When colour patterns reflect phylogeography: New species of Dasypeltis (Serpentes: Colubridae: Boigini) from West Africa

Six colour phases are currently known in the genus Dasypeltis in West Africa, three in the D. scabra complex and three in the D. fasciata complex. Molecular phylogenetic analysis reveals that all correspond to distinct species. D. parascabra sp. nov. is described from wet savannah areas of Guinea and Ivory Coast. D. latericia is given full specific rank. The validity of D. sahelensis, D. gansi and D. confusa – three species recently described on the basis of colour pattern and biogeography – is confirmed. D. fasciata is confined to rain forest areas of West and Central Africa. D. scabra is absent from West Africa.     

Two new species of nematode-trapping fungi: relationships inferred from morphology,rDNA and protein gene sequence analyses

Two new nematode-trapping fungi, Dactylellina sichuanensis and D. varietas from China, which capture nematodes by both adhesive knobs and non-constricting rings, are described and illustrated. D. sichuanensis is characterized by both adhesive knobs and non-constricting rings, solitary conidiophores and 3-(4)-6 septate conidia, as compared with species such as D. appendiculata, D. candida, D. leptospora and D. lysipaga. Although D. sichuanensis shares similar types of trapping devices, the presence of simple conidiophores and spindle-shaped conidia with these species, it can be distinguished by its larger conidia and presence of more than four septa. In D. sichuanensis, a single conidium is born at the tip of conidiophore, while in D. candida, 3–10 conidia are born near the apex of conidiophore in a capitate arrangement. It produces spindle-shaped conidia with 3–6 septa, whereas D. leptospora produces cylindrical-shaped conidia with 5–15 septa. D. appendiculata captures nematodes by adhesive knobs whereas D. sichuanensis captures nematodes by both adhesive knobs and non-constricting rings. They also differ in conidial size (35–82.5 μm in D. sichuanensis as compared with 57–108 μm in D. appendiculata). D. varietas is characterized by conidiophores that are branched at right-angles, and elongate to fusoid conidia, with 7–8 septa (more than 25% of which are curved). D. varietas resembles D. asthenopaga, Dactylella oxyspora and Monacrosporium multiseptatum, but has elongate-fusoid conidia, whereas D. asthenopaga possesses obconical or clavate conidia. D. varietas forms both adhesive knobs and non-constricting rings whereas Dactylella oxyspora does not produce any trapping device. M. multiseptatum differs from D. varietas in having larger conidia with an inflated middle cell. Phylogenetic analyses based on nuclear and protein coding DNA sequences (18 S, and a combined 28 S + 5.8 S + β-tubulin dataset) indicate that these two taxa should be assigned to the family Orbiliaceae.     

Brood Parasitism in Two Species of Spider Wasps (Hymenoptera: Pompilidae, Dipogon), with Notes on a Novel Reproductive Strategy

A trap-nesting study provided the first documentation of brood parasitism in Dipogon nagasei and in D. iwatai. Dipogon nagasei was found to brood parasitize D. sperconsus, D. conspersus, D. inconspersus, and D. bifasciatus. Dipogon iwatai brood parasitized D. sperconsus, D. conspersus, D. romankovae, and Auplopus carbonarius. Both brood parasitic species are with the subgenus Nipponodipogon, whereas all five Dipogon hosts are in the subgenus Deuteragenia. Comparison of their ecological features revealed that brood parasitism in D. nagasei is considerably more derived than in D. iwatai. Of particular note is the fact that in D. nagasei the female routinely lays up to five eggs on a single host spider, all of which develop into adult wasps without larval cannibalism; almost all Pompilidae previously studied lay only one egg on a host spider.     

Mitochondrial phylogenomics and genetic relationships of closely related pine moth (Lasiocampidae: Dendrolimus) species in China,using whole mitochondrial genomes

Background

Pine moths (Lepidoptera; Bombycoidea; Lasiocampidae: Dendrolimus spp.) are among the most serious insect pests of forests, especially in southern China. Although COI barcodes (a standardized portion of the mitochondrial cytochrome c oxidase subunit I gene) can distinguish some members of this genus, the evolutionary relationships of the three morphospecies Dendrolimus punctatus, D. tabulaeformis and D. spectabilis have remained largely unresolved. We sequenced whole mitochondrial genomes of eight specimens, including D. punctatuswenshanensis. This is an unambiguous subspecies of D. punctatus, and was used as a reference for inferring the relationships of the other two morphospecies of the D. punctatus complex. We constructed phylogenetic trees from this data, including twelve published mitochondrial genomes of other Bombycoidea species, and examined the relationships of the Dendrolimus taxa using these trees and the genomic features of the mitochondrial genome.

Results

The eight fully sequenced mitochondrial genomes from the three morphospecies displayed similar genome structures as other Bombycoidea species in terms of gene content, base composition, level of overall AT-bias and codon usage. However, the Dendrolimus genomes possess a unique feature in the large ribosomal 16S RNA subunits (rrnL), which are more than 60 bp longer than other members of the superfamily and have a higher AC proportion. The eight mitochondrial genomes of Dendrolimus were highly conservative in many aspects, for example with identical stop codons and overlapping regions. But there were many differences in start codons, intergenic spacers, and numbers of mismatched base pairs of tRNA (transfer RNA genes).Our results, based on phylogenetic trees, genetic distances, species delimitation and genomic features (such as intergenic spacers) of the mitochondrial genome, indicated that D. tabulaeformis is as close to D. punctatus as is D. punctatus wenshanensis, whereas D. spectabilis evolved independently from D. tabulaeformis and D. punctatus. Whole mitochondrial DNA phylogenies showed that D. spectabilis formed a well-supported monophyletic clade, with a clear species boundary separating it from the other congeners examined here. However, D. tabulaeformis often clustered with D. punctatus and with the subspecies D. punctatus wenshanensis. Genetic distance analyses showed that the distance between D. tabulaeformis and D. punctatus is generally less than the intraspecific distance of D. punctatus and its subspecies D. punctatus wenshanensis. In the species delimitation analysis of Poisson Tree Processes (PTP), D. tabulaeformis, D. punctatus and D. punctatus wenshanensis clustered into a putative species separated from D. spectabilis. In comparison with D. spectabilis, D. tabulaeformis and D. punctatus also exhibit a similar structure in intergenic spacer characterization. These different types of evidence suggest that D. tabulaeformis is very close to D. punctatus and its subspecies D. punctatus wenshanensis, and is likely to be another subspecies of D. punctatus.

Conclusions

Whole mitochondrial genomes possess relatively rich genetic information compared with the traditional use of single or multiple genes for phylogenetic purposes. They can be used to better infer phylogenetic relationships and degrees of relatedness of taxonomic groups, at least from the aspect of maternal lineage: caution should be taken due to the maternal-only inheritance of this genome. Our results indicate that D. spectabilis is an independent lineage, while D. tabulaeformis shows an extremely close relationship to D. punctatus.

Electronic supplementary material

The online version of this article (doi:10.1186/s12864-015-1566-5) contains supplementary material, which is available to authorized users.     

Sexual Interactions Between Two Distantly Related Drosophila Species, D. melanogaster and D. willistoni (Diptera: Drosophilidae)

Molecular analysis suggests that the pomace fly Drosophila melanogaster acquired the P family of transposable elements from another Drosophila species, D. willistoni. Since the two species are distantly related, it has been assumed that transmission of P element DNA from D. willistoni to D. melanogaster was mediated by a vector. The possibility of an alternative mode of transmission was assessed by characterizing the sexual behaviors of D. willistoni males and females, then observing D. willistoni and D. melanogaster males and females to see whether males from one species interacted sexually with females from the other species in a laboratory setting. We observed that D. melanogaster males court D. willistoni females vigorously and, in some cases, stimulate the females to be receptive to copulation. However, D. willistoni males perform relatively little courtship in response to D. melanogaster females and do not attempt to copulate. Thus, it is unlikely that sexual interactions effected the transmission of P element DNA from D. willistoni to D. melanogaster in the flies' natural habitat.     

Chromosomal evolution in the Drosophila cardini group (Diptera: Drosophilidae): photomaps and inversion analysis

Detailed chromosome photomaps are the first step to develop further chromosomal analysis to study the evolution of the genetic architecture in any set of species, considering that chromosomal rearrangements, such as inversions, are common features of genome evolution. In this report, we analyzed inversion polymorphisms in 25 different populations belonging to six neotropical species in the cardini group: Drosophila cardini, D. cardinoides, D. neocardini, D. neomorpha, D. parthenogenetica and D. polymorpha. Furthermore, we present the first reference photomaps for the Neotropical D. cardini and D. parthenogenetica and improved photomaps for D. cardinoides, D. neocardini and D. polymorpha. We found 19 new inversions for these species. An exhaustive pairwise comparison of the polytene chromosomes was conducted for the six species in order to understand evolutionary patterns of their chromosomes.     

Aedeagal Divergence in Sympatric Populations of Two Sibling Species of Cactophilic Drosophila (Diptera: Drosophilidae): Evidence of Character Displacement?

Aedeagal morphology of two sibling cactophilic species, Drosophila buzzatii Patterson & Wheeler and Drosophila koepferae Fontdevila & Wasserman, was analyzed in nine allopatric and three sympatric locations throughout South America. Morphological differences were detected for both aedeagus size and shape between sympatric and allopatric populations of D. buzzatii, despite the significant variability within both groups. Populations of D. buzzatii sympatric with D. koepferae displayed smaller aedeagus than the allopatric ones as well as more differentiated aedeagus shape. The shape differences were non-allometric and mainly consisted in a change of curvature of the dorsal margin of the aedeagus being more pronounced in males from populations sympatric with D. koepferae. It is concluded that aedeagal morphology presented some degree of character displacement in both size and shape in populations of D. buzzatii in sympatry with D. koepferae. These results might suggest the existence of mechanisms of interspecific recognition and hybridization prevention between these species that include the morphology of the male genitalia.     

Host selection,host-use pattern and competition in Dissodactylus crinitichelis and Clypeasterophilus stebbingi (Brachyura: Pinnotheridae)

The genera Dissodactylus and Clypeasterophilus are commensal or parasitic crabs that live in association with irregular sea urchins. Only a single pinnotherid species is expected to occur on a sand dollar; however, during field observations, D. crinitichelis and Clypeasterophilus stebbingi were found co-occurring on a single host (Clypeaster subdepressus). Laboratory experiments and in situ observations were conducted to explore mechanisms of host selection and use by C. stebbingi, as well as the possibility of competition with D. crinitichelis. Analysis of 213 specimens of Encope emarginata and 33 C. subdepressus revealed a high frequency of infestation (90 %) by brachyurans. The number of D. crinitichelis was positively correlated with the size of E. emarginata. During field observations and experiments, D. crinitichelis was able to colonize both echinoids, while C. stebbingi was found mainly on C. subdepressus. No exclusion was reported between individuals of the same sex for both crab species. However, D. crinitichelis may be territorial, since a single male occurred when adult females were added to the host. D. crinitichelis and C. stebbingi co-occurred on the same individual of C. subdepressus on rare occasions during field observations. C. stebbingi may exclude D. crinitichelis from the echinoid to avoid competition, as observed during the experiments. We suggest a species-specific association between C. stebbingi and C. subdepressus, while D. crinitichelis associated mainly with E. emarginata, but also with C. subdepressus. Both crabs may harm the echinoids by consuming their spines, but additional research is necessary to determine whether this is a parasitic association.     

A new genus and two new nematode species (Drilonematoidea: Ungellidae: Synoecneminae) parasitic in two morphs of Drawida ghilarovi Gates,endemic earthworm from the Russian Far East

Drasico n. g. is erected to accommodate two new species of nematode, Drasico nemoralis n. sp. and D. paludigenus n. sp., recovered from coelomic cavities of Drawida ghilarovi Gates, endemic earthworms of the Russian Far East. The new genus is characterised by the following unique for the Synoecneminae characters: apical portion of the head attenuated, cephalic hooks displaced to the base of attenuated portion, amphids displaced posterior to cephalic hooks, excretory duct short and weak, males possessing several genital papilliform sensilla. The new species are differentiated by the size, number and disposition of the male genital sensilla (larger and more numerous in D. nemoralis n. sp.); the body shape of females (with thinner neck and wider mid-body in D. paludigenus n. sp.) and the ovarian tube arranged in transversal folds in D. paludigenus (vs longitudinal folds in D. nemoralis n. sp.). Nucleotide sequences of D2–D3 expansion segment of 28S rDNA for the two new species differed at 13 positions. Phylogenetic analysis revealed close relationships of Drasico n. g. with species of Siconema Timm, 1966. The host species was represented by two morphs (blue-grey forest and tar-black meadow-swamp morph) with intraspecific divergence of 16–17% for cytochrome c oxidase subunit 1 (COI) gene, and each host morph was found infected by a different nematode species. A co-infection with the plectid nematode Creagrocercus drawidae Ivanova & Spiridonov, 2011 was recorded together with D. nemoralis n. sp. in the blue-grey forest morph.     

Coccidial dispersion across New World marsupials: Klossiella tejerai Scorza,Torrealba & Dagert, 1957 (Apicomplexa: Adeleorina) from the Brazilian common opossum Didelphis aurita (Wied-Neuwied) (Mammalia: Didelphimorphia)

Klossiella tejerai Scorza, Torrealba & Dagert, 1957 is a primitive coccidian parasite reported from the New World marsupials Didelphis marsupialis (Linnaeus) and Marmosa demerarae (Thomas). The current work describes K. tejerai from the Brazilian common opossum Didelphis aurita (Wied-Neuwied) in Southeastern Brazil, evidencing the coccidial dispersion across opossums of the same family. The sporocysts recovered from urine samples were ellipsoidal, 20.4 × 12.7 µm, with sporocyst residuum composed of scattered spherules and c.13 sporozoites per sporocyst, with refractile bodies and nucleus. Macrogametes, microgametes, sporonts, sporoblasts/sporocysts were identified within parasitophorous vacuoles of epithelial cells located near the renal corticomedullary junction. Didelphis marsupialis should not have transmitted K. tejerai to D. aurita because they are not sympatric; however M. demerarae is sympatric with D. marsupialis and D. aurita. Therefore, D. aurita becomes the third host species for K. tejerai in South America.     

ISD1, an Insertion Element from the Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough: Structure, Transposition, and Distribution

Insertion element ISD1, discovered when its transposition caused the insertional inactivation of an introduced sacB gene, is present in two copies in the genome of Desulfovibrio vulgaris Hildenborough. Southern blot analysis indicated at least two insertion sites in the sacB gene. Cloning and sequencing of a transposed copy of ISD1 indicated a length of 1,200 bp with a pair of 44-bp imperfect inverted repeats at the ends, flanked by a direct repeat of the 4-bp target sequence. AAGG and AATT were found to function as target sequences. ISD1 encodes a transposase from two overlapping open reading frames by programmed translational frameshifting at an A₆G shifty codon motif. Sequence comparison showed that ISD1 belongs to the IS3 family. Isolation and analysis of the chromosomal copies, ISD1-A and ISD1-B, by PCR and sequencing indicated that these are not flanked by direct repeats. ISD1-A is inserted in a region of the chromosome containing the gapdh-pgk genes (encoding glyceraldehyde-3-phosphate dehydrogenase and phosphoglycerate kinase). Active transposition to other loci in the genome was demonstrated, offering the potential of a new tool for gene cloning and mutagenesis. ISD1 is the first transposable element described for the sulfate reducers, a large and environmentally important group of bacteria. The distribution of ISD1 in genomes of sulfate-reducing bacteria is limited. A single copy is present in the genome of D. desulfuricans Norway.     

Testing the hypothesis that a cochineal insect species (Hemiptera: Dactylopiidae) may have been displaced by a congeneric biological control agent from a different cactus host

In 1913, a cochineal insect species, Dactylopius ceylonicus (Green) (Hemiptera: Dactylopiidae), was released in South Africa as a biological control agent against drooping prickly pear Opuntia monacantha. Later, in 1938, Dactylopius opuntiae (Cockerell) was used, together with several other biological control agents, to suppress populations of mission prickly pear, Opuntia ficus-indica. Both programmes achieved considerable success in alleviating these weed problems. In common with some other cochineal insect species, D. opuntiae is oligophagous which has led to allegations that it has competitively displaced D. ceylonicus on O. monacantha in South Africa. An investigation into this supposition showed that D. ceylonicus is still present at all of the seven sites where O. monacantha was monitored and that D. opuntiae was not found to occur on O. monacantha at any of the sites. Although D. opuntiae is able to use both O. monacantha and O. ficus-indica as hosts, under laboratory conditions its performance (developmental duration, survival and body mass of the females at maturity) was significantly inferior to that of D. ceylonicus on O. monacantha. These observations show that there is no evidence of the actual or potential displacement of D. ceylonicus by D. opuntiae on O. monacantha.