试验,从2000年6月～2003年8月该院临床标本分离株中筛选出不重复的产ESBLs菌株215株,其中大肠埃希菌151株,肺炎克雷伯菌64株,应用聚合酶链反应(PCR)检测所有产ESBLs株的bla(CTX-M)基因.结果 PCR结果显示,大肠埃希菌bla(CTX-M)基因阳性率为92.1%(139/151),肺炎克雷伯菌的阳性率为65.6%(42/64).bla(CTX-M)基因阳性菌株主要来源于临床送检尿和痰标本,并广泛分布于20多个临床科室.结论该院临床分离的大肠埃希菌和肺炎克雷伯菌产生的ESBL大多数为CTX-M型,该类酶广泛分布于各临床科室,需引起重视.     

Diversity of CTX-M beta-lactamases and their promoter regions from Enterobacteriaceae isolated in three Parisian hospitals

Nine clinical isolates of Enterobacteriaceae (six Escherichia coli and three Proteus mirabilis) isolated in three Parisian hospitals between 1989 and 2000 showed a particular extended-spectrum cephalosporin-resistance profile characterized by resistance to cefotaxime and aztreonam but not to ceftazidime. CTX-M-1, CTX-M-2, CTX-M-9, CTX-M-14 and two novel plasmid-mediated CTX-M beta-lactamases (CTX-M-20, and CTX-M-21) were identified by polymerase chain reaction and isoelectric focusing (pI>8) and were associated in eight cases with TEM-1 (pI=5.4) or TEM-2 (pI=5.6) beta-lactamases. We used internal ISEcp1 and IS26 forward primers and the CTX-M consensus reverse primer to characterize the CTX-M beta-lactamase promoter regions and showed their high degree of structure diversity. We found upstream of some bla(CTX-M) genes, a 266-bp sequence 100% identical to the sequence upstream of the Kluyvera ascorbata beta-lactamase gene, suggesting that this chromosomal enzyme is the progenitor of the CTX-M-2/5 cluster.     

Atomic resolution structures of CTX-M beta-lactamases: extended spectrum activities from increased mobility and decreased stability

Extended spectrum beta-lactamases (ESBLs) confer bacterial resistance to third-generation cephalosporins, such as cefotaxime and ceftazidime, increasing hospital mortality rates. Whereas these antibiotics are almost impervious to classic beta-lactamases, such as TEM-1, ESBLs have one to four orders greater activity against them. The origins of this activity have been widely studied for the TEM and SHV-type ESBLs, but have received less attention for the CTX-M beta-lactamases, an emerging family that is now the dominant ESBL in several regions. To understand how CTX-M beta-lactamases achieve their remarkable activity, biophysical and structural studies were undertaken. Using reversible, two-state thermal denaturation, it was found that as these enzymes evolve a broader substrate range, they sacrifice stability. Thus, the mutant enzyme CTX-M-16 is eightfold more active against ceftazidime than the pseudo-wild-type CTX-M-14 but is 1.9 kcal/mol less stable. This is consistent with a "stability-activity tradeoff," similar to that observed in the evolution of other resistance enzymes. To investigate the structural basis of enzyme activity and stability, the structures of four CTX-M enzymes were determined by X-ray crystallography. The structures of CTX-M-14, CTX-M-27, CTX-M-9 and CTX-M-16 were determined to 1.10 Angstroms, 1.20 Angstroms, 0.98 Angstroms and 1.74 Angstroms resolution, respectively. The enzyme active sites resemble those of the narrow-spectrum TEM-1 and SHV-1, and not the enlarged sites typical of ESBL mutants such as TEM-52 and TEM-64. Instead, point substitutions leading to specific interactions may be responsible for the improved activity against ceftazidime and cefotaxime, consistent with observations first made for the related Toho-1 enzyme. The broadened substrate range of CTX-M-16 may result from coupled defects in the enzyme's B3 strand, which lines the active site. Substitutions Val231-->Ala and Asp240-->Gly, which convert CTX-M-14 into CTX-M-16, occur at either end of this strand. These defects appear to increase the mobility of B3 based on anisotropic B-factor analyses at ultrahigh resolution, consistent with stability loss and activity gain. The unusually high resolution of these structures that makes such analyses possible also makes them good templates for inhibitor discovery.     

亚抑菌浓度头孢他啶对大肠埃希菌生物膜形成的影响与其耐药性相关性研究

目的:探讨亚抑菌浓度头孢他啶对大肠埃希菌生物膜形成的影响与细菌耐药性、超广谱β-内酰胺酶(ESBLs)产生及ESBLs基因分型的相关性,为临床生物膜感染的治疗和抗生素的合理使用提供理论依据。方法:大肠埃希菌最低抑菌浓度(MIC)检测采用琼脂平板倍比稀释法,超广谱β-内酰胺酶(ESBLS)表型确证实验采用双纸片协同法,大肠埃希菌ESBLs基因检测采用PCR扩增,生物膜形成能力检测采用96孔板结晶紫染色法。结果:50株大肠埃希菌临床株对青霉素类、氟喹诺酮类、头孢哌酮及复方新诺明具有较高的耐药性,而对阿米卡星、哌拉西林/他唑巴坦敏感性较高。所有菌株均对碳青霉烯类抗菌药物敏感。31株大肠埃希菌为ESBLs阳性菌株。CTX-M、TEM、OXA、SHV和VEB基因阳性率分别为93.5%、83.9%、19.4%、16.1%和3.2%。亚-MIC头孢他啶对9株(18.0%)大肠埃希菌生物膜形成具有抑制作用。亚-MIC头孢他啶对大肠埃希菌生物膜形成的影响与细菌耐药性和ESBLs均无相关性(P0.05)。结论:亚-MIC头孢他啶对大肠埃希菌生物膜形成的调控作用与细菌耐药性、产ESBLs及ESBLs基因分型均无相关性。