小麦K型及V型细胞质雄性不育系线粒体DNA的比较分析

采用ＲＦＬＰ和ＲＡＰＤ技术对具有相同核遗传背景的小麦Ｋ型不育系Ｋ１４９Ａ,Ｖ型不育系Ｖ１４９Ａ及相应保持系１４９Ｂ的线粒体ＤＮＡ进行了比较分析。结果表明它们之间线粒体ＤＮＡ的结构显著不同,ａｔｐＡ,ａｔｐ９,ｃｏｘⅡ,ｃｏｂ等线粒体功能基因有组织结构上的差异。     

3种小麦细胞质雄性不育系及其杂种线粒体DNA的RFLP分析

对细胞质分别来源于提莫菲维（Ｔ．ｔｉｍｏｔｈｅｅｖｉｉ）,粘果山羊草（Ａｅ．ｋｏｔｓｃｈｙｉ）,偏凸山羊草（Ａｅ．ｖｅｎｙｒｉｃｏｓａ）的３种普通小麦的雄性不育系,相应保持系和恢复系及其上的ｍｔＤＮＡ用１２个线粒体基因探针进行了ＲＦＬＰ分析,结果为：⑴Ｔ、Ｋ、Ｖ型不育系的ｍｔＤＮＡ在组织结构上存在显著差异;⑵Ｔ、Ｋ、Ｖ不育系的ｍｔＤＮＡ与共同的保持系间显著不同,失测ｍｔＤＮＡ与小麦ｃｍｓ有关;⑶在     

甘蓝型油菜细胞质雄性不育系301A线粒体不育基因片段分析

提取细胞质雄性不育系301A、212A和'陕3A'及其共同保持系'中双2号'线粒体DNA,根据已报道的Polima油菜细胞质雄性不育相关基因orf224序列设计引物,对3种不同来源的线粒体DNA PCR产物进行分析.结果显示,这3种甘蓝型油菜细胞质雄性不育材料所获得片段序列完全一致,且与已报道的Polima油菜线粒体中细胞质雄性不育相关基因orf224序列完全相同.研究表明,不育材料301A从分子角度讲属于Polima系统,不育系301A、212A和'陕3A'线粒体中与细胞质雄性不育相关线粒体基因片段orf224具有高度同源性.     

小麦K型及V型细胞质雄性不育系线粒体DNA的比较分析

采用RFLP（restrictionfragmentlengthpolymorphism）和RAPD（radomlyamplifiedpolymorphicDNA）技术对具有相同核遗传背景的小麦K型不育系K149A、V型不育系V149A及相应保持系149B的线粒体DNA进行了比较分析。结果表明它们之间线粒体DNA的结构显著不同,atpA,atp9,coxII,cob等线粒体功能基因有组织结构上的差异。推测线粒体DNA是小麦K、V型雄性不育系胞质不育困子的载体。但由于不育系与保持系间线粒体DNA差异甚大,难以确定究竞哪些差异确与雄性不育有关。仅仅比较不育系和保持系间线粒体DNA的差异是限制本领域取得突破性进展的症结所在。基于“核质工作”的思路,把“雄性不育-育性恢复”作为一个整体来考虑,并重视比较不育系和杂种F1代之间线粒体DNA的结构和表达的差异,所得结果对寻找和鉴定cms因子,进而阐明cms的形成机理有积极意义。     

普通小麦三种细胞质雄性不育系线粒体DNA的比较研究

对细胞质分别来源于粘果山羊草（Ａｅ．ｋｏｔｓｃｈｙｉ）、偏凸山羊草（Ａｅ．ｖｅｎｔｒｉｃｏｓａ）、提莫菲维（Ｔ．ｔｉｍｏｐｈｅｅｖｉ）的３种普通小麦雄性不育系,其相应保持系和共有的一种恢复系的ｍｔＤＮＡ进行了ＲＦＬＰ比较分析。发现Ｋ型和Ｖ型不育系的ｍｔＤＮＡ在组织结构上不同于Ｔ型,说明Ｋ、Ｖ型不育系是有别于Ｔ型的两种新不育类型。Ｋ型、Ｖ型不育系的ｍｔＤＮＡ与保持系和恢复系显著不同,推测ｍｔＤＮＡ与小麦细胞质雄性不育性有关。实验同时发现Ｔ型不育系与其保持系的ｍｔＤＮＡ非常相似,对这种相似性的原因进行了讨论。     

普通小麦细胞质雄性不育系及其保持系线粒体DNA和RAPD分析

应用随机扩增多态ＤＮＡ（Ｒａｎｄｏｍ ａｍｐｌｉｆｉｅｄ ｐｏｌｙｍｏｒｐｈｉｃ ＤＮＡｓ,ＲＡＰＤ）技术,对普通小麦细胞质雄性不育系（Ａ）及其保持系（Ｂ）线粒体基因组（ｍｉｔｏｃｈｏｎｄｒｉａｌ ｇｅｎｏｍｅ）的指纹图谱进行了分析。共使用引物４１个,其中２０个引物得到了扩增产物,部分引物扩增结果表现多态性。说明线粒体ＤＮＡ（ｍｉｔｏｃｈｏｎｄｒｉａｌ ＤＡＮ,ｍｔ,ＤＮＡ）序列在不育系和保持系之     

BT型细胞质雄性不育水稻及其三系的线粒体DNA研究

用RAPD技术对BT型水稻胞质雄性不育系秀A及其保持系秀B、恢复系湘晴以及杂种F1代的线粒体DNA进行了比较分析。结果表明不育系与其保持系间存在显著差异;不育系与其F1之间mtDNA也存在差异。在引物OPJ－08的扩增产物中,秀A扩增出一条分子量为800bp的多态性片段,在引物OPK－10的扩增产物中,杂种F1扩增出一条分子量为900bp的片段。把这两片段回收、克隆并制备探针,OPJ－08800的Southern杂交结果显示不育系与其F1杂交图谱存在多态性;OPK－10900的Suthern杂交结果显示不育系与其保持系同存在差异。推测这两片段与育性可能有一定的联系。     

荧光标记DNA扩增片段长度多态性方法的改进

采用常规PCR试剂和合成的接头和引物,其中MseⅠ引物为荧光标记物FAM标记,并对扩增片段长度多态性(AFLP)程序进行了改进,优化了PCR反应和电泳条件,建立了一个新的、有效的反应体系,降低了实验费用,经比较实验结果与AFLP荧光标记试剂盒的实验效果一致.     

D^2型小麦细胞质雄性不育系及其保持系和恢复系线粒体DNA的比较研究

ｍｓＤ２－ＣＡ８０５７是新育成的具有粗厚山羊草（Ａｅ．ｃｒａｓａ,６ｘ）胞质的Ｄ２型小麦细胞质雄性不育系。采用ＲＦＬＰ和ＲＡＰＤ方法对该不育系及其具有普通小麦（Ｔ．ａｅｓｔｉｖｕｍ）胞质的保持系ＣＡ８０５７和恢复系保－７６９－２２－６的线粒体ＤＮＡ进行分析和比较,发现该不育系的线粒体ＤＮＡ组织结构明显不同于其保持系,也不同于其恢复系。Ｓｏｕｔｈｅｒｎ结果表明,该不育系线粒体基因组在ａｔｐＡ、ａｔｐ９、ｃｏｂ和ｃｏｘⅡ基因上或附近具有显著的组织结构差异。ＲＡＰＤ分析证实了这一点。相反,ＲＦＬＰ和ＲＡＰＤ结果都表明保持系与恢复系之间线粒体基因组结构非常相似。这支持了该不育系的胞质遗传特点来源于与普通小麦胞质差异较大的野生型胞质的事实。推测这种胞质差异与育性有关     

红莲型细胞质雄性不育水稻线粒体DNA的AP-PCR分析

为了研究红莲型细胞质雄性不育与线粒体基因组的关系。以水稻红莲型粤泰细胞质雄性不育系A和保持系B及杂种一代F1为材料。应用AP-PCR分析,用10个单引物对其线粒体DNA进行扩增。实验结果表明,不同的引物在3种材料间均有不同程度的差异。为红莲型细胞质雄性不育分子机理的研究提供了线索;此外,在引物6F1的扩增图谱中找到一条在YTA和F1中特异的带TAF6F2,Sounthern分析TAF6F2不育胞质的特异性,可能与红莲型水稻细胞质雄性 不育性状的形成有关。     

基于果蝇DNA甲基化的AFLP体系的建立及优化

以黑腹果蝇(Drosophila melanogaster)Canton-S品系为材料,采用改良SDS法提取高质量DNA,对连接、预扩增及选择性扩增进行分析,建立适用于果蝇基因组DNA甲基化多态性研究的AFLP优化体系:1)10μL连接体系加T4连接酶1 U,AluⅠ接头50 pmol,EcoR Ⅰ接头5 pmol,4℃反应12 h;2)25μL预扩增体系含Mg2+0.2 mmol/L,dNTPs 0.15 mmol/L,模板1.0μL,Taq DNA聚合酶2 U,E-00 50 ng,A-00 50 ng;3)25μL选择性扩增体系含Mg2+0.1 mmol/L,dNTPs 0.15 mmol/L,模板2.0μL,Taq DNA酶1.5 U、E+340 ng,A+3 40 ng.该体系稳定性高、重复性好,适用于果蝇基因组DNA甲基化多态性研究.     

玉米新选细胞质雄性不育系小孢子发育的细胞学观察及DNA甲基化分析

细胞质雄性不育在高等植物中普遍存在,是杂种优势利用的重要工具,为推动植物杂种优势的利用发挥了重要作用。文章以本课题组前期新选的玉米细胞质雄性不育系A1、A2及保持系18(红)为材料,利用石蜡切片技术对不育材料小孢子发育过程进行细胞学观察,采用高效液相色谱法(HPLC)对不同发育时期的叶片及不同发育时期的雄穗DNA进行甲基化分析,从细胞学和表观遗传学角度了解不育系A1、A2的败育机制。结果表明：不育材料A1、A2小孢子发生败育的主要时期为四分体时期至单核小孢子中期。在不育系A2中还存在另一种败育方式,即在花粉母细胞时期表现出败育特征。甲基化分析结果表明,保持系18(红)的叶片DNA甲基化水平从苗期到拔节期迅速上升,而不育系A1、A2叶片DNA甲基化水平基本保持不变;保持系雄穗DNA甲基化水平表现为从花粉母细胞时期到双核期逐渐升高,而不育材料A1、A2从花粉母细胞时期到双核期的雄穗DNA甲基化水平表现为先上升后下降的趋势,达到最高峰的时期均出现在小孢子发育的四分体时期。从小孢子发育的细胞学观察结果可以发现,小孢子败育的主要时期往往具有较高的甲基化水平,推测DNA甲基化水平变化可能与不育材料A1、A2的花粉败育有关。     

A modified AFLP with fluorescence-labelled primers and automated DNA sequencer detection for efficient fingerprinting analysis in plants

A modified AFLP (amplified fragment length polymorphism) technique is described. Fluorescence-labelled primers were used in the selective amplifications. The amplified fragments were detected on denaturing polyacrylamide gels using an automated ALF DNA sequencer with the fragment option. The modified AFLP technique avoids the use of isotopes or silver staining, but gives a much higher resolution than other AFLP detection systems.     

Identification ofporphyra lines (rhodophyta) by AFLP DNA fingerprinting and molecular markers

Twenty-sevenPorphyra lines from 5 classes, including lines widely used in China, wild lines, and lines introduced to China from abroad in recent years, were screened by means of amplified fragment length polymorphism (AFLP) with 24 primer pairs. From the generated AFLP products, 13 bands that showed stable and repeatable AFLP patterns amplified by primer pairs M-CGA/E-AA and M-CGA/E-TA were scored and used to develop the DNA fingerprints of the 27Porphyra lines. Moreover, the DNA fingerprinting patterns were converted into computer language expressed with digitals 1 and 0, which represented the presence (numbered as 1) or absence (numbered as 0) of the corresponding band. On the basis of these results, computerized AFLP DNA fingerprints were constructed in which each of the 27Porphyra lines has its unique AFLP fingerprinting pattern and can be easily distinguished from others. Software called PGI-AFLP (Porphyra germ-plasm identification-AFLP) was designed for identification of the 27Porphyra lines. In addition, 21 specific AFLP markers from 15Porphyra lines were identified; 6 AFLP markers from 4Porphyra lines were sequenced, and 2 of them were successfully converted into SCAR (sequence characterized amplification region) markers. The developed AFLP DNA fingerprinting and specific molecular markers provide useful ways for the identification, classification, and resource protection of thePorphyra lines.     

华北地区小丛红景天种群的AFLP遗传多样性

利用扩增片段长度多态性(AFLP)标记, 对分布于华北地区5个山脉的25个小丛红景天(Rhodiola dumulosa)自然种群的776个样品进行了遗传多样性和遗传结构的研究。结果表明: 华北地区小丛红景天种群具有较高的遗传多样性, 4对选择扩增引物共扩增出398条清晰的条带, 其中多态带312条, 种群的平均多态位点百分率为78.46%, 种群总的Nei’s基因多样性为0.364 9, 总Shannon多态性信息指数为0.542 2。华北地区小丛红景天种群间的遗传分化系数G_st = 0.150 7, 基因流Nm = 2.817 9, 表明种群间遗传分化较低, 有一定的基因交流。AMOVA分析结果也表明: 华北地区小丛红景天的遗传变异主要存在于种群内, 地理单元间有一定的遗传分化, 而种群间的遗传分化较低。STRUCTURE的分析和UPGMA聚类分析结果一致, 结果显示地理分布距离相近的种群优先聚在一起。Mantel检验也进一步证实, 华北地区小丛红景天种群的遗传距离与地理距离间呈显著的正相关关系(r = 0.512 9, p < 0.001)。种群的遗传多样性与海拔呈显著的负相关关系(p < 0.05), 而与坡向没有显著相关性。用Dfdist软件分析海拔对遗传多样性的影响, 结果表明没有显著的受选择位点。     

水稻两种细胞质雄性不育“三系”及其F1杂交种线粒体DNA的RFLP分析

对水稻BT型和WA型细胞质的雄性不育系,相应保持系和恢复系以及杂种的mtDNA用12个线粒体探针进行了RFLP分析,结果如下(1)BT型和WA型不育系的mtDNA在组织结构上存在差异;(2)不育系的mtDNA与其保持系间存在显著差异,推测mtDNA与水稻的cms有关;(3)atp9探针检测到WA型不育系与F1之间的多态性,Frag36探针检测到BT型不育系与F1之间的多态性,Frag9探针检测到WA型和BT型不育系与其F1之间的多态性,证明核恢复基因影响mtDNA的结构;(4)对mtDNA的结构变异与细胞质雄性不育的关系进行了分析与探讨.     

Cytoplasmic male sterility and fertility restoration in wheat are not associated with rearrangements of mitochondrial DNA in the gene regions for cob,coxII, or coxI

In comparing the genetic organization and exploring the molecular basis of cytoplasmic male sterility (CMS) in wheat, mitochondrial DNAs (mtDNA) from Triticum aestivum, T. timopheevi, CMS alloplasmic wheat with T. aestivum nucleus and T. timopheevi mitochondria, and fertility-restored lines were compared by hybridization analysis with specific probes for three gene regions: CoxII, cob, and coxI. Minor differences between T. aestivum- and T. timopheevi-derived sources were found for gene regions for coxII and cob. For coxI, there are significant differences between T. timopheevi-derived mtDNAs and T. aestivum mtDNA extending beyond an 8 kb distance. All T. timopheevi-derived mtDNA sources have a chimeric gene region (orf256) with part of the upstream coxI gene region, including some coxI-coding region, preceding coxI. The part of orf256 that does not include any of coxI and the 3-flanking region of CMS coxI are not found in T. aestivum mtDNA. Neither orf256 nor the CMS 3-flanking region of coxI are found in T. timopheevi or T. aestivum chloroplastic or nuclear DNA. There do not appear to be DNA sequence differences for the three gene regions studied that are related to either CMS or fertility-restored states.     

Cytoplasmic effects on DNA methylation between male sterile lines and the maintainer in wheat (Triticum aestivum L.)

Male sterile cytoplasm plays an important role in hybrid wheat, and three-line system including male sterile (A line), its maintainer (B line) and restoring (R line) has played a major role in wheat hybrid production. It is well known that DNA methylation plays an important role in gene expression regulation during biological development in wheat. However, no reports are available on DNA methylation affected by different male sterile cytoplasms in hybrid wheat. We employed a methylation-sensitive amplified polymorphism technique to characterize nuclear DNA methylation in three male sterile cytoplasms. A and B lines share the same nucleus, but have different cytoplasms which is male sterile for the A and fertile for the B. The results revealed a relationship of DNA methylation at these sites specifically with male sterile cytoplasms, as well as male sterility, since the only difference between the A lines and B line was the cytoplasm. The DNA methylation was markedly affected by male sterile cytoplasms. K-type cytoplasm affected the methylation to a much greater degree than T-type and S-type cytoplasms, as indicated by the ratio of methylated sites, ratio of fully methylated sites, and polymorphism between A lines and B line for these cytoplasms. The genetic distance between the cytoplasm and nucleus for the K-type is much greater than for the T- and S-types because the former is between Aegilops genus and Triticum genus and the latter is within Triticum genus between Triticum spelta and Triticum timopheevii species. Thus, this difference in genetic distance may be responsible for the variation in methylation that we observed.