Estimation of genetic parameters for partial egg production periods by means of random regression models

We estimated genetic parameters for egg production in different periods by means of random regression models, aiming at selection based on partial egg production from a generation of layers. The production was evaluated for each individual by recording the number of eggs produced from 20 to 70 weeks of age, with partial records taken every three weeks for a total of 17 periods. The covariance functions were estimated with a random regression model by the restricted maximum likelihood method. A model composed of third-order polynomials for the additive effect, ninth-order polynomials for the permanent environment, and a residual variance structure with five distinct classes, was found to be most suitable for adjusting the egg production data for laying hens. The heritability estimates varied from 0.04 to 0.14. The genetic correlations were all positive, varying from 0.10 to 0.99. Selection applied in partial egg production periods will result in greater genetic profit for the adjacent periods. However, as the distance in time between periods increases, selection becomes less efficient. Selection based on the second period (23 to 25 weeks of age), where greater heritability was estimated, would note benefit the final egg-laying cycle periods.     

Breeding value accuracy estimates for growth traits using random regression and multi-trait models in Nelore cattle

We quantified the potential increase in accuracy of expected breeding value for weights of Nelore cattle, from birth to mature age, using multi-trait and random regression models on Legendre polynomials and B-spline functions. A total of 87,712 weight records from 8144 females were used, recorded every three months from birth to mature age from the Nelore Brazil Program. For random regression analyses, all female weight records from birth to eight years of age (data set I) were considered. From this general data set, a subset was created (data set II), which included only nine weight records: at birth, weaning, 365 and 550 days of age, and 2, 3, 4, 5, and 6 years of age. Data set II was analyzed using random regression and multi-trait models. The model of analysis included the contemporary group as fixed effects and age of dam as a linear and quadratic covariable. In the random regression analyses, average growth trends were modeled using a cubic regression on orthogonal polynomials of age. Residual variances were modeled by a step function with five classes. Legendre polynomials of fourth and sixth order were utilized to model the direct genetic and animal permanent environmental effects, respectively, while third-order Legendre polynomials were considered for maternal genetic and maternal permanent environmental effects. Quadratic polynomials were applied to model all random effects in random regression models on B-spline functions. Direct genetic and animal permanent environmental effects were modeled using three segments or five coefficients, and genetic maternal and maternal permanent environmental effects were modeled with one segment or three coefficients in the random regression models on B-spline functions. For both data sets (I and II), animals ranked differently according to expected breeding value obtained by random regression or multi-trait models. With random regression models, the highest gains in accuracy were obtained at ages with a low number of weight records. The results indicate that random regression models provide more accurate expected breeding values than the traditionally finite multi-trait models. Thus, higher genetic responses are expected for beef cattle growth traits by replacing a multi-trait model with random regression models for genetic evaluation. B-spline functions could be applied as an alternative to Legendre polynomials to model covariance functions for weights from birth to mature age.     

Random amplified polymorphic DNA markers in crosses between inbred lines of Rhode Island Red and White Leghorn chickens

Reciprocal crosses and backcrosses were conducted between inbred Rhode Island Red and White Leghorn chickens differentiated for egg production and egg quality traits. Random amplified polymorphic DNA (RAPD) markers distinguishing inbred lines were detected. Twenty-two polymorphic bands were found from screening 120 single 10-mer random primers of which two were consistent with sex-linked markers. Of 90 pairwise two-point linkage analyses completed for the autosomal markers, four close linkages (8·2 cM to 14·9 cM) were significantly different from zero.     

Gregarious nesting in relation to floor eggs in broiler breeders

Gregarious nesting has often been observed in laying hens, where hens prefer to visit a nest already occupied by other hens over empty nests. This may result in overcrowding of the nests which is considered a welfare issue and, moreover, can increase the economic issue of floor eggs. This study aimed to describe gregarious nesting and spatial behavior in broiler breeders and how this relates to genetic background, fearfulness and mating behavior. Five commercially available genetic lines of broiler breeders were housed in 21 pens of 550 females and 50 males (six pens for lines 1 and 2, five pens for line 3 and two pens for lines 4 and 5) during the ages 20–60 weeks. Every 10 weeks, the plumage condition and wounds were assessed of 50 random hens per pen. Avoidance distance and novel object tests were performed to assess fearfulness at four time points. Distribution of eggs over nests was observed for 6 weeks at the onset of egg production at 26 weeks of age, and use of space was recorded at four time points, while (floor) egg production was noted daily per pen. We found differences between genetic lines over time in plumage condition and prevalence of wounds. Fear of humans was highest at the earliest age tested and did not correlate with general fearfulness as assessed by the novel object test. The distribution of eggs over nests was related to genetic background and was more uneven at the earliest age compared to later ages, and a more uneven distribution was correlated with an increased percentage of floor eggs. Distribution of birds over the litter area differed between the genetic lines, and less use of the litter area was correlated with an increased fear of humans and presence of wounds, suggesting an association with aggressive mating behavior. This difference in distribution of the birds could also explain the correlation between increased presence of wounds and decreased percentage of floor eggs. It is concluded that broiler breeders do show gregarious nesting, which is affected by genetic background. Both increased gregarious nesting and wounds are related to increased floor egg percentage, which should be studied further in broiler breeder research. Genetic selection for even use of the available nests and of the litter and slatted area would therefore support both broiler breeder welfare and performance.     

Novel AluI-polymorphism in the fourth intron of chicken growth hormone gene

A novel AluI-polymorphism in the fourth intron of chicken growth hormone gene was shown. The cytosine to thymine transition in the restriction site for AluI was detected. Primers flanking the 460 bp fragment of the fourth intron containing a polymorphic restriction site for AluI were designed. The nucleotide sequence fragments amplified polymorphic variants were determined. Using designed primers, the genetic structure of populations of White Plymouth Rock, Poltava Clay, Rhode Island Red, and Borkovskaya Barvistaya chicken breeds were analyzed. It was found that growth hormone gene (by AluI-polymorphism in the fourth intron) was polymorphic in all experimental populations. Frequencies of alleles C and T in chicken population of White Plymouth Rock breed were 0.14 and 0.86, Rhode Island Red were 0.3 and 0.7, Poltava Clay were 0.04 and 0.96, and Borkovskaya Barvistaya were 0.08 and 0.92, respectively. The tendency to increase egg production and egg weight of chicken with C/C genotype and meat quality (live weight, carcass weight, weight of pectoral muscles) of chickens with genotype T/T of Rhode Island Red chicken breed was shown.     

Polynomials to model the growth of young bulls in performance tests

The use of polynomial functions to describe the average growth trajectory and covariance functions of Nellore and MA (21/32 Charolais+11/32 Nellore) young bulls in performance tests was studied. The average growth trajectories and additive genetic and permanent environmental covariance functions were fit with Legendre (linear through quintic) and quadratic B-spline (with two to four intervals) polynomials. In general, the Legendre and quadratic B-spline models that included more covariance parameters provided a better fit with the data. When comparing models with the same number of parameters, the quadratic B-spline provided a better fit than the Legendre polynomials. The quadratic B-spline with four intervals provided the best fit for the Nellore and MA groups. The fitting of random regression models with different types of polynomials (Legendre polynomials or B-spline) affected neither the genetic parameters estimates nor the ranking of the Nellore young bulls. However, fitting different type of polynomials affected the genetic parameters estimates and the ranking of the MA young bulls. Parsimonious Legendre or quadratic B-spline models could be used for genetic evaluation of body weight of Nellore young bulls in performance tests, whereas these parsimonious models were less efficient for animals of the MA genetic group owing to limited data at the extreme ages.     

Genetic evaluation and selection response for growth in meat-type quail through random regression models using B-spline functions and Legendre polynomials

The objective was to estimate (co)variance functions using random regression models (RRM) with Legendre polynomials, B-spline function and multi-trait models aimed at evaluating genetic parameters of growth traits in meat-type quail. A database containing the complete pedigree information of 7000 meat-type quail was utilized. The models included the fixed effects of contemporary group and generation. Direct additive genetic and permanent environmental effects, considered as random, were modeled using B-spline functions considering quadratic and cubic polynomials for each individual segment, and Legendre polynomials for age. Residual variances were grouped in four age classes. Direct additive genetic and permanent environmental effects were modeled using 2 to 4 segments and were modeled by Legendre polynomial with orders of fit ranging from 2 to 4. The model with quadratic B-spline adjustment, using four segments for direct additive genetic and permanent environmental effects, was the most appropriate and parsimonious to describe the covariance structure of the data. The RRM using Legendre polynomials presented an underestimation of the residual variance. Lesser heritability estimates were observed for multi-trait models in comparison with RRM for the evaluated ages. In general, the genetic correlations between measures of BW from hatching to 35 days of age decreased as the range between the evaluated ages increased. Genetic trend for BW was positive and significant along the selection generations. The genetic response to selection for BW in the evaluated ages presented greater values for RRM compared with multi-trait models. In summary, RRM using B-spline functions with four residual variance classes and segments were the best fit for genetic evaluation of growth traits in meat-type quail. In conclusion, RRM should be considered in genetic evaluation of breeding programs.     

Membrane mobility agents : V. Genetic variability in the fusibility of hen red cells

The membrane mobility agent, A₂C, promotes fusion of hen red cells from several strains of Leghorn hens with high efficiency. Cells from Cornish hens are also easily fused by the same procedure, but cells from Rhode Island Red hens fuse more slowly and to a lesser extent under the same conditions. Cells from several strains of White Rock hens do not fuse when treated in the same way. A potentially useful new parameter of the genetic control of the behavior of membrane (and/or cytoskeletal structure) is thus indicated.     

Effect of rearing density on pecking behaviour and plumage condition of laying hens in two types of aviary

The objective of this experiment was to investigate the effect of rearing density on pecking behaviour and plumage during rearing and throughout the laying period in aviaries. Chicks were reared on sand at high (H; 13 m⁻²) or low (L; 6.5 m⁻²) density, in four rearing pens of 390 chicks and eight pens of 195 chicks, respectively, each pen measuring 30 m². Proportions of chicks per pen performing various types of pecking behaviour were recorded by scan sampling during 16 observation bouts in each rearing pen at 6 weeks of age and during 24 observation bouts at 12 weeks. Individual body weights and plumage condition were recorded. Later, these pullets were housed at 17 hens m⁻² in Tiered Wire Floor (TWF; 3 H and 3 L pens of 275 hens) and Laco-Volétage (2 H and 2 L pens of 275 hens) aviaries. At 35 weeks, two samples of eight hens from each aviary pen were observed for pecking behaviour in a test pen. Throughout the laying period, additional records were collected on pecking behaviour, body weight, plumage condition, egg production, and mortality. The L birds had better plumage condition at 6 weeks of age and throughout the laying period. These birds also ground pecked more frequently than H birds during rearing and the laying period. At 12 weeks, L birds feather pecked less than H birds, but no relationship was found between rearing density and feather-pecking behaviour during the laying period. Although TWF hens feather pecked more frequently than Volétage hens, there was no interaction between rearing density and type of aviary for the various pecking behaviours.     

Random regression analyses using B-spline functions to model growth of Nellore cattle

The objective of this study was to estimate (co)variance components using random regression on B-spline functions to weight records obtained from birth to adulthood. A total of 82 064 weight records of 8145 females obtained from the data bank of the Nellore Breeding Program (PMGRN/Nellore Brazil) which started in 1987, were used. The models included direct additive and maternal genetic effects and animal and maternal permanent environmental effects as random. Contemporary group and dam age at calving (linear and quadratic effect) were included as fixed effects, and orthogonal Legendre polynomials of age (cubic regression) were considered as random covariate. The random effects were modeled using B-spline functions considering linear, quadratic and cubic polynomials for each individual segment. Residual variances were grouped in five age classes. Direct additive genetic and animal permanent environmental effects were modeled using up to seven knots (six segments). A single segment with two knots at the end points of the curve was used for the estimation of maternal genetic and maternal permanent environmental effects. A total of 15 models were studied, with the number of parameters ranging from 17 to 81. The models that used B-splines were compared with multi-trait analyses with nine weight traits and to a random regression model that used orthogonal Legendre polynomials. A model fitting quadratic B-splines, with four knots or three segments for direct additive genetic effect and animal permanent environmental effect and two knots for maternal additive genetic effect and maternal permanent environmental effect, was the most appropriate and parsimonious model to describe the covariance structure of the data. Selection for higher weight, such as at young ages, should be performed taking into account an increase in mature cow weight. Particularly, this is important in most of Nellore beef cattle production systems, where the cow herd is maintained on range conditions. There is limited modification of the growth curve of Nellore cattle with respect to the aim of selecting them for rapid growth at young ages while maintaining constant adult weight.     

Induction of embryonic dormancy in the calanoid copepod Acartia hudsonica: heritability and phenotypic plasticity in two geographically separated populations

The planktonic copepod Acartia hudsonica apparently requires summer diapause or dormancy to persist in Narragansett Bay, RI. In estuaries to the north, however, active A. hudsonica populations are present year-round and may not express dormancy. Using a full-sibling rearing design and analysis of variance (ANOVA), I assessed the importance of phenotypic and genetic sources of variation in two geographically separate populations, one from Maine and one from Rhode Island. Both populations showed phenotypic plasticity in the percentage of dormant eggs produced. Moreover, experiments revealed significant sibship-environment interactions in both populations, indicating that the phenotypic plasticity has a genetic component. Both populations also revealed a significant amount of genetic variation in the percentage of dormant eggs produced. For the Maine population, broad sense heritability was high (0.91, 1.10) in two short-day (12L:12D) treatments and near zero (0.08) in the long-day treatment (15L:9D). For a Rhode Island population, broad sense heritability was higher (0.95) in a low-temperature short-day treatment (13.5 °C, 12L:12D) than in a high-temperature short-day treatment (17.5 °C, 12L:12D; h²=0.25).     

DNA markers and crossbreeding scheme as means to select sires for heterosis in egg production of chickens

Genotypes for 24 microsatellite markers, dispersed across the chicken genome, were used to predict progeny performance and heterosis for egg production (number and mass) in 'layers' (egg-type chickens). These markers were used to evaluate genetic distance between each of 39 sires sampled from two-layer male-lines; Rhode Island Red (RIR) and White egg Leghorn (Leghorn), and a DNA pool of 30 randomly sampled females from a Brown-egg female line (Silver). Each sire was analysed for egg production across months in the laying period and cumulatively in each of three subperiods; onset (2 month), mid (9 month) and late (1 month). The average Reynolds' genetic distance between Leghorn sires and the Silver female line (theta;=0.6) was significantly higher than that between RIR sires and the Silver female line (theta;=0.5). Neither performance nor heterosis values in the RIR sire's daughters were associated with genetic distance values between sires and the Silver female line. On the other hand, performance as well as heterosis values of Leghorn's daughters were positively associated with genetic distance. This association was particularly evident in the mid-subperiod. If 25% of the most genetically distant Leghorn sires from the Silver female line had been selected in a single generation on the basis of DNA markers information only, average egg production of the crossbred daughters would have been improved by about nine eggs (3%). In principle, further improvement is possible if selection to increase genetic distance between the parental lines is carried on.     

Evaluation of brewer's dried grains in the diets of laying hens

Diets containing 0, 15, 30, 45 and 60% brewer's dried grains (BDG) were supplied ad libitum to twenty Rhode Island Red laying hens in the seventh month of lay. The experiment lasted 75 days, after which pure brewer's dried grains (90% BDG) were offered to the same hens for two weeks. Diets with up to 45% BDG were isoproteic, but diets with a higher content had a higher level of protein.On a dry-matter basis, the BDG contained 2.27 kcal ME/g and nitrogen digestibility was 75.4%. Diets containing 45% or more BDG showed a significant decrease (p<0.05) in metabolizable-energy content. No significant differences were observed in either nitrogen digestibility or nitrogen balance. Brewer's dried grains must be considered as a protein supplement.Some productive characteristics (food intake, egg production, feed efficiency, egg weight, egg quality and body-weight gain) were also studied. Diets containing 15 and 30% BDG appeared to be adequate for laying hens; 45% BDG was also acceptable, although the losses of body weight and shell quality suggested that this level should not be used without further research. At 60%, BDG caused a significant decrease in most of the characteristics studied. The use of 90% BDG caused a reduction in food intake, enormous body weight losses and, in the second week of the experimental period, an inhibition of the lay.     

The individual nest box as a super-stimulus for domestic hens

Following reports of inconsistent nest choice by hens in groups, choice of nest boxes by solitary hens was investigated. Thirty-two hens of a White Leghorn strain were each isolated with six nest boxes while they laid six eggs. From 16 hens, eggs were collected daily. Only one of these birds laid all her eggs in one nest box, and others used up to four boxes. The other 16 were allowed to accumulate eggs, and these were significantly more consistent in nest choice. Five used only one box. However, the other 11 of this group showed incomplete consistency.An explanation for inconsistent nest choice was suggested by a second experiment. The importance of enclosure in nest-site selection was tested in hens of White Leghorn and Rhode Island Red strains. Individuals about to lay their first egg were isolated with a choice of two types of nest box, selected from five types of different enclosure. Exposed nests, of similar dimensions to natural nests, were rarely used by either strain. By contrast, more enclosed nests were strongly selected. These results indicate that enclosure is an important stimulus in nest-site selection, and that artificial nest boxes, which are more enclosed than natural sites, act as super-normal stimuli (or “super-stimuli”). Choices between super-stimuli are likely to be equivocal, which accounts for inconsistency in the use of nest boxes and other features of the nesting behaviour of domestic hens.     

Population trends and habitat use of Harlequin Ducks in Rhode Island

ABSTRACT.   To assess population trends of Harlequin Ducks ( Histrionicus histrionicus ) in Rhode Island (U.S.A.), we analyzed Christmas Bird Counts and other historical surveys and also conducted surveys during the winter of 2005–2006. We estimated sex and age ratios, evaluated the effects of tidal regime and time of day on survey precision, and quantified habitat use. The population in Rhode Island experienced logistic growth from 1976 to 2004, with approximately 150 birds now wintering at three primary sites in the state. We estimated that the current ratio of males to females in the region was 1.6:1 (62% males) and that 13% of males were first-winter birds. Most Harlequin Ducks were observed in rocky habitats within 50 m of the shore or offshore islands. We detected the greatest numbers of birds, with the least amount of variation, during morning surveys at low tide, suggesting that this may be the most appropriate time for population monitoring. Increases in the Rhode Island population and male-biased sex ratios may indicate a local population recovery resulting from a hunting ban initiated in 1990. Although most Harlequin Ducks in eastern North America winter in Maine, the population in Rhode Island represents one of the largest in the southern part of their range.     

Random regression models using different functions to model test-day milk yield of Brazilian Holstein cows

We analyzed 152,145 test-day records from 7317 first lactations of Holstein cows recorded from 1995 to 2003. Our objective was to model variations in test-day milk yield during the first lactation of Holstein cows by random regression model (RRM), using various functions in order to obtain adequate and parsimonious models for the estimation of genetic parameters. Test-day milk yields were grouped into weekly classes of days in milk, ranging from 1 to 44 weeks. The contemporary groups were defined as herd-test-day. The analyses were performed using a single-trait RRM, including the direct additive, permanent environmental and residual random effects. In addition, contemporary group and linear and quadratic effects of the age of cow at calving were included as fixed effects. The mean trend of milk yield was modeled with a fourth-order orthogonal Legendre polynomial. The additive genetic and permanent environmental covariance functions were estimated by random regression on two parametric functions, Ali and Schaeffer and Wilmink, and on B-spline functions of days in milk. The covariance components and the genetic parameters were estimated by the restricted maximum likelihood method. Results from RRM parametric and B-spline functions were compared to RRM on Legendre polynomials and with a multi-trait analysis, using the same data set. Heritability estimates presented similar trends during mid-lactation (13 to 31 weeks) and between week 37 and the end of lactation, for all RRM. Heritabilities obtained by multi-trait analysis were of a lower magnitude than those estimated by RRM. The RRMs with a higher number of parameters were more useful to describe the genetic variation of test-day milk yield throughout the lactation. RRM using B-spline and Legendre polynomials as base functions appears to be the most adequate to describe the covariance structure of the data.     

Performance,Egg Quality Traits,and Serum Metabolite Concentrations of Laying Hens Affected by Dietary Supplemental Chromium Picolinate and Vitamin C Under a Heat-Stress Condition

A 3?×?2 factorial experiment consisting three levels (0, 200, and 400 μg/kg) of chromium (chromium picolinate) and two levels (0 and 250 mg/kg) of vitamin C was employed to evaluate the effects of these dietary supplements on performance, egg quality traits, and serum biochemical parameters of heat-stressed laying hens (Lohmann LSL-Lite) from 66 to 74 weeks of age. Feed intake increased when birds were given either 400 μg/kg chromium or 250 mg/kg vitamin C (P?<?0.05), but the birds that received both chromium and vitamin C consumed feed similar to those that received only chromium. Dietary treatments had no effect on egg production, egg mass, egg volume, feed conversion ratio, and body mass (P?>?0.05). The birds that fed on diet with chromium or vitamin C produced eggs with higher shell mass and thickness compared to the control. Both eggshell mass and thickness decreased when vitamin C and chromium were supplemented simultaneously, and birds given the diet supplemented with 400 μg/kg chromium and 250 mg/kg vitamin C had eggshell mass and thickness similar to those of the control group. The serum concentration of chromium increased due to increasing level of dietary chromium (P?<?0.05). The birds that received diet with chromium and vitamin C had higher serum concentrations of chromium compared to those that received only chromium (P?<?0.05). Similarly, the hens that received chromium and vitamin C had higher serum concentrations of calcium and phosphorus compared to the hens fed with other treatments (P?<?0.05). The birds given with supplemental chromium exhibited lower serum glucose, total cholesterol, and triglycerides concentrations but higher serum albumin and total protein concentrations compared to the other groups (P?<?0.05).     

Frequency of luteinizing hormone surges and egg production rate in turkey hens

Whether the interval between preovulatory surges of LH was different between lines of turkey hens with either poor (RBC3 line, peak at 55%) or excellent rate of egg production (Egg line, peak at 85%) was examined. Laying hens were cannulated and bled hourly for 10 days at peak of production. A constant light photoschedule was used to avoid diurnal masking of innate circadian rhythms. The mean interval between LH surges in the RBC3 line was longer than in the Egg line and had a higher coefficient of variation. A few longer LH surge intervals (72 h) were found in some RBC3 line hens (2 of 7 hens), but none were found in Egg line hens (0 of 11 hens). All progesterone (P4) surges were coupled with LH surges, but not all LH-P4 surges were coupled with ovipositions (blind LH-P(4) surges). The percentage of blind LH-P4 surges was not different between lines. The baseline concentration of LH was higher in Egg line than RBC3 line hens, but LH surge amplitude, and surge duration were not different. The baseline and surge amplitude concentrations of P4 were not different between lines, nor was the concentration of estradiol-17beta. The longer interval between LH surges was the major factor tested that was associated with the poorer egg production rate in RBC3 line hens in comparison to Egg line hens. A higher incidence of blind LH surges further contributed to lower egg production in RBC3 line turkey hens.     

Effect of Ligustrum lucidum and Schisandra chinensis on the egg production, antioxidant status and immunity of laying hens during heat stress

The experiment was conducted to evaluate the effect of two plants belonging to Chinese herbal medicines, Ligustrum lucidum (LL) and Schisandra chinensis (SC), on the laying performance, antioxidant status and immunity of hens during heat stress. The results showed that diets supplement with 1% of either LL or SC had beneficial effects on egg production and FCR of hens during heat stress (p < 0.05), compared with the control group. Either LL or SC significantly reduced malondialdehyde (MDA) concentration of heart, liver, sera and egg yolk. In addition, glutathione reductase (GR) activity of tissues and sera of the birds was significantly elevated by supplementation LL or SC. Furthermore, LL or SC supplementation significantly elevated lymphoblastogenese of the birds and the antibody values against Newcastle disease virus (NDV). The results suggest that diets supplement with 1% of either LL or SC may enhance egg production, immune function, and antioxidant status of hens during heat stress.