Compost amendments enhance peat suppressiveness to Pythium ultimum,Rhizoctonia solani and Sclerotinia minor

Peat is the most common organic material used for the preparation of potting mix because of its homogeneous and favorable agronomic characteristics. However, this organic material is poorly suppressive against soilborne pathogens and fungicides are routinely used to manage damping-off diseases. In the present study, we investigated the suppressive capability of five compost – peat mixtures towards the plant pathogens Pythium ultimum, Rhizoctonia solani and Sclerotinia minor – Lepidium sativum pathosystems. For all organic media, 18 parameters were measured including enzymatic activities (glucanase, N-acetyl-glucosaminidase, chitobiosidase and hydrolysis of fluorescein diacetate), microbiological (BIOLOG® EcoPlates?, culturable bacteria and fungi), and chemical features (pH, EC, total, extractable and humic carbon, total and organic N, NH₄–N, total protein and water content). In addition, ¹³C-CPMAS-NMR spectroscopy was used to characterize the organic materials. Peat amended with composts reduced disease damping-off caused by P. ultimum, R. solani and S. minor in 60% of the mixtures and compost derived from animal manure showed the largest and most consistent disease suppression. Sterilization decreased or eliminated suppressiveness of 42.8% of the mixtures. The most useful parameters to predict disease suppression were different for each pathogen: extractable carbon, O-aryl C and C/N ratio for P. ultimum, alkyl/O-alkyl ratio, N-acetyl-glucosaminidase and chitobiosidase enzymatic activities for R. solani and EC for S. minor. Our results demonstrate that the addition of composts to peat could be useful for the control of soilborne pathogens.     

山东省玉米纹枯菌融合群类型及遗传多样性

从山东省14个县市区采集的玉米纹枯病标本上分离获得103个玉米纹枯菌菌株。核荧光染色确定菌丝细胞核的数目,以及利用配对培养法确定不同菌株细胞是否融合。结果表明这些菌株分别属于多核丝核菌的AG-1-IA、AG-1-IB、AG-1-IC、AG-3、AG-4-HG-I、AG-5和WAG-Z融合群和双核丝核菌的AG-Ba融合群,其中AG-1-IA类型菌株数量占菌株总数的60.19%,为优势融合群。通过inter-simple sequence repeats（ISSR）标记技术进行菌株的遗传多样性分析,获得45个ISSR分子标记,其中91.1%的片段具有多态性,表明种群间存在丰富的遗传多样性。UPGMA聚类分析将103个菌株分成6个遗传聚类群,遗传聚类群的菌株组成说明遗传群组的划分与菌株的地理来源和菌株融合群类型均存在一定的相关性。     

Genetic diversity of Rhizoctonia solani associated with potato tubers in France

The soilborne fungus Rhizoctonia solani is a pathogen of many plants and causes severe damage in crops around the world. Strains of R. solani from the anastomosis group (AG) 3 attack potatoes, leading to great yield losses and to the downgrading of production. The study of the genetic diversity of the strains of R. solani in France allows the structure of the populations to be determined and adapted control strategies against this pathogen to be established. The diversity of 73 French strains isolated from tubers grown in the main potato seed production areas and 31 strains isolated in nine other countries was assessed by phylogenetic analyses of (i) the internal transcribed spacer sequences (ITS1 and ITS2) of ribosomal RNA (rRNA), (ii) a part of the gene tef-1α and (iii) the total DNA fingerprints of each strain established by amplified fragment length polymorphism (AFLP). The determination of the AGs of R. solani based on the sequencing of the ITS region showed three different AGs among our collection (60 AG 3 PT, 8 AG 2-1 and 5 AG 5). Grouping of the strains belonging to the same AG was confirmed by sequencing of the gene tef-1α used for the first time to study the genetic diversity of R. solani. About 42% of ITS sequences and 72% of tef-1α sequences contained polymorphic sites, suggesting that the cells of R. solani strains contain several copies of ITS and the tef-1α gene within the same nucleus or between different nuclei. Phylogenetic trees showed a greater genetic diversity within AGs in tef-1α sequences than in ITS sequences. The AFLP analyses showed an even greater diversity among the strains demonstrating that the French strains of R. solani isolated from potatoes were not a clonal population. Moreover there was no relationship between the geographical origins of the strains or the variety from which they were isolated and their genetic diversity.     

Rhizoctonia solani and orchid seed

Summary

One hundred and sixty-two agarics are recorded for Hirta and two from Dùn, two islands situated off the West coast of Scotland in the St. Kilda complex. The agarics are described in relation to the ecological noda proposed by McVean for the higher plant communities of the islands. Omphalina ericetorum and Nolanea staurospora were by far the commonest species: eighttaxa which are not in the New British Check List are recorded from Hirta. An appendix dealing with the taxonomy and nomenclature of the more critical species in the list is given.     

Methylation and aging in Rhizoctonia solani

Our earlier studies had shown that as fungi age, many of their vital functions decrease; in Rhizoctonia solani, protein synthesis is one of the functions so affected. We now find that the ability to methylate tRNA, a vital component of the protein synthesizing system, also decreases with age. This methylation of Escherichia coli tRNA by R. solani methylase preparations increased with the concentration of enzyme and with time of incubation; in both cases the rate of increase was considerably higher for preparations from young cells than for those from old cells. The methylation reaction also increased with the concentration of substrate tRNA, with temperature, at least to 45° C, and with pH to 9.0. Methylase preparations from R. solani methylated both exogenous E. coli tRNA and yeast tRNA, but were only weakly active on isolated R. solani tRNA. However, acid-precipitated methylases from R. solani were very effective in methylating the homologous exogenous tRNA. Regardless of the source of the tRNA used as substrate, the methylases from older cells were always less active than those from young cells from the same mycelium. No methylase inhibitor was detected in the fungus.     

Genetic diversity of Rhizoctonia solani AG-3 from potato and tobacco in North Carolina

Anastomosis group 3 (AG-3) of Rhizoctonia solani (teleomorph = Thanatephorus cucumeris) is frequently associated with diseases of potato (AG-3 PT) and tobacco (AG-3 TB). Although isolates of R. solani AG-3 from these two Solanaceous hosts are somatically related based on anastomosis reaction and taxonomically related based on fatty acid, isozyme and DNA characters, considerable differences are evident in their biology, ecology, and epidemiology. However, genetic diversity among field populations of R. solani AG-3 PT and TB has not been documented. In this study, the genetic diversity of field populations of R. solani AG-3 PT and AG-3 TB in North Carolina was examined using somatic compatibility and amplified fragment length polymorphism (AFLP) criteria. A sample of 32 isolates from potato and 36 isolates from tobacco were paired in all possible combinations on PDA plus activated charcoal and examined for their resulting somatic interactions. Twenty-eight and eight distinct somatic compatibility groups (SCG) were identified in the AG-3 PT and AG-3 TB samples, respectively. AFLP analyses indicated that each of the 32 AG-3 PT isolates had a distinct AFLP phenotype, whereas 28 AFLP phenotypes were found among the 36 isolates of AG-3 TB. None of the AG-3 PT isolates were somatically compatible or shared a common AFLP phenotype with any AG-3 TB isolate. Clones (i.e., cases where two or more isolates were somatically compatible and shared the same AFLP phenotype) were identified only in the AG-3 TB population. Four clones from tobacco represented 22% of the total population. All eight SCG from tobacco were associated with more than one AFLP phenotype. Compatible somatic interactions between AG-3 PT isolates occurred only between certain isolates from the same field (two isolates in each of four different fields), and when this occurred AFLP phenotypes were similar but not identical.     

土壤微生物生态过程与微生物功能基因多样性

土壤微生物在陆地生态系统中具有重要的生态功能,包括参与地球化学物质循环、污染物降解、环境剧烈变化的缓冲等.土壤微生物的生态功能与土壤功能联系密切,微生物群落结构与组成变化会直接影响土壤功能的发挥.土壤微生物通过具有生物活性的酶参与一系列的代谢活动,编码酶的功能基因成为微生物功能标记物.近10年中,以功能基因多样性为核心的分子生态学研究迅速发展,为从功能基因角度了解土壤微生物的生态功能提供了一个新的切入点.本文综述了与土壤微生物生态功能相关的功能基因多样性研究进展,并对该领域的发展前景提出展望.     

Acetone Inhibition of Rhizoctonia solani Growth

Acetone (5% v/v) inhibited growth of four isolates of Rhizoctonia solani which differ in their pathogenicity on squash seedlings. Acetone (5% v/v) showed best inhibition on the most aggressive isolate 4 followed by the less aggressive ones (1, 2 and 3, respectively); IAA had no effect on the growth of all R. solani isolates compared to the controls.     

Pathogenicity of Rhizoctonia solani and Phytophthora nicotianae to Brassicaceae cover crops

Soil-borne diseases can reduce nursery crop performance and increase costs to nursery producers. In particular, soil-borne diseases caused by Phytophthora nicotianae and Rhizoctonia solani are the most economically important problems of Southeastern United States nursery producers. Methyl bromide was widely used as a standard treatment for management of soil-borne diseases until the implementation of the Montreal protocol. Since then, many chemical and non-chemical soil-borne disease management methods have been tested, but are not yet providing effective and consistent results like methyl bromide. Cover crops that belonged to the Brassicaceae family can be incorporated into the soil to control soil-borne diseases and this process is widely known as biofumigation. But, the use of Brassicaceae cover crops has not been widely explored as a method of controlling soil-borne diseases in woody ornamental nursery production. The objective of this study was to evaluate Brassicaceae cover crops for susceptibility to most destructive soil-borne pathogens of nursery production, P. nicotianae and R. solani, to identify effective cover crops that can be used in the biofumigation process in woody ornamental nursery production. Brassica species intended to be used in the fresh market or biofimigation were screened for their susceptibility to R. solani and P. nicotiane in an environmentally controlled greenhouse. At the end of experiments, plant growth data (plant height, width and fresh weight), total damping-off were recorded, and cover crop root systems were assessed for disease severity using a scale of 0–100% roots affected. Among the tested 15 cover crops in the Brassicaceae family, oilseed radish (Raphanus sativus L.), yellow mustard “White Gold” (Sinapis alba L.), turnip “Purple Top Forage” (Brassica rapa L.), arugula “Astro” (Eruca vesicaria (L.) Cav. ssp. sativa (Mill.) Thell.), mighty mustard^® “Pacific Gold” (B. juncea (L.) Czern.), brown mustard “Kodiak” (B. juncea (L.) Czern.), rape “Dwarf Essex” (B. napus L.) and mustard green “Amara” (B. carinata A. Braun) showed numerically lower root rot disease severity and total damping-off in topsoil which had pre-existing populations of R. solani or P. nicotinanae compared to other cover crops. Since these above mentioned Brassicaceae crops shows the ability to withstand the higher disease pressure from R. solani and P. nicotinanae under the greenhouse conditions they can be used in the further experiments to evaluate their ability in biofumigation. Further research is necessary to evaluate the performance of these cover crops under the field conditions.     

Phenylacetic acid meta hydroxylase from Rhizoctonia solani

Mono-oxygenase-like activity occurs in Rhizoctonia solani during the metabolism of phenyl-acetic acid. The partially purified enzyme catalysed only the hydroxylation of phenylacetic acid at its meta position and required NADH and tetrahydrofolate as co-factors. Benzoic, phenylpropionic, trans-cinnamic, and phenoxyacetic acids were not suitable substrates for the enzyme.