木蹄层孔菌不同居群间生长特性、木质素降解酶与SRAP标记遗传多样性

以帽儿山、长白山、凉水、本溪木蹄层孔菌(Fomes fomentarius) 4个居群为研究对象,采用菌丝长度测量法比较4个地点木蹄层孔菌菌株在PDA固体培养基上的生长速度,采用菌丝体干重法比较4个地点木蹄层孔菌菌株在PDA液体培养基中生物量的变化,结果显示木蹄层孔菌在23 ℃下生长速度显著高于28 ℃,说明木蹄层孔菌的生长对温度较敏感,23 ℃更适合木蹄层孔菌的生长。在同一温度下培养,4个地点的木蹄层孔菌生长速度无显著差异。通过比色法检测4个地点的木蹄层孔菌木质素降解相关酶(木质素过氧化物酶,锰过氧化物酶,漆酶)活性差异,结果显示同一种酶酶活性在4个地点间没有显著差异;在不同培养基上培养时,3种酶在PDA培养基上的活性均显著高于完全培养基。同时,采用序列相关扩增多态性(Sequence-related amplified polymorphism, SRAP)技术初探了木蹄层孔菌4个居群的遗传多样性和遗传分化, 结果表明木蹄层孔菌4个居群中多态位点比率最高的是本溪,其次是帽儿山和凉水,而长白山最低;AMOVA分析结果显示,居群间的遗传分化为24.74%,居群内的遗传分化为75.26%,木蹄层孔菌的遗传分化主要发生在居群内部。根据Nei's遗传距离对木蹄层孔菌4个居群进行UPGMA聚类分析,结果显示帽儿山和本溪居群最先聚类,其次聚类的是长白山居群,最后是凉水居群。     

木质素酶及其生产菌的筛选育种

木质素酶降解木质纤维素材料中的木质素,使木质素-半纤维素-纤维素结构解体,纤维素得以暴露出来供后续步骤处理.它广泛应用于生物制浆、生物漂白、废水处理等工业过程中.由于近年利用可再生木质纤维素材料用酶法水解生产酒精成了研究热点,因而作为纤维素材料生物转化工艺预处理过程中的关键角色,木质素酶也极大地唤起人们的研究兴趣.本文介绍了木质素与白腐真菌(Phanerochaete chrysosporium)木质素降解酶系的特征以及锰过氧化物酶、木质素过氧化物酶、漆酶等3种木质素酶的催化作用机理,归纳了目前流行的木质素酶产生菌的筛选方法及近年来从自然界筛选木质素酶高产菌的种类,并对产木质素酶野生菌株的诱变育种与基因工程改造的进展进行了阐述.     

不同固体发酵培养基下三种白腐真菌分泌的木质纤维素酶活性

本研究选取众所周知的典型白腐真菌树舌灵芝Ganoderma applanatum、毛栓孔菌Trametes hirsuta和木蹄层孔菌Fomes fomentarius作为研究对象,对其利用木质纤维生物质进行发酵及添加有机营养、无机盐、金属离子、表面活性剂等进行了探索,期间以测定漆酶、滤纸纤维素酶、木聚糖酶活性表征3种...     

7种木层孔菌属真菌的培养特性*

描述了7种木层孔菌属 (Phellinus) 真菌的培养特性。它们是淡黄木层孔菌（P. gilvus）,火木层孔菌（P. igniarius）,裂蹄木层孔菌（P. linteus）,松木层孔菌（P. pini）,冷杉木层孔菌(P. pini var.abietis),苹果木层孔菌 (P. pomaceus) 和稀硬木层孔菌（P.robustus）。     

7种木层孔菌属真菌的培养特性

描述了7种木层孔蓖属（Phellinus)真菌的培养特性,它们是淡黄木层孔菌（P.gilvus),火木层孔菌（P.igniarius),裂蹄木层孔菌（P.linteus),松木层孔菌（P.pini),冷杉木层孔菌（P.pinivar.abietis) ,苹果木层孔菌（P.pomaceus)和稀硬木层孔菌（P.robustus)。     

侧耳菌与粗毛栓菌在麦草培养基中产生木质纤维素降解酶的研究

草本植物,包括农作物秸杆的木质素主要是由松柏醇、芥子醇和对香豆醇的脱氢聚合物和对香豆酸组成[1,2],是结构复杂、稳定、多样的生物大分子物质.虽难于被一般微生物降解,但自然界中仍存在一些可降解木质素的微生物种类,白腐真菌是最重要的一类,它们通过分泌漆酶(Laccases,Lac)、木质素过氧化物酶(Lignin peroxidases,LiP)、锰过氧化物酶(Manganese-dependent peroxidases,MnP)、纤维素酶(Cellulas-es,Cel)和半纤维素酶(Hemicellulases,Hcel)等降解植物生物质.由于白腐菌在造纸工业中的生物制浆和纸浆生物漂白、环境保护等方面[4]有着很好的应用前景,因此倍受关注. 本研究选用在液体培养基中产酶能力强且产酶较快的白腐真菌侧耳sp2和粗毛栓菌[5]进行固体培养,研究它们产生木质纤维素降解酶类和降解植物生物质的能力.研究结果报道如下.     

一株木质纤维素降解菌的筛选及其全基因组分析北大核心CSCD

【目的】筛选和鉴定有木质纤维素降解能力的1株细菌,测定其相关酶活力并进行全基因组分析,为构建木质纤维素降解工程菌提供依据。【方法】采用3种木质素类似物(天青-B;酚红;愈创木酚)的脱色/染色法,从腐木和被枝叶覆盖的土壤中分离和筛选出1株具有较强木质纤维素降解能力的细菌。通过16S r RNA基因和全基因组序列分析对该菌进行种属鉴定。使用紫外分光光度法测定其锰过氧化物酶(Mn P)、漆酶(Lac)、羧甲基纤维素酶(CMCase)以及滤纸酶(FPA)活力,了解该菌相关酶活力大小在一定时间内的变化趋势。使用Illumina Miseq和454 GS Junior测序平台获取该菌的全基因组序列,将其全基因组序列经过注释的基因蛋白质序列提交COG和KEGG数据库进行BLASTp比对分析,确定该菌潜在的重要酶类和代谢途径,并对部分注释基因进行定量RT-PCR验证。【结果】筛选得到1株优势菌株S12,该菌经鉴定后命名为解鸟氨酸拉乌尔菌(Raoultella ornithinolytica)。在液体CMC-Na培养基中发酵28 h,菌体生长达到稳定期,纤维素降解相关酶活力也在此时达到峰值。生物信息学分析结果表明,菌株S12具有木质素降解通路中重要酶类的编码基因,如过氧化物酶、Fe-Mn型超氧化物歧化酶、邻苯二酚1,2-双加氧酶和原儿茶酸-3,4-双加氧酶等,这些基因在以碱性木质素为碳源的培养条件下表达量不同程度地高于以葡萄糖为碳源的培养条件。另外,菌株S12具备完整的纤维素降解和乙醇生成通路。【结论】本研究首次揭示了Raoultella ornithinolytica S12具备有效的木质纤维素降解性能,这对于推动木质纤维素应用产业的发展具有重要意义。     

重组白腐菌可更有效地破坏木质素

由Michael Gold及其同事在俄勒冈研究中心(Oregon Graduate Center)开发了一个转化白腐菌(Phanerochaete chrysosprium)的系统。这使把另外或修饰的编码锰过氧化物酶和木质素过氧化物酶的基因再插回到真菌中去成为可能。这两种酶对白腐菌降解木质素的能力起很大作用。向真菌导入这些酶基因可能使真菌通过增加自身产生这些酶的数量加强其降解木质素的能力。同样也使通过修饰基因以使真菌产生改善的酶成为可能。木质素是一种坚韧的三维多聚物,是一种在木材和其它植物组织中由纤维素和其它碳水化合物多聚物组成的混合物。Repligen(Cambridge,麻省)及一些政府机构的研究者长期     

血红密孔菌高产漆酶菌株的筛选及其对烟梗的生物降解

白腐菌是目前已知的唯一能将木质素彻底降解的微生物,而漆酶在木质素分解过程中起着重要的作用,被广泛应用于农作物秸秆或甘蔗渣等多种类型生物质的生物预处理和生物降解。本研究利用白腐菌产漆酶发酵培养基对30株血红密孔菌Pycnoporus sanguineus菌株进行筛选,得到了多株漆酶高产菌株,并研究了血红密孔菌发酵粗酶液和菌丝对烟梗的生物降解条件。研究结果表明:血红密孔菌及其产生的漆酶表现出了对烟梗木质素较强的生物降解能力。在漆酶浓度为40U/mL、温度30℃、pH4.5的条件下处理24h,烟梗中木质素的降解率可达到50.4%,纤维素和半纤维素的降解率分别为17.5%和17.3%;漆酶浓度为5U/mL、温度30℃、pH4.5的条件下处理48h,木质素降解率可达到65.1%。血红密孔菌菌丝也表现出对烟梗较好的生物降解效果,接种培养7d后烟梗中木质素降解率可达30%以上,21d后木质素的降解率可达79.1%,而纤维素和半纤维素的降解率仅为20%和12%左右。本研究不但为生物质材料的生物预处理和生物降解提供了优质的白腐菌及漆酶资源,还为通过烟梗的生物预处理提高烟草梗丝和卷烟品质提供了重要参数,具有一定的应用前景。     

几株非模式白腐菌降解能力的研究

利用愈创木酚选择培养基,从11种白腐菌株中定性筛选出3株白腐菌,分别是毡毛栓孔菌Trametes velutina Dai10149、鍺栓孔菌T.ochracea Cui 6888、绒毛栓孔菌T.pubescens Cui 7571。重量法绘制它们的生长曲线,同时测定其蛋白质含量及胞外酶活。通过比较发现,绒毛栓孔菌T.pubescens Cui 7571的生长速度快,且具有较强及稳定的酶活分泌能力;对针叶植物、阔叶植物及单子叶草本的木质纤维素均表现出较好的降解效果。     

Distribution of ligninolytic enzymes in selected white-rot fungi

Ten white-rot fungi have been screened for the production of ligninase, manganese peroxidase and laccase. Although the fungi degraded lignin efficiently, they significantly differed in the occurrence of individual ligninolytic enzymes. Based on the enzyme pattern produced under N-limited conditions, the fungi can be divided into the following four groups:1. ligninase-manganese peroxidase-laccase group,2. ligninase-manganese peroxidase group,3. manganese peroxidase-laccase group,4. laccase group.     

Lignin-modifying enzymes from selected white-rot fungi: production and role from in lignin degradation

Abstract: White-rot fungi produce extracellular lignin-modifying enzymes, the best characterized of which are laccase (EC 1.10.3.2), lignin peroxidases (EC 1.11.1.7) and manganese peroxidases (EC 1.11.1.7). Lignin biodegradation studies have been carried out mostly using the white-rot fungus Phanerochaete chrysosporium which produces multiple isoenzymes of lignin peroxidase and manganese peroxidase but does not produce laccase. Many other white-rot fungi produce laccase in addition to lignin and manganese peroxidases and in varying combinations. Based on the enzyme production patterns of an array of white-rot fungi, three categories of fungi are suggested: (i) lignin-manganese peroxidase group (e.g. P. chrysosporium and Phlebia radiata ), (ii) manganese peroxidase-laccase group (e.g. Dichomitus squalens and Rigidoporus lignosus ), and (iii) lignin peroxidase-laccase group (e.g. Phlebia ochraceofulva and Junghuhnia separabilima ). The most efficient lignin degraders, estimated by ¹⁴CO₂ evolution from ¹⁴C-[Ring]-labelled synthetic lignin (DHP), belong to the first group, whereas many of the most selective lignin-degrading fungi belong to the second, although only moderate to good [¹⁴C]DHP mineralization is obtained using fungi from this group. The lignin peroxidase-laccase fungi only poorly degrade [¹⁴C]DHP.     

Biodegradation of pentachlorophenol by white rot fungi under ligninolytic and nonligninolytic conditions

The roles of lignin peroxidase, manganese peroxidase, and laccase were investigated in the biodegradation of pentachlorophenol (PCP) by several white rot fungi. The disappearance of pentachlorophenol from cultures of wild type strains,P. chrysosporium, Trametes sp. andPleurotus sp., was observed. The activities of manganese peroxidase and laccase were detected inTiametes sp. andPleurotus sp. cultures. However, the activities of ligninolytic enzymes were not detected inP. chrysosporium cultures. Therefore, our results showed that PCP was degraded under ligninolytic as well as nonligninolytic conditions. Indicating that lignin peroxidase, manganese peroxidase, and laccase are not essential in the biodegradation of PCP by white rot fungi.     

Production of ligninolytic enzymes and synthetic lignin mineralization by the bird's nest fungus Cyathus stercoreus

Production of ligninolytic enzymes and degradation of ¹⁴C-ring labeled synthetic lignin by the white-rot fungus Cyathus stercoreus ATCC 36910 were determined under a variety of conditions. The highest mineralization rate for ¹⁴C dehydrogenative polymerizates (DHP; 38% ¹⁴CO₂ after 30 days) occurred with 1 mM ammonium tartrate as nitrogen source and 1% glucose as additional carbon source, but levels of extracellular laccase and manganese peroxidase (MnP) were low. In contrast, 10 mM ammonium tartrate with 1% glucose gave low mineralization rates (10% ¹⁴CO₂ after 30 days) but higher levels of laccase and manganese peroxidase. Lignin peroxidase was not produced by C. stercoreus under any of the studied conditions. Mn(II) at 11 ppm gave a higher rate of ¹⁴C DHP mineralization than 0.3 or 40 ppm, but the highest manganese peroxidase level was obtained with Mn(II) at 40 ppm. Cultivation in aerated static flasks gave rise to higher levels of both laccase and manganese peroxidase compared to the levels in shake cultures. 3,4-Dimethoxycinnamic acid at 500 μM concentration was the most effective inducer of laccase of those tested. The purified laccase was a monomeric glycoprotein having an apparent molecular mass of 70 kDa, as determined by calibrated gel filtration chromatography. The pH optimum and isoelectric point of the purified laccase were 4.8 and 3.5, respectively. The N-terminal amino acid sequence of C. stercoreus laccase showed close homology to the N-terminal sequences determined from other basidiomycete laccases. Information on C. stercoreus, whose habitat and physiological requirements for lignin degradation differ from many other white-rot fungi, expands the possibilities for industrial application of biological systems for lignin degradation and removal in biopulping and biobleaching processes. Received: 29 January 1999 / Received revision: 5 July 1999 / Accepted: 9 July 1999     

Ligninolytic properties of different white-rot fungi

Summary Seven white-rot fungi were examined for the production of ligninase, manganese peroxidase and laccase. All these enzymes were found inTrametes gibbosa andTrametes hirsuta. Only manganese peroxidase and laccase were produced byPycnoporus cinnabarinus,Coriolopsis polyzona,Stereum hirsutum,Dichomitus squalens andGanoderma valesiacum. All fungi decolorized Poly B-411 and Indulin AT plates with low-N medium. The differences in enzyme pattern indicate that different species of fungi may employ different modes of lignin metabolism.     

Production of Ligninolytic Enzymes by Phlebia Floridensis

Summary The present work reports the production of laccase, lignin peroxidase and manganese peroxidase by the little studied white-rot fungus Phlebia floridensis under a variety of nutritional and physicochemical conditions. Among the different media and supplements the highest yields of laccase, lignin peroxidase and manganese peroxidase were recorded in the presence of sugarcane bagasse, wheat straw and rice straw, respectively. Laccase and manganese peroxidase activities were best expressed at a pH of 4.5 while lignin peroxidase was optimally active at a lower pH. Laccase proved to be much more thermostable as compared to the other two enzymes.     

Differential expression of manganese peroxidase and laccase in white-rot fungi in the presence of manganese or aromatic compounds

White-rot fungi (basidiomycetes) play an important role in the degradation of lignin which is, beside cellulose, the major compound of wood. This process is catalyzed by ligninolytic enzymes, which are able to cleave oxidatively aromatic rings in lignin structure. Manganese peroxidase and laccase of white-rot-fungi are the most important of these among the ligninolytic enzymes. In addition, they are able to degrade xenobiotic aromatic polymers, persisting as environmental pollutants. Manganese and aromatic compounds have often been discussed as being inducers, enhancers or mediators of these ligninolytic enzymes. It is known that supplementing the growth medium with either Mn²⁺, veratryl alcohol or coal-derived humic acids leads to significantly enhanced extracellular ligninolytic activities. Measuring the amount of expressed mRNA of the two enzymes by quantitative RT-PCR provided evidence that the expression of manganese peroxidase was induced in the three tested white-rot fungi, Clitocybula dusenii b11, Nematoloma frowardii b19, and a straw-degrading strain designated i63–2. Laccase, on the other hand, was expressed in all three fungi with a significant basic activity even without inducer added. However, since the level of laccase mRNA was higher in cultures supplemented with any one of the tested inducers, we conclude that both manganese and the aromatic substances also increase the expression of laccase. Received: 4 February 2000 / Received revision: 11 May 2000 / Accepted: 12 May 2000     

Manganese and malonate are individual regulators for the production of lignin and manganese peroxidase isozymes and in the degradation of lignin by Phlebia radiata

 The effects of high manganese [180 μM Mn(II)] concentration and addition of malonate (10 mM) were studied in nitrogen-limited cultures of the white-rot fungus, Phlebia radiata. High levels of manganese alone showed no systematic influence on the production of lignin peroxidase (LiP), manganese peroxidase (MnP) or laccase. In contrast, high-manganese containing cultures of P. radiata showed lower efficiency in the mineralization of ¹⁴C-ring-labelled synthetic lignin ([¹⁴C]DHP). The highest rates of mineralization, up to 30% in 18 days, were reached in low- manganese(2 μM)-containing cultures when malonate was omitted. Degradation of [¹⁴C]DHP was substantially restricted by the addition of malonate. The combination of high manganese and malonate resulted in increased levels of MnP and laccase production, whereas LiP production was repressed. Also, the profiles of expression of the MnP and LiP isozymes were affected. A new P. radiata MnP isozyme of pI 3.6 (MnP3) was found in the high-manganese cultures. Addition of malonate alone caused some repression but also stimulating effects on distinctive MnP and LiP isozymes. The results indicate that manganese and malonate are individual regulators of MnP and LiP expression and have different roles in the degradation of lignin by P. radiata. Received: 30 August 1995/Received revision: 10 January 1996/Accepted: 12 February 1996     

Mycoremediation (bioremediation with fungi) – growing mushrooms to clean the earth

Abstract

Some of the prospects of using fungi, principally white-rot fungi, for cleaning contaminated land are surveyed. That white-rot fungi are so effective in degrading a wide range of organic molecules is due to their release of extra-cellular lignin-modifying enzymes, with a low substrate-specificity, so they can act upon various molecules that are broadly similar to lignin. The enzymes present in the system employed for degrading lignin include lignin-peroxidase (LiP), manganese peroxidase (MnP), various H₂O₂ producing enzymes and laccase. The degradation can be augmented by adding carbon sources such as sawdust, straw and corn cob at polluted sites.     

Depolymerization of low-rank coal by extracellular fungal enzyme systems. II. The ligninolytic enzymes of the coal-humic-acid-depolymerizing fungus Nematoloma frowardii b19

The production of ligninolytic enzymes was studied in surface cultures of the South American white-rot fungus Nematoloma frowardii b19 and four other strains of this ecophysiological group (Clitocybula dusenii b11, Auricularia sp. m37a, wood isolates u39 and u45), which are able to depolymerize low-rank-coal-derived humic acids with the formation of fulvic-acid-like compounds. The fungi produced the three crucial enzymes of lignin degradation – lignin peroxidase, manganese peroxidase and laccase. In the case of N. frowardii b19, laccase and the two peroxidases could be stimulated by veratryl alcohol. Manganese (II) ions (Mn²⁺) caused a rapid increase of Mn peroxidase activity accompanied by the complete repression of lignin peroxidase. Under nitrogen-limited conditions the growth as well as the production of ligninolytic enzymes was partly repressed. During the depolymerization process of coal humic acids using solid agar media, gradients of ligninolytic enzyme activities toward 2,2′-azinobis(3-ethylbenzthiazoline-6-sulphonate) and syringaldazine were detectable inside the agar medium. Received: 5 August 1996 / Received revision: 13 November 1996 / Accepted: 15 November 1996