自噬基因CTSL表达与胶质母细胞瘤患者预后相关

本研究旨在探讨自噬基因CTSL对胶质母细胞瘤(GBM)患者的预后影响。利用癌症基因组图谱(TCGA)、人类自噬数据库(HADB)、中国脑胶质瘤基因组图谱(CGGA)数据库、基因表达谱分析(GEPIA)获取数据信息,通过筛选差异表达基因及单因素和多因素COX分析确定GBM的独立预后危险因素,同时通过基因本体论(GO)、基因组百科全书途径(KEGG)、临床病理相关性、基因集富集分析(GSEA)、自噬基因网络分析CTSL的相关作用机制。结果显示:(1)富集分析显示胶质母细胞瘤中差异自噬基因(ARG)与自噬体的形成、细胞凋亡、血管生成、细胞化疗等相关;(2)GBM中CTSL的mRNA水平明显高于正常组织样本;(3)多因素COX回归分析显示自噬基因CTSL的高表达为GBM预后的独立危险因素,STUPP治疗(术后替莫唑胺[Tmz]同步放化疗+Tmz辅助化疗)为独立保护因素;(4)自噬基因CTSL在非GCIMP(CpG岛甲基化)型、间质型、IDH野生型、1p/19q无缺失型胶质母细胞瘤及化疗后表达量更高。综上所述,本研究分析了自噬基因在GBM中的作用,并表明自噬基因CTSL的过表达预示胶质母细胞瘤患者不良预后,显示自噬基因CTSL有作为有效靶标的潜质。     

肝细胞癌患者自噬相关基因的预后作用

构建由自噬相关基因组成的预后模型,预测肝细胞癌(HCC)患者的生存预后情况,为其个性化诊疗和临床研究提供依据.利用TCGA数据库中HCC的测序信息与人类自噬数据库联合,筛选差异表达的自噬相关基因,对其进行GO富集与KEGG通路分析;通过单因素与多因素Cox分析筛选与患者生存预后明显相关的风险基因,构建预后风险评分模型;...     

多发性骨髓瘤恶性相关基因快速表达克隆法的建立

为从多发性骨髓瘤细胞中克隆与鉴定恶性相关基因并试图阐明其发病分子机制,建立了一种改进的快速表达克隆法,简单、快捷、直接从多发性骨髓瘤细胞株ARH-77 cDNA文库中克隆恶性相关基因。其特点是常用的表达克隆法与经典的DNA介导的NIH／3T3转染实验相结合,直接从cDNA表达文库中克隆恶性相关基因。首先建立高质量的cDNA表达文库,将cDNA表达文库分成几个基因池,转染NIH／3T3细胞;将转化活性最强的基因池再分成几个亚基因池,转染NIH／3T3细胞;将转化活性最强的亚基因池再分成次级亚基因池,直到获得有明显转化活性的单个cDNA克隆。该技术亦可用于从其他肿瘤细胞中克隆恶性相关基因。     

自噬的相关分子机制

细胞自噬是真核生物中高度保守的一类生物学途径,它通过降解细胞浆内不同组分,维持细胞自身平衡并帮助细胞在应激情况下生存。自噬在生物体生长发育、免疫防御、肿瘤抑制及神经退行性疾病中都有重大的意义。哺乳动物细胞中,自噬过程主要由自噬相关蛋白（Atg）所形成的一系列复合物所调控,这些蛋白质分别在自噬的启动、自噬泡的形成、延伸及成熟和降解过程中发挥重要的作用。在此,本文针对一些重要的自噬相关蛋白质对近年来自噬分子机制的研究进展做一总结。     

抑制自噬促进冬凌草甲素诱导的多发性骨髓瘤细胞凋亡涉及胞内ROS产生

目的本实验主要研究冬凌草甲素诱导多发性骨髓瘤发生自噬、凋亡,两者之间的关系以及所涉及的相关机制。方法利用MTT比色法检测冬凌草甲素对多发性骨髓瘤RPMI8226细胞的增殖活性影响;透视电镜观察细胞内凋亡和自噬的形态学改变;TUNEL检测细胞凋亡;分别利用以下技术检测处理后的细胞内的自噬变化:使用QDs605nm-Anti-LC3荧光探针以及免疫荧光技术定位细胞胞内LC3Ⅰ和LC3Ⅱ蛋白,利用western blot免疫印记技术检测Beclin 1蛋白表达水平;利用DCFH-DA探针以及流式细胞术检测细胞胞内ROS水平。结果冬凌草甲素能明显抑制RPMI8226细胞增殖,其抑制作用呈时间、剂量依赖性;冬凌草甲素能同时诱发细胞凋亡、自噬和胞内ROS产生;NAC完全抑制胞内ROS产生后冬凌草甲素诱导的细胞凋亡消失;3-MA抑制自噬后,冬凌草甲素诱导的胞内ROS产生进一步增多,凋亡增多。结论冬凌草甲素能明显抑制RPMI8226细胞增殖;冬凌草甲素同时诱发细胞凋亡和自噬;胞内ROS产生介导冬凌草甲素诱导的凋亡;凋亡为细胞死亡的主要途径,而自噬通过下调胞内ROS产生抑制凋亡。     

自噬相关基因ATG5在感染和炎症性疾病中的作用

自噬对生物体维持细胞内环境具有至关重要的作用。目前已经证实自噬广泛参与多种疾病的发生发展过程,例如肿瘤、免疫性疾病以及炎症性疾病等,其与炎症性疾病相关性更加密切,也是近年来的研究热点。自噬相关基因(ATGs)参与调节自噬的许多方面,其中ATG5主要参与自噬小体的双层膜弯曲,对自噬的发生起决定性作用。本文主要概述近年研究发现ATG5在炎症性疾病中的机制,并探讨自噬其作为炎症性疾病治疗方向的可能性,为炎症性疾病的诊治提供新的思路。     

细胞自噬与病毒感染

自噬是广泛存在于真核细胞内的一种溶酶体依赖性降解途径,在维持细胞存活、更新、物质再利用和内环境稳定中起着重要作用。目前已经发现大量新的自噬相关基因,同时发现自噬在病毒感染过程中发挥着重要的抗病毒作用:自噬可以将胞质中的病毒转运到溶酶体中,降解病毒;也可以将病毒核酸转运至胞内感受器上激活天然免疫;还可以将病毒抗原递呈给MHCⅡ类分子激活适应性免疫。自噬参与胞内微生物感染具有双重作用。一方面,自噬能够降解入侵的微生物,即以异源吞噬(xenophagy)的方式清除胞内的病原体;另一方面,有些微生物能够通过某些机制逃避自噬而利于自身存活。本文就细胞自噬及其与不同病毒感染关系的最新研究进展进行综述。     

自噬的相关分子机制北大核心CSCD

细胞自噬是真核生物中高度保守的一类生物学途径,它通过降解细胞浆内不同组分,维持细胞自身平衡并帮助细胞在应激情况下生存。自噬在生物体生长发育、免疫防御、肿瘤抑制及神经退行性疾病中都有重大的意义。哺乳动物细胞中,自噬过程主要由自噬相关蛋白(Atg)所形成的一系列复合物所调控,这些蛋白质分别在自噬的启动、自噬泡的形成、延伸及成熟和降解过程中发挥重要的作用。在此,本文针对一些重要的自噬相关蛋白质对近年来自噬分子机制的研究进展做一总结。     

茄子自噬相关基因ATG8家族鉴定及表达分析

自噬相关基因ATG8在调节植物生长发育和胁迫响应中发挥着关键作用。本研究通过生物信息学技术分析ATG8在茄子基因组中的分布、结构及进化等,并研究了其在茄子不同组织、外源激素和冷处理下的表达情况。结果表明,从茄子基因组中共鉴定到7个ATG8基因,分布在6条染色体上。理化性质分析显示茄子ATG8基因编码的蛋白包含118~166个氨基酸残基,等电点在6.29~9.16之间;基因结构和保守基序分析表明,ATG8基因家族成员具有保守的基因结构和蛋白基序;启动子区域含有多种激素响应和逆境响应的顺式作用元件;茄子中有3对ATG8基因存在共线关系;茄子与拟南芥和番茄ATG8基因家族成员间分别存在10和11对共线关系。组织表达分析表明茄子ATG8主要在不同的花器官中表达,表明其可能与茄子花发育有关;此外,表达模式分析结果显示7个茄子ATG8基因对冷胁迫和ABA、MeJA、SA等外源激素均有不同程度的响应,表明ATG8基因家族在茄子生长发育、胁迫和激素响应中具有重要的功能。     

基于转录组测序的Cd胁迫下芹菜细胞自噬相关基因的筛选

细胞自噬是植物逆境应答过程中最常见的保护机制之一。动物中,自噬相关基因抵御镉(Cd)毒害的功能研究较清楚,但植物却知之甚少。文中以芹菜品种‘皇后’为试材,采用外源Cd(终浓度为0、2、4、8mg/L)添加营养液水培处理,利用转录组测序(RNA-seq)技术筛选细胞自噬相关差异基因并进行q RT-PCR验证。结果表明Cd胁迫对芹菜植株产生了明显的毒害作用,并与浓度间产生了量效关系。在筛选的8个差异表达的自噬相关基因中,ATG8a、ATG8f、ATG13、AMPK-1、AMPK-2基因随Cd浓度升高表达上调,ATG12、VPS30和VPS34则先上调后下降,说明自噬相关基因可能通过表达上调增加了自噬小体结构以抵御Cd毒性作用;而高浓度Cd(8mg/L)可能超出芹菜的耐受范围,导致多个自噬基因又出现表达下调趋势。以上结果有助于后期自噬相关基因的功能研究,为进一步探讨芹菜对Cd胁迫的耐性机制提供参考依据。     

Identification and validation of autophagy-related prognostic signature for head and neck squamous cell carcinoma

BackgroundMany studies have demonstrated that autophagy plays a significant role in regulating tumor growth and progression. However, the effect of autophagy-related genes (ARGs) on the prognosis have rarely been analyzed in head and neck squamous cell carcinoma (HNSCC).MethodsWe obtained differentially expressed ARGs from HNSCC mRNA data in The Cancer Genome Atlas (TCGA) database. And then we performed gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses to explore the autophagy-related biological functions. The overall survival (OS)-related and disease specific survival (DSS)-related ARGs were identified by univariate Cox regression analyses. With these genes, we established OS-related and DSS-related risk signature by LASSO regression method, respectively. We validated the reliability of the risk signature with receiver operating characteristic (ROC) analysis, Kaplan-Meier survival curves, clinical correlation analysis, and nomogram. Then we analyzed relationships between risk signature and immune cell infiltration.ResultsWe established the prognostic signatures based on 14 ARGs for OS and 12 ARGs for DSS. The ROC curves, survival analysis, and nomogram validated the predictive accuracy of the models. Clinic correlation analysis showed that the risk group was closely related to Stage, pathological T stage, pathological N stage and human papilloma virus (HPV) subtype. Cox regression demonstrated that the risk score was an independent predictor for the prognosis of HNSCC patients. Furthermore, patients in low-risk score group exhibited higher immunescore and distinct immune cell infiltration than high-risk score group. And we further analysis revealed that the copy number alterations (CNAs) of ARGs-based signature affected the abundance of tumor-infiltrating immune cells.ConclusionIn this study, we identified novel autophagy-related signature for the prediction of OS and DSS in patients with HNSCC. Meanwhile, our study provides a novel sight to understand the role of autophagy and elucidate the important role of autophagy in tumor immune microenvironment (TIME) of HNSCC.     

AURKA is a potential target for multiple myeloma therapy

Multiple myeloma (MM) is an incurable disease with the second most frequent hematopoietic malignancy. In this study, we found that the expression of Aurora kinase A (AURKA) was significantly increased in patients with high-risk multiple myeloma, especially in proliferation subgroups. MLN8237, a small molecule AURKA inhibitor, inhibited MM cell proliferation by inducing cell apoptosis and injury. Thus, we speculate MLN8237 is a potential therapeutic agent for MM and AURKA may be a potential target for MM treatment.     

Identification of key candidate genes and pathways in multiple myeloma by integrated bioinformatics analysis

Multiple myeloma (MM) is a common hematologic malignancy for which the underlying molecular mechanisms remain largely unclear. This study aimed to elucidate key candidate genes and pathways in MM by integrated bioinformatics analysis. Expression profiles GSE6477 and GSE47552 were obtained from the Gene Expression Omnibus database, and differentially expressed genes (DEGs) with p < .05 and [logFC] > 1 were identified. Functional enrichment, protein–protein interaction network construction and survival analyses were then performed. First, 51 upregulated and 78 downregulated DEGs shared between the two GSE datasets were identified. Second, functional enrichment analysis showed that these DEGs are mainly involved in the B cell receptor signaling pathway, hematopoietic cell lineage, and NF-kappa B pathway. Moreover, interrelation analysis of immune system processes showed enrichment of the downregulated DEGs mainly in B cell differentiation, positive regulation of monocyte chemotaxis and positive regulation of T cell proliferation. Finally, the correlation between DEG expression and survival in MM was evaluated using the PrognoScan database. In conclusion, we identified key candidate genes that affect the outcomes of patients with MM, and these genes might serve as potential therapeutic targets.     

Modification of the bone marrow MSC population in a xenograft model of early multiple myeloma

Multiple myeloma (MM) is a hematological malignancy characterized by clonal proliferation of abnormal plasma cells. MM dysregulates the homeostasis of the bone niche cells like osteoclasts and osteoblasts, responsible for the bone maintenance leading to bone loss and hypercalcemia, as well as the normal immune cells leading to immunodeficiency and anemia. Osteoblasts are part of the cell population differentiating from mesenchymal stem cells (MSC). MSC also gives rise to other cell types such as adipocytes and chondrocytes. It has been observed that adipocytes support MM growth by increasing its survival and chemo-resistance. As adipocytes originate from MSC, the understanding of early modifications in the MSC population during the disease progression is of paramount importance and may help for early diagnosis of MM. Herein, we have evaluated the modification of the MSC population in the bone niche in an in vivo model of MM. Our results showed that before an observable engraftment of MM in the bone niche, the proportion of MSC population is significantly decreased, while a significant increase in adipocyte related genes such as PPARγ and CEBPα expression appears, with no difference in osteogenic differentiation. These results suggest that the bone niche is switching to a “fatty” marrow which would create an adequate microenvironment for MM. This led us to screen for and identify modulated adipokines in the sera of this in vivo MM-mice model. Such changes could reflect early signs of MM and potentially be exploited as detection biomarkers of the disease.     

Sex hormones and immune dysregulation in multiple myeloma

A group of 49 multiple myeloma patients, 20 men and 29 women, were evaluated. Follicle-stimulating hormone (FSH), luteinizing hormone (LH), 17-oestradiol (E) and testosterone (T) serum concentrations have been detected by radioimmunoassay. Peripheral blood lymphocyte proliferation in response to phytohaemagglutinin (PHA), concanavalin A (ConA), recombinant interleukin-2 (rIL-2) and dextran sulphate (DxS) was investigated. Our findings provide evidence for two different patterns of sex hormone changes and immune dysfunctions presented differently by male and female multiple myeloma patients. In men increased FSH, LH and E concentrations and an augmented E to T ratio were associated with decreased lymphocyte blastogenic response to PHA, ConA and increased proliferation to rIL-2 and DxS. Female patients with multiple myeloma demonstrated normal values of FSH, LH and T, but a diminished E level and decreased E to T ratio correlated with a lymphocyte normal response to PHA and ConA and augmented blastogenesis to IL-2 and DxS. Our data, while admittedly preliminary, suffice to provide an indication of sex hormone changes in multiple myeloma patients, which could be responsible, at least in part, for the immune dysfunction observed in multiple myeloma.     

多发性骨髓瘤患者医院感染临床分析

目的 探讨多发性骨髓瘤患者医院感染的临床状况和危险因素。方法 对1994年1月～2001年12月收治的62例多发性骨髓瘤患者医院感染发生情况进行调查分析。结果 多发性骨髓瘤患者发生医院感染33例。感染发生率为53．2％,好发部位为呼吸道、口腔、胃肠道和泌尿道等。结论 多发性骨髓瘤患者医院感染的发生与骨髓瘤细胞含量、疾病Ⅲ期、骨损害、白细胞减少、化疗及住院日等因素有关。应采取相应措施,避免医院感染发生。     

免疫固定电泳在诊断多发性骨髓瘤中的作用

目的 探讨分析免疫固定电泳在诊断多发性骨髓瘤（MML）中的作用。方法 以2014年10月至2016年10月丽水市人民医院收治的110例需进行免疫固定电泳检测的患者为研究对象,对其进行血清M蛋白和浓缩尿中M蛋白的检测,筛选出两种检测均显阳性的患者,并将检测结果与临床资料相比较,对比血清M蛋白和浓缩尿中M蛋白的检测阳性与多发性骨髓瘤之间的关系。结果 110例需进行免疫固定电泳检测的患者中,经临床资料分析,有34例患者为多发性骨髓瘤。这34例患者血清M蛋白的检测显阳性,临床诊断符合率为100.00%;25例患者浓缩尿中M蛋白的检测显阳性,临床诊断符合率为73.53%。血清检验的临床符合率较尿液检验更好,差异具有统计学意义（P＜0.05）;34例血清M蛋白的检测显阳性的患者中,IgG型21例（61.76%）,IgA型8例（23.53%）,IgM型3例（8.82%）,γ轻链型2例（5.88%）。结论 MML患者采用血清及尿液免疫固定电泳检测,血清M蛋白检测阳性率较浓缩尿中M蛋白的检测阳性率要高,血清及尿液进行的免疫固定电泳检测对MML的诊断、检测及预后判断具有重要的提示作用,临床工作者可以根据电泳图谱对MML进行分型,并制定个体化的治疗方案。     

急性髓系白血病铁死亡相关基因筛选及预后模型的建立

基于急性髓系白血病(Acute Myeloid Leukemia,AML)临床大数据及多组学数据库探讨铁死亡相关基因在AML中的作用,并建立铁死亡基因表达相关预后模型。整合TCGA数据库中151例AML患者和GTEx数据库中337例正常人外周血的临床和转录组数据。将Wilcoxon检验和单因素Cox分析结果取交集,筛选出预后相关差异表达基因(Differential Expression Genes, DEGs),使用Lasso回归建立基因标志物预后模型,利用受试者工作特征曲线(Receiver Operating Characteristic Curve,ROC曲线)评价预测价值,Kaplan-Meier法进行生存分析,对AML患者临床数据进行单因素和多因素Cox回归分析,使用差异基因表达分析等方法比较高、低风险患者间的组学差异,最后,利用BeatAML数据库对基因标志物进行验证。将差异基因表达分析和单因素分析结果取交集,得到13个预后相关DEGs。构建了8个基因标志物的预后评分模型,并将患者分为高、低风险两组;ROC曲线分析证实了模型良好的预测性能;生存分析提示高、低风险组患者的生存率具有显著差异;单因素分析显示年龄和风险评分与患者整体生存显著相关,多因素分析显示,年龄和风险评分是独立预后指标。在2个风险组之间筛选出384个DEGs,GO富集分析结果显示,富集的基因大多与中性粒细胞和白细胞的趋化与迁移等免疫相关分子和通路显著相关,KEGG富集通路主要与TNF信号通路、细胞因子与细胞因子受体相互作用相关。BeatAML数据库验证结果显示,5个基因与预后显著相关。铁死亡相关基因在AML中显著表达,且高风险患者预后较差,该研究对AML铁死亡相关潜在生物标志物的发现和应用奠定了一定的基础。     

Establishment of a new model of human multiple myeloma using NOD/SCID/gammac(null) (NOG) mice

We developed a new experimental animal model of human multiple myeloma using immunodeficient NOD/SCID/gammac(null) (NOG) mice. A human myeloma cell line, U266, was intravenously inoculated into 20 NOG mice, all of which developed hind leg paralysis and distress around 6 weeks after transplantation. Pathological studies showed that only the bone marrow was infiltrated with U266 cells, and no cells were present in other organs. Osteolytic lesions in cortical bones and loss of trabecular bones were prominent in U266-transplanted NOG mice. In contrast, U266 cells were not detected in CB17scid or NOD/SCID mice 6 weeks after intravenous inoculation. Human IgE, produced by U266 cells, was detected in the serum of U266-transplanted NOG mice by ELISA. The results indicated that this hu-myeloma NOG model might be useful for studying the pathogenesis of myeloma and related osteolytic lesions, and are suggestive of its applicability to the future development of new drugs.     

Synthesis and biological evaluation of the natural product komaroviquinone and related compounds aiming at a potential therapeutic lead compound for high-risk multiple myeloma

Alternatives of treatments for multiple myeloma (MM) have become increasingly available with the advent of new drugs such as proteasome inhibitors, thalidomide derivatives, histone deacetylase inhibitors, and antibody drugs. However, high-risk MM cases that are refractory to novel drugs remain, and further optimization of chemotherapeutics is urgently needed.We had achieved asymmetric total synthesis of komaroviquinone, which is a natural product from the plant Dracocephalum komarovi. Similar to several leading antitumor agents that have been developed from natural compounds, we describe the antitumor activity and cytotoxicity of komaroviquinone and related compounds in bone marrow cells. Our data suggested that komaroviquinone-related agents have potential as starting compounds for anticancer drug development.