Dynamics of Chemical Diversity during Co-Cultures: An Integrative Time-Scale Metabolomics Study of Fungal Endophytes Cophinforma mamane and Fusarium solani

A rapid and efficient metabolomic study of Cophinforma mamane and Fusarium solani co-cultivation in time-series based analysis was developed to study metabolome variations during their fungal interactions. The fungal metabolomes were studied through the integration of four metabolomic tools: MS-DIAL, a chromatographic deconvolution of liquid-chromatography-mass spectrometry (LC/MS); MS-FINDER, a structure-elucidation program with a wide range metabolome database; GNPS, an effective method to organize MS/MS fragmentation spectra, and MetaboAnalyst, a comprehensive web application for metabolomic data analysis and interpretation. Co-cultures of C. mamane and F. solani induced different patterns of metabolite production over 10 days of incubation and induced production of five de novo compounds not occurring in monocultures. These results emphasize that co-culture in time-frame analysis is an interesting method to unravel hidden metabolome in the investigation of fungal chemodiversity.     

Diversity,Molecular Phylogeny,and Bioactive Potential of Fungal Endophytes Associated with the Himalayan Blue Pine (Pinus wallichiana)

In this study, we investigated the diversity of fungal endophytes associated with Pinus wallichiana from the Western Himalayas, with emphasis on comparison of endophytic communities harbored by the stem and needle tissues of the host and their antimicrobial potential. A total number of 130 isolates, comprising of 38 different genera, were recovered from 210 fragments of the plant. Among the isolated fungi, only a single isolate, Tritirachium oryzae, belonged to the Phylum Basidiomycota whereas the rest belonged to Ascomycota. Dothideomycetes was the dominant class with the highest isolation frequency of 49.2 %. The most frequent colonizers of the host were Alternaria spp., Pestalotiopsis spp., Preussia spp., and Sclerostagonospora spp. The diversity and species richness were higher in needle tissues than in the stems. Antimicrobial activities were displayed by extracts from a total number of 22 endophytes against one or more pathogens. Endophytes designated as P1N13 (Coniothyrium carteri), P2N8 (Thielavia subthermophila), P4S6b (Truncatella betulae), P7N10 (Cochliobolus australiensis), and P8S4 (Tritirachium oryzae) were highly active against Candida albicans. Broad spectrum antimicrobial activities were obtained with the extracts of P8-S4 (Tritirachium oryzae) and P5-N26 (Coniochaeta gigantospora) that were potentially active against the Gram-positive and Gram-negative bacteria as well as the fungal pathogen, Candida albicans. The most prominent antagonistic activity against fungal pathogens was shown by P8-S4 (Tritirachium oryzae), P5-N31a (Truncatella spadicea), and P5-N20 (Fusarium larvarum). Our findings indicate that Pinus wallichiana harbors a rich endophytic fungal community with potential antimicrobial activities. Further studies are needed to understand the ecology and evolutionary context of the associations between the Himalayan pine and its endophytes.     

Chemical Diversity in the Genus Alpinia (Zingiberaceae): Comparative Composition of Four Alpinia Species Grown in Northern India

The essential‐oil compositions of leaves, flowers, and rhizomes of Alpinia galanga (L.) Willd ., Alpinia calcarata Rosc ., Alpinia speciosa K. Schum. , and Alpinia allughas Rosc . were examined and compared by capillary GC and GC/MS. Monoterpenoids were the major oil constituents identified. 1,8‐Cineole, α‐terpineol, (E)‐methyl cinnamate, camphor, terpinen‐4‐ol, and α‐ and β‐pinenes were the major constituents commonly distributed in leaf and flower essential oils. The presence of endo‐fenchyl acetate, exo‐fenchyl acetate, and endo‐fenchol was the unique feature of rhizome essential oils of A. galanga, A. calcarata, and A. speciosa. On contrary, the rhizome oil of A. allughas was dominated by β‐pinene. Significant qualitative and quantitative variations were observed in essential‐oil compositions of different parts of Alpinia species growing in subtemperate and subtropical regions of Northern India. Cluster analysis was performed to find similarities and differences in essential‐oil compositions based on representative molecular skeletons. Monoterpenoids, viz., 1,8‐cineole, terpinen‐4‐ol, camphor, pinenes, (E)‐methyl cinnamate, and fenchyl derivatives, were used as chemotaxonomic markers.     

Compatibility of Inherent Fungal Endophytes of Withania somnifera with Trichoderma viride and its Impact on Plant Growth and Withanolide Content

Journal of Plant Growth Regulation - Withania somnifera (Ashwagandha), also known as Indian ginseng, is an important ancient medicinal plant, used in the Indian traditional systems of medicine. In...     

Atomic Diversity,Molecular Diversity,and Chemical Diversity: The Concept of Chemodiversity

This minireview is meant as an introduction to the following paper. To this end, it presents the general background against which the joint paper should be understood. The first objective of the present paper is thus to clarify some concepts and related terminology, drawing a clear distinction between i) atomic diversity (i.e., atomic‐property space), ii) molecular or macromolecular diversity (i.e., molecular‐ or macromolecular‐property spaces), and iii) chemical diversity (i.e., chemical‐diversity space). The first refers to the various electronic states an atom can occupy. The second encompasses the conformational and property spaces of a given (macro)molecule. The third pertains to the diversity in structure and properties exhibited by a library or a supramolecular assembly of different chemical compounds. The ground is thus laid for the content of the joint paper, which pertains to case ii, to be placed in its broader chemodiversity context. The second objective of this paper is to point to the concepts of chemodiversity and biodiversity as forming a continuum. Chemodiversity is indeed the material substratum of organisms. In other words, chemodiversity is the material condition for life to emerge and exist. Increasing our knowledge of chemodiversity is thus a condition for a better understanding of life as a process.     

乌头属植物化学成分、药理作用及其内生菌的研究进展

毛茛科乌头属植物广泛分布于北温带地区,具有重要的药用价值。乌头属植物主要的化学成分是生物碱,其中二萜生物碱是历来的研究热点。现代药理学研究证明,乌头属植物具有镇痛、抗炎、抗肿瘤及杀虫等作用。目前乌头属植物内生菌的研究也逐渐开展。本文对乌头属植物近年来报道的新的化学成分、药理研究和利用植物内生菌产生活性成分等进行了综述,可为乌头属植物的进一步开发利用提供参考。     

Variation in Soil Temperature,Moisture, and Plant Growth with the Addition of Downed Woody Material on Lakeshore Restoration Sites

Downed woody material (DWM) is an important ecosystem component that performs many critical functions including influencing soil temperature and moisture, which affects plant growth and survival. Residential development along lakeshores has increased dramatically in recent decades in the northern Great Lakes region. Such development often leads to reductions in terrestrial and aquatic woody material. Although lakeshore restoration projects have occurred in the past few years in the region, there has been little effort to evaluate success. In 2007, a collaborative lakeshore restoration research project began on two lakes in Vilas County, Wisconsin. We investigated the benefits of the addition of DWM as part of these restoration projects. We randomly assigned three coverage treatments (0, 25, and 50%) of DWM on 3 × 3–m experimental plots (n = 10 per treatment) and monitored soil temperature and volumetric soil water content at a depth of 10 cm. All plots were planted with two native shrub species and five native understory herbaceous species. Mean maximum soil temperature, mean difference in daily high and low soil temperature, and percent change in soil moisture content were significantly lower in the 25 and 50% DWM plots. Plant canopy volume growth for snowberry (Symphoricarpos albus) and Barren strawberry (Waldstenia fragaroides) was significantly greater in the 25 and 50% DWM plots. We conclude that the addition of DWM had a significant positive effect on regulating soil temperature extremes, soil moisture, and plant volume growth for two species of native plants used for restoration projects.     

Chemical Variation in a Dominant Tree Species: Population Divergence,Selection and Genetic Stability across Environments

Understanding among and within population genetic variation of ecologically important plant traits provides insight into the potential evolutionary processes affecting those traits. The strength and consistency of selection driving variability in traits would be affected by plasticity in differences among genotypes across environments (G×E). We investigated population divergence, selection and environmental plasticity of foliar plant secondary metabolites (PSMs) in a dominant tree species, Eucalyptus globulus. Using two common garden trials we examined variation in PSMs at multiple genetic scales; among 12 populations covering the full geographic range of the species and among up to 60 families within populations. Significant genetic variation in the expression of many PSMs resides both among and within populations of E. globulus with moderate (e.g., sideroxylonal A h²op = 0.24) to high (e.g., macrocarpal G h²op = 0.48) narrow sense heritabilities and high coefficients of additive genetic variation estimated for some compounds. A comparison of Qst and Fst estimates suggest that variability in some of these traits may be due to selection. Importantly, there was no genetic by environment interaction in the expression of any of the quantitative chemical traits despite often significant site effects. These results provide evidence that natural selection has contributed to population divergence in PSMs in E. globulus, and identifies the formylated phloroglucinol compounds (particularly sideroxylonal) and a dominant oil, 1,8-cineole, as candidates for traits whose genetic architecture has been shaped by divergent selection. Additionally, as the genetic differences in these PSMs that influence community phenotypes is stable across environments, the role of plant genotype in structuring communities is strengthened and these genotypic differences may be relatively stable under global environmental changes.     

Effect of Temperature, Photoperiod and Several Growth Substances on the Cold Hardiness of Chrysanthemum morifolium Rhizomes

The effect of 14 combinations of photoperiod, soil and air temperature, and growth substance applications on the cold hardiness of Chrysanthemum morifolium‘Astrid’ rhizomes was evaluated. Both triphenyl tetrazolium chloride and regrowth tests were used to determine the viability of the cold-stressed rhizome tissues. The rhizomes exhibited different degrees of cold hardiness under these environmental conditions. A combination of short photoperiod and low air and soil temperatures induced maximum cold hardiness. Low soil temperature accompanied by long photoperiods and warm aerial temperatures did not induce rhizome hardening, while some hardening in cool soils was evident under either short photoperiods or low aerial temperatures. Warm soils reduced rhizome hardening under the normally inductive short photoperiod-cool aerial conditions. Since the induction of rhizome hardening was dependent on the induction of the aerial organs, the involvement of translocatable hardiness promoters is indicated. Foliar applications of low levels of gibberllic acid (GA₃) or abscisic acid only slightly influenced rhizome hardiness.     

Landscape-scale Variation in Taxonomic Diversity in Four Groups of Aquatic Organisms: The Influence of Physical, Chemical, and Biological Properties

We evaluated several factors influencing the taxonomic richness of macrophytes, benthic invertebrates, snails, and fish in a series of northern Wisconsin lakes. We chose the study lakes to decouple the potential effects of ionic strength of lake water and stream connection, two factors that are usually highly correlated and therefore have been confounded in previous studies. In addition, our study lakes covered a wide range in a variety of characteristics, including residential development, abundance of exotic species, nutrient concentrations, predator abundance, and lake size. Species richness within each of the four taxonomic groups was significantly positively related to ionic strength (as measured by specific conductance); we also found secondary associations with other variables, depending on the specific group of organisms. The relationship between richness and lake area was dependent on the specific conductance of the lake and the vagility of the organisms; less vagile groups of organisms showed stronger and steeper species–area relationships in low-conductivity lakes. Further, after variance owing to specific conductance was removed, the presence of stream connections was positively related to species richness for fish, snails, and macrophytes as well as familial richness in benthic invertebrates. Our results indicate that lakes with relatively more groundwater input have lower extinction rates for all four groups of taxa and that lakes with stream inlets and outlets have enhanced immigration rates for fish, snails, benthic invertebrate families, and macrophytes. These findings link processes of immigration and extinction of four groups of organisms of varying vagility to landscape-level hydrologic characteristics related to the glacial history of the region.     

Effects of Wind-induced Spatial Variation in Water Temperature and Zooplankton Concentration on the Growth of Young-of-the-year Smallmouth Bass, Micropterus dolomieu

Synopsis Young-of-the-year (YOY) smallmouth bass, Micropterus dolomieu, spend their first summer in littoral areas near their nests. Evidence indicates that nests of smallmouth bass in Lake Opeongo, Ontario, Canada are more abundant in downwind locations than in upwind areas. We hypothesize that wind-induced lower water temperatures and food availability in upwind nesting areas lead to lower growth rates of YOY bass in upwind than in downwind nesting areas. We show that water temperatures were 0.6–1.3 °C higher in downwind than upwind littoral areas during the period from mid-June to mid-July, when the YOY bass were on or near their nests. Although quite variable, zooplankton concentrations were also higher at downwind sites. In addition, bioenergetic simulations based on time series of field-measured temperatures predicted higher growth rates of YOY bass in the downwind sites. Growth rates based on sequential sampling of bass fry from their nests did not, however, differ statistically between upwind and downwind sites, although fry consistently weighed more downwind than upwind in the basin with the longer fetch possibly due to earlier spring warming. Our hypothesis is thus only partially supported and we call for further research on effects of spatial gradients on smallmouth bass life history.     

Inhibitors from the rhizomes of Alpinia officinarum on production of nitric oxide in lipopolysaccharide-activated macrophages and the structural requirements of diarylheptanoids for the activity

The 80% aqueous acetone extract from the rhizomes of Alpinia officinarum, a Chinese medicinal herb, were found to inhibit nitric oxide (NO) production in lipopolysaccharide (LPS)-activated mouse peritoneal macrophages. Through bioassay-guided separation, two diarylheptanoids [7-(4'-hydroxy-3'-methoxyphenyl-1-phenylhept-4-en-3-one and 3,5-dihydroxy-1,7-diphenylheptane] and a flavonol constituent (galangin) substantially inhibited LPS-induced NO production with IC50 values of 33-62 microM. To clarify structure-activity relationships of diarylheptanoids, related diarylheptanoids from Curcuma zedoaria were examined. Results indicate that the double bond or enone moiety at the 1-7 positions is important for the activity.     

Enzymatic Detoxication,Conformational Selection,and the Role of Molten Globule Active Sites

The role of conformational ensembles in enzymatic reactions remains unclear. Discussion concerning “induced fit” versus “conformational selection” has, however, ignored detoxication enzymes, which exhibit catalytic promiscuity. These enzymes dominate drug metabolism and determine drug-drug interactions. The detoxication enzyme glutathione transferase A1–1 (GSTA1–1), exploits a molten globule-like active site to achieve remarkable catalytic promiscuity wherein the substrate-free conformational ensemble is broad with barrierless transitions between states. A quantitative index of catalytic promiscuity is used to compare engineered variants of GSTA1–1 and the catalytic promiscuity correlates strongly with characteristics of the thermodynamic partition function, for the substrate-free enzymes. Access to chemically disparate transition states is encoded by the substrate-free conformational ensemble. Pre-steady state catalytic data confirm an extension of the conformational selection model, wherein different substrates select different starting conformations. The kinetic liability of the conformational breadth is minimized by a smooth landscape. We propose that “local” molten globule behavior optimizes detoxication enzymes.     

Fungal Endophytes from Stalks of Tropical Maize and Grasses: Isolation,Identification, and Screening for Antagonism against Fusarium verticillioides in Maize Stalks

A bioassay to screen fungal isolates for endophytic growth and antagonism against Fusarium verticillioides in maize was developed. The method was based on the commonly used toothpick inoculation method followed by measurement of stalk necrosis, and was designed to assure a direct introduction of the endophyte into the plant. Thirty-four fungal endophytes isolated from surface sterilized grass and maize stalks from Costa Rica, and four soil isolates, were tested for antagonism and endophytic growth. Six isolates gave less necrosis (P < 0.05) than the control treated with F. verticillioides alone, but only one isolate, Trichoderma koningii S8, reduced the stalk necrosis when the test was repeated. Reisolations from the stalk showed that none of the isolates were able to completely eliminate F. verticillioides from the maize stalk. It is concluded that F. verticillioides is a very strong competitor that is highly adapted to live in association with maize, and that an effective antagonist against F. verticillioides still remains to be found. The screening assay developed in this study may prove to be a useful tool to study the in vivo interactions between plant pathogens and antagonistic endophytes.     

内蒙古赤峰市红菇科真菌物种资源及经济评价

对赤峰市赛罕乌拉、达里湖和黑里河等自然保护区的200余份红菇科真菌进行调查研究。鉴定出红菇科真菌38种,其中内蒙古新记录5种,红菇属27种,乳菇属11种。按经济价值进行划分,食用菌28种,药用菌16种,其中15种有不同程度的抑制肿瘤作用,毒菌7种。所有引证标本均保存于赤峰学院菌物标本室(CFSZ)。     

Diversity and productivity of plant communities across the Inland Northwest,USA

No definitive explanation for the form of the relationship between species diversity and ecosystem productivity exists nor is there agreement on the mechanisms linking diversity and productivity across scales. Here, we examine changes in the form of the diversity–productivity relationship within and across the plant communities at three observational scales: plots, alliances, and physiognomic vegetation types (PVTs). Vascular plant richness data are from 4,760 20 m² vegetation field plots. Productivity estimates in grams carbon per square meter are from annual net primary productivity (ANPP) models. Analyses with generalized linear models confirm scale dependence in the species diversity–productivity relationship. At the plot focus, the observed diversity–productivity relationship was weak. When plot data were aggregated to a focus of vegetation alliances, a hump-shaped relationship was observed. Species turnover among plots cannot explain the observed hump-shaped relationship at the alliance focus because we used mean plot richness across plots as our index of species richness for alliances and PVTs. The sorting of alliances along the productivity gradient appears to follow regional patterns of moisture availability, with alliances that occupy dry environments occurring within the increasing phase of the hump-shaped pattern, alliances that occupy mesic to hydric environments occurring near the top or in the decreasing phase of the curve, and alliances that occupy the wettest environments having the fewest species and the highest ANPP. This pattern is consistent with the intermediate productivity theory but appears to be inconsistent with the predictions of water–energy theory.     

Effects of Species Diversity on Establishment and Coexistence: A Phylloplane Fungal Community Model System

A model system was devised, evaluating the influence that species diversity (species richness) has on fungal establishment and coexistence. Seven members of the fungal phylloplane community of Vaccinium macrocarpon (American cranberry) were selected to assess how species diversity affected development and coexistence of another community member, Pestalotia vaccinii. Pestalotia was engaged in competitive interactions on 1% Malt Extract Agar (MEA) petri dishes with each of the seven individual saprotrophs (two-way interaction), in random combinations with three of the seven saprotrophs (four-way interaction), and in random combinations with five of the seven saprotrophs (six-way interaction). The saprotrophic fungi used in this study were Aspergillus sp., Alternaria alternata, Cladosporium cladosporoides, Curvularia lunata, Epicoccum purpuracens, Penicillium sp., and Pithomyces chartarum. We hypothesized that species diversity would have a significant impact on the establishment and coexistence of Pestalotia vaccinii in culture. In an effort to minimize density-dependent effects, the number of viable spores employed in the three types of interactions was kept constant. Target spore concentrations of 50 viable spores of P. vaccinii and 50 saprotroph spores were used, regardless of the number of species involved in the interaction. This proved to be a very important factor in the experiment. As our results show, species diversity had little or no effect on the establishment and coexistence of Pestalotia vaccinii; however, spore density played an extremely important role in the establishment and development of fungal propagules in our model.