数控剪切流微流体技术及其在细菌生物膜研究中的应用

<正>细菌生物膜是指微生物(细菌、真菌等)黏附、聚集形成的一个群体,该群体产生并分泌胞外聚合物(extracellular polymeric substance,EPS),形成一定的三维结构,含有营养物质、氧气等生长必需物质交换的通道,微生物细胞在EPS中增殖、生存[1]。生物膜结构可阻止抗生素或抗体等大分子有效杀伤微生物细胞,目前尚无有效的预防措施和治疗方法控制细菌生物膜所带来的危害。对细菌生物膜形成     

生物膜胞外聚合物的检测技术与功能的研究进展

生物膜胞外聚合物是黏附在生物膜周围,保证生物膜功能及完整性的生物合成聚合物。近几年,生物膜胞外聚合物的物理化学性质、生物功能及其检查技术备受关注。就生物膜胞外聚合物的组成、检测技术及功能几方面展开综述。     

蚯蚓调控土壤微生态缓解连作障碍的作用机制

连作障碍不仅严重影响作物产量, 而且会导致土壤生物多样性下降、有益微生物减少及病原菌增加等一系列微生态失衡问题。土壤微生态失衡反作用于植物, 导致植物发生更严重的病害、减产等。作为土壤生态系统工程师, 蚯蚓的取食、掘洞和爬行等活动对土壤微生态具有重要的调控作用, 既可以改善土壤环境, 又可以强化土壤生物群落功能, 有望为缓解作物的连作障碍问题提供一条新途径。本文总结了土壤微生态与土壤功能维持及蚯蚓调控土壤生物作用的研究进展, 在此基础上, 结合蚯蚓对化感物质降解作用的研究, 分析了蚯蚓通过调控土壤微生态缓解作物连作障碍的微生物作用机制的三条途径: 直接调控微生物群落、通过改变化感物质组成以及通过调控土壤动物区系调控微生物群落。蚯蚓对微生物群落的调控可改善失衡的土壤根际微生态, 有效缓解作物连作障碍。     

水中构筑物表面生物膜形成物理化学过程

水中构筑物表面生物膜的形成会加速构筑物的腐蚀,严重影响其使用效率和寿命;成熟后的生物膜老化脱落或受水力剪切作用进入主体水中,会造成水体二次污染,对动植物生长和人类生活造成重大影响。生物膜的形成是由单个细菌黏附到表面开始的,经过可逆黏附到不可逆黏附的过渡后,细菌分泌的胞外聚合物（extracellular polymeric substances, EPSs）会加速表面微菌落的形成,再通过细菌间的群体感应（quorum sensing,QS）使细菌启动表型和基因型变化,最终促使成熟生物膜的形成。本文综述了生物膜形成的不同阶段所涉及的物理化学过程（薄膜形成阶段、细菌黏附阶段、胞外聚合物膜阶段、群体感应调节生物膜阶段和生物膜成熟与表征）,分析总结了本领域各方向的最新研究进展,归纳并阐明了水中构筑物表面生物膜形成的机理和影响因素,为生物膜防控、清除和利用等相关研究领域提供了理论依据。     

土荆芥挥发油化感胁迫对土壤胞外酶活性和微生物多样性的影响

入侵植物释放的化感物质可改变土壤理化性状和微生物群落结构,通过与土壤微生物的互作抑制本土植物生长。为了进一步诠释土荆芥化感作用机制,采用温室培养瓶法,探讨了其挥发油对土壤胞外酶活性和微生物多样性的影响。结果表明:土荆芥挥发油不同程度降低了脲酶、酸性磷酸酶、蔗糖酶和硝酸还原酶的活性(P0.05);较高剂量的挥发油处理组显著促进了过氧化氢酶活性(P0.05)。处理初期挥发油对土壤胞外酶活性影响较大,但随着处理时间延长,其影响逐渐减弱;处理16 d后,较高剂量(20μL和50μL)的挥发油处理组细菌数量显著高于对照(P0.05)。挥发油对土壤放线菌数量的影响表现为低剂量促进,高剂量抑制的效应;PCR-DGGE分析表明,随着挥发油处理剂量增加和处理时间延长,土壤中细菌和真菌的Shannonwiener多样性指数和丰富度指数均增大。结论:土荆芥挥发油可改变土壤微生物群落结构和胞外酶活性,增加土壤微生物多样性。     

细菌生物膜的形成与调控机制

细菌通过自身合成的水合多聚物粘附在固体表面,以固着的方式生长从而形成生物膜,细菌生物膜的形成涉及到几个明显的阶段,包括起始的附着、细胞与细胞之间的吸附与增殖、生物膜的成熟、及最后细菌的脱离等四个阶段,生物膜的形成增加了细菌对抗生素的抗性以及帮助细菌逃逸寄主的免疫攻击等,从而引起临床上持续性的慢性感染等各种问题;生物膜结构非常复杂,除了细菌分泌的各种胞外多糖,胞外蛋白质外,最新的研究表明,DNA也是生物膜的一个重要成分.针对近年来的最新文献报道分别对生物膜的形成、结构以及调控机制等进行综述.     

乳杆菌在阴道微生态中生存状态的研究进展

乳杆菌是维持阴道微生态平衡的重要菌群,其通过粘附定植,免疫调节,分泌细菌素、类细菌素物质等多种途径抑制其它微生物的生长。同时乳杆菌自身的生存也容易受到如阴道微环境,性生活等多种因素的影响,导致阴道微生态失衡,诱发多种妇科疾病。     

细菌胞外囊泡的研究进展

胞外囊泡(extracellular vesicles,EVs)是自然界中细胞生命活动的产物，是一种包裹核酸、蛋白、脂类等分子的纳米级磷脂双分子层颗粒。近年来，越来越多的研究证实细菌可以分泌EVs作为抗生素和噬菌体的“诱饵”，从而发挥防御功能；此外，EVs还在传递毒力因子、细胞间通讯、介导基因水平转移、营养和电子传递、促进生物膜的形成中发挥重要作用。因此，EVs对生物个体和群体都具有十分重要的作用。本文综述了细菌EVs形成机制、提取及鉴定方法、影响EVs分泌的因素等，重点总结了EVs的生物学功能以及在环境科学领域的研究进展，为EVs的进一步研究提供参考。     

铜绿假单胞菌生物膜分散的研究近况

细菌分泌胞外多糖附着在物体表面组成一个结构性群体即生物膜,导致对抗生素的强抵抗性和感染的迁延不愈。反过来,已形成的生物膜也可以分散为游离菌,许多环境物质能够促进该分散过程,并且这些物质与抗生素合用对生物膜有强大的对抗作用。从生物膜到浮游菌是个复杂的过程,目前关于铜绿假单胞菌生物膜分散的特征、机制、诱导分子等已经引起了学者的强烈兴趣,随着问题的深入研究必然会给人类治疗生物膜所致的难治性感染带来更大的意义。     

食微线虫对植物生长及土壤养分循环的影响

近二十多年来, 土壤动物的生态功能受到广泛重视。越来越多的证据表明, 土壤动物和微生物间的相互作用对土壤生态系统过程和植物生长起着重要的调节作用。本文综述了食细菌线虫和食真菌线虫对土壤微生物、土壤氮矿化和植物生长的影响。大量研究发现, 食细菌线虫和食真菌线虫都有助于土壤氮素等养分矿化, 从而促进植物生长。这种作用主要是线虫通过取食活动加速微生物周转, 并通过代谢分泌和释放微生物所固持的养分而实现的。但这种作用会因不同的线虫、微生物和植物的种类以及土壤基质的C/N营养状况而异, 此外还受线虫的营养类群及其与其他土壤动物之间复杂关系的影响。今后应该加强以下几方面的研究: (1)深入研究线虫、微生物和植物之间相互作用的机制; (2) 增加控制实验系统的复杂性, 研究线虫不同功能群之间及其与其他土壤动物之间的关系; (3)加强长期实验和观察, 在较长的时间尺度上了解线虫的生态功能; (4)加强对不同生态系统的研究, 在更大的空间尺度上综合了解土壤线虫的生态功能; (5)在全球气候变化的背景下了解土壤线虫的响应, 并预测土壤线虫对全球变化的反馈。     

Alfalfa root nodule invasion efficiency is dependent on Sinorhizobium meliloti polysaccharides

The soil bacterium Sinorhizobium meliloti is capable of entering into a nitrogen-fixing symbiosis with Medicago sativa (alfalfa). Particular low-molecular-weight forms of certain polysaccharides produced by S. meliloti are crucial for establishing this symbiosis. Alfalfa nodule invasion by S. meliloti can be mediated by any one of three symbiotically important polysaccharides: succinoglycan, EPS II, or K antigen (also referred to as KPS). Using green fluorescent protein-labeled S. meliloti cells, we have shown that there are significant differences in the details and efficiencies of nodule invasion mediated by these polysaccharides. Succinoglycan is highly efficient in mediating both infection thread initiation and extension. However, EPS II is significantly less efficient than succinoglycan at mediating both invasion steps, and K antigen is significantly less efficient than succinoglycan at mediating infection thread extension. In the case of EPS II-mediated symbioses, the reduction in invasion efficiency results in stunted host plant growth relative to plants inoculated with succinoglycan or K-antigen-producing strains. Additionally, EPS II- and K-antigen-mediated infection threads are 8 to 10 times more likely to have aberrant morphologies than those mediated by succinoglycan. These data have important implications for understanding how S. meliloti polysaccharides are functioning in the plant-bacterium interaction, and models are discussed.     

Rhizobium meliloti exopolysaccharides: genetic analyses and symbiotic importance.

Genetic experiments have indicated that succinoglycan (EPS I), the acidic Calcofluor-binding exopolysaccharide, of the nitrogen-fixing bacterium Rhizobium meliloti strain Rm1021 is required for nodule invasion and possibly for later events in nodule development on alfalfa and other hosts. Fourteen exo loci on the second megaplasmid have been identified that are required for, or affect, the synthesis of EPS I. Mutations in certain of these loci completely abolish the production of EPS I and result in mutants that form empty Fix- nodules. We have identified two loci, exoR and exoS, that are involved in the regulation of EPS I synthesis in the free-living state. Certain exo mutations which completely abolish EPS I production are lethal in an exoR95 or exoS96 background. Histochemical analyses of the expression of exo genes during nodulation using exo::TnphoA fusions have indicated that the exo genes are expressed most strongly in the invasion zone. In addition, we have discovered that R. meliloti has a latent capacity to synthesize a second exopolysaccharide (EPS II) that can substitute for the role(s) of EPS I in nodulation of alfalfa but not of other hosts. Possible roles for exopolysaccharides in symbiosis are discussed.     

Characterization of outer membrane vesicles released by the psychrotolerant bacterium Pseudoalteromonas antarctica NF3

Pseudoalteromonas antarctica NF3 is an Antarctic psychrotolerant Gram-negative bacterium that accumulates large amounts of an extracellular polymeric substance (EPS) with high protein content. Transmission electron microscopy analysis after high-pressure freezing and freeze substitution (HPF-FS) shows that the EPS is composed of a capsular polymer and large numbers of outer membrane vesicles (OMVs). These vesicles are bilayered structures and predominantly spherical in shape, with an average diameter of 25-70 nm, which is similar to what has been observed in OMVs from other Gram-negative bacteria. Analyses of lipopolysaccharide (LPS), phospholipids and protein profiles of OMVs are consistent with the bacterial outer membrane origin of these vesicles. In an initial attempt to elucidate the functions of OMVs proteins, we conducted a proteomic analysis on 1D SDS-PAGE bands. Those proteins putatively identified match with outer membrane proteins and proteins related to nutrient processing and transport in Gram-negative bacteria. This approach suggests that OMVs present in the EPS from P. antarctica NF3, might function to deliver proteins to the external media, and therefore play an important role in the survival of the bacterium in the extreme Antarctic environment.     

丛枝菌根真菌在外来植物入侵演替中的作用与机制

外来植物入侵不仅是环境、经济和社会问题,也是一个生理学和生态学问题,尤其是入侵植物与本地植物、入侵植物和本地土壤生物之间的相互作用决定外来植物入侵程度。丛枝菌根真菌（AMF）作为土壤中一类极为重要的功能生物,在外来植物入侵演替过程中发挥多种不同作用。文章系统总结了AMF对入侵植物个体和群体的影响,入侵植物与本地植物竞争中AMF发挥的促进和抑制作用;探讨了AMF与入侵植物的相互作用关系,以及环境因子对AMF一入侵植物关系的影响：对AMF在外来植物入侵演替中的作用机制进行了讨论。旨在为探索控制生物入侵的新途径、为我国开展外来植物入侵研究与防控实践提供新思路。     

The ExpR/Sin quorum-sensing system controls succinoglycan production in Sinorhizobium meliloti

Sinorhizobium meliloti is a gram-negative soil bacterium capable of forming a symbiotic nitrogen-fixing relationship with its plant host, Medicago sativa. Various bacterially produced factors are essential for successful nodulation. For example, at least one of two exopolysaccharides produced by S. meliloti (succinoglycan or EPS II) is required for nodule invasion. Both of these polymers are produced in high- and low-molecular-weight (HMW and LMW, respectively) fractions; however, only the LMW forms of either succinoglycan or EPS II are active in nodule invasion. The production of LMW succinoglycan can be generated by direct synthesis or through the depolymerization of HMW products by the action of two specific endoglycanases, ExsH and ExoK. Here, we show that the ExpR/Sin quorum-sensing system in S. meliloti is involved in the regulation of genes responsible for succinoglycan biosynthesis as well as in the production of LMW succinoglycan. Therefore, quorum sensing, which has been shown to regulate the production of EPS II, also plays an important role in succinoglycan biosynthesis.     

The evolution of root hairs and rhizoids

Background

Almost all land plants develop tip-growing filamentous cells at the interface between the plant and substrate (the soil). Root hairs form on the surface of roots of sporophytes (the multicellular diploid phase of the life cycle) in vascular plants. Rhizoids develop on the free-living gametophytes of vascular and non-vascular plants and on both gametophytes and sporophytes of the extinct rhyniophytes. Extant lycophytes (clubmosses and quillworts) and monilophytes (ferns and horsetails) develop both free-living gametophytes and free-living sporophytes. These gametophytes and sporophytes grow in close contact with the soil and develop rhizoids and root hairs, respectively.

Scope

Here we review the development and function of rhizoids and root hairs in extant groups of land plants. Root hairs are important for the uptake of nutrients with limited mobility in the soil such as phosphate. Rhizoids have a variety of functions including water transport and adhesion to surfaces in some mosses and liverworts.

Conclusions

A similar gene regulatory network controls the development of rhizoids in moss gametophytes and root hairs on the roots of vascular plant sporophytes. It is likely that this gene regulatory network first operated in the gametophyte of the earliest land plants. We propose that later it functioned in sporophytes as the diploid phase evolved a free-living habit and developed an interface with the soil. This transference of gene function from gametophyte to sporophyte could provide a mechanism that, at least in part, explains the increase in morphological diversity of sporophytes that occurred during the radiation of land plants in the Devonian Period.     

DNA Builds and Strengthens the Extracellular Matrix in Myxococcus xanthus Biofilms by Interacting with Exopolysaccharides

One intriguing discovery in modern microbiology is the extensive presence of extracellular DNA (eDNA) within biofilms of various bacterial species. Although several biological functions have been suggested for eDNA, including involvement in biofilm formation, the detailed mechanism of eDNA integration into biofilm architecture is still poorly understood. In the biofilms formed by Myxococcus xanthus, a Gram-negative soil bacterium with complex morphogenesis and social behaviors, DNA was found within both extracted and native extracellular matrices (ECM). Further examination revealed that these eDNA molecules formed well organized structures that were similar in appearance to the organization of exopolysaccharides (EPS) in ECM. Biochemical and image analyses confirmed that eDNA bound to and colocalized with EPS within the ECM of starvation biofilms and fruiting bodies. In addition, ECM containing eDNA exhibited greater physical strength and biological stress resistance compared to DNase I treated ECM. Taken together, these findings demonstrate that DNA interacts with EPS and strengthens biofilm structures in M. xanthus.     

光强和氮源对念珠藻胞外多糖分泌的影响

胞外多糖（EPS）是结皮蓝藻形成生物结皮的胶结剂,为了理解常球状存在的丝状蓝藻Nostoc胶结沙粒的机理,探讨了光强40、80 E/（m2s）和氮源（气态氮,硝态氮）对结皮优势种Nostoc sp.分泌EPS（包括荚膜多糖CPS和释放多糖RPS）的影响规律及其内在机理。结果发现:Nostoc sp.在气态氮和硝态氮下都有相似的快速生长,但其分泌的RPS、CPS及EPS量,在硝态氮下均随光强的增加而增加,在气态氮下却与光强没有关系。相关代谢研究发现,在硝态氮下细胞内有更高含量的可溶性糖和蔗糖。进一步的相关分析发现,在两种氮源下,蔗糖量与RPS量或CPS量间的显著正相关都只发生在80 E/（m2s）下,在气态氮中,两光强下的胞内总糖量都与CPS量显著负相关。以上结果说明,Nostoc sp.在氮源利用和光强适应方面都有明显优势,它即使在快速生长的对数期,也可同时分泌相当量的EPS,这使其在球状藻殖段形成之前胶结沙粒成为可能。由此可推知,Nostoc sp.在贫瘠沙土表面的最初生长过程中,其胞外的EPS均来自胞内的固碳产物,在高光强下,蔗糖很可能是其EPS合成的原料。       

Linking Belowground Carbon Allocation to Anaerobic CH4 and CO2 Production in a Forested Peatland,New York State

Heterotrophic soil microorganisms rely on carbon (C) allocated belowground in plant production, but belowground C allocation (BCA) by plants is a poorly quantified part of ecosystem C cycling, especially, in peat soil. We applied a C balance approach to quantify BCA in a mixed conifer-red maple (Acer rubrum) forest on deep peat soil. Direct measurements of CH₄ and CO₂ fluxes across the soil surface (soil respiration), production of fine and small plant roots, and aboveground litterfall were used to estimate respiration by roots, by mycorrhizae and by free-living soil microorganisms. Measurements occurred in two consecutive years. Soil respiration rates averaged 1.2 bm μmol m^{? 2} s^{? 1} for CO₂ and 0.58 nmol m^{? 2} s^{? 1} for CH₄ (371 to 403 g C m^{? 2} year^{? 1}). Carbon in aboveground litter (144 g C m^{? 2} year^{? 1}) was 84% greater than C in root production (78 g C m^{? 2} year^{? 1}). Complementary in vitro assays located high rates of anaerobic microbial activity, including methanogenesis, in a dense layer of roots overlying the peat soil and in large-sized fragments within the peat matrix. Large-sized fragments were decomposing roots and aboveground leaf and twig litter, indicating that relatively fresh plant production supported most of the anaerobic microbial activity. Respiration by free-living soil microorganisms in deep peat accounted for, at most, 29 to 38 g C m^{? 2} year^{? 1}. These data emphasize the close coupling between plant production, ecosystem-level C cycling and soil microbial ecology, which BCA can help reveal.     

土壤质量与土壤质量指标及其评价

土壤作为一种重要的自然资源可以为人类生产食物和纤维,并维持地球生态系统.土壤也是植物生长的媒介、水、热和化合物的源、水分的过滤器和废物分解的生物介质.土壤与水、气和植物互作并抑制环境的波动.土壤可以调节很多控制水气质量和促进植物生长的生态过程.土壤质量概念的引入使我们更全面地理解土壤,也有助于合理地使用和分配劳力、能源、财政和其它投入.土壤质量也提供了一个通用的概念使得专业人员、生产者和公众明白土壤的重要性.此外,它也是一个评价管理措施和土地利用变化对土壤影响的评价工具.土壤质量由土壤的物理、化学和生物性质组成,MDS已被科学家们提出用于土壤质量评价.国际上比较常用的评价方法主要有多变量指标克立格法、土壤质量动力学方法、土壤质量综合评分法和土壤相对质量法.人类对土地不和谐地利用和管理可以导致全球生物地球化学循环发生改变和加快土壤性质变化的速度,当前世界各地土壤退化相当严重,已日益威胁到人类赖以生存的土地资源.在探讨相关概念的基础上综述了近年来土地利用变化对土壤理化质量和生物质量的影响进展,以引起国内外学者对土地利用变化对土壤质量影响研究的重视,从而为探讨土地利用对土壤质量影响的机理和规律以及退化土地的恢复和区域土地资源管理以及土地的持续利提供理论依据.土壤质量未来的研究应该集中在土壤质量指标与评价方法;土壤质量变化的发生条件、过程、影响因素及其作用机理与时空规律性;尺度问题的研究;土壤质量保持与提高的途径及其关键技术研究.