Instream release of dissolved organic matter from coarse and fine particulate organic matter of different origins

Dissolved organic matter (DOM), produced through leaching from particulate organic matter (POM), is an essential component of the carbon cycle in streams. The present study investigated the instream DOM release from POM, varying in size and chemical quality. We produced large and medium sized fine particulate organic matter (L-FPOM, 250–500 μm; M-FPOM, 100–250 μm) of defined quality by feeding five types of coarse particulate organic matter (CPOM) to shredding amphipods (Gammarus spp.). Microscopic observations showed that L-FPOM and M-FPOM mainly consisted of the fecal pellets of amphipods, and incompletely eaten plant fragments, respectively. DOM release experiments were conducted by exposing CPOM and M- and L-FPOM fractions in natural stream water over a two week period. For CPOM, the release of dissolved organic carbon (DOC) by leaching was highest during the first 6 h (3.64–23.9 mg C g C^?1 h^?1) and decreased rapidly afterwards. For M- and L-FPOM, the DOC release remained low during the entire study period (range: 0.008–0.15 mg C g C^?1 h^?1). Two-way ANOVA revealed that the DOC release rate significantly differed with POM source and size fraction, both at day 1 and after a week of exposure. Multiple regression analyses revealed a significant correlation of elemental contents and lignin content to DOC release rate after a week of exposure. Overall, the results indicated that DOC release rate of FPOM, on a carbon basis, is comparable to that of CPOM after leaching, while size and source of POM significantly affect DOC release rate.     

Algal assemblages and their relationship with water quality in tropical Mexican streams with different land uses

This study analyzes the relationship between physical and chemical factors and the algal communities in tropical streams in micro-watersheds where >70% of their area has different land uses, specifically, cloud mountain forest, coffee plantations, and livestock pastures. Physical, chemical, and biological variables were measured monthly in each stream over a 1-year period. The concentrations of nitrates + nitrites, total suspended solids (TSS), and silica in the streams were found to differ during the dry and rainy seasons. Coffee-plantation streams showed the highest levels of suspended solids, nitrates + nitrites, and sulfates. Based on chlorophyll a concentration, the forest and coffee-plantation streams are oligo-mesotrophic, while pasture streams are meso-eutrophic. Forest streams displayed the lowest levels of richness and algal diversity, followed by coffee-plantation streams, whereas pasture streams were the most diverse. Chlorophyll a concentration and species richness depended on land use and season. Forest coverage was positively correlated with acidophilous and oligo-eutraphentic diatom species. Coffee coverage displayed a significant positive correlation with motile species and a significant negative correlation with pollution-sensitive diatom taxa. The results show that diatom assemblages responded to micro-watershed conditions and can be used to monitor the effects of land use on streams in tropical regions.     

Allochthonous coarse particulate organic material in forest and pasture reaches of two south-eastern Australian streams

1. Terrestrial plant litter entering two forest and two pasture sites on upland streams in south-eastern Australia was measured over a 2-year period using traps suspended above the streams. Laterally transported terrestrial plant litter was also determined in one stream, but found to be only 10% of the total. 2. Litter accession to traps suspended above the stream was significantly lower at both forested sites than was litter fall in the adjacent riparian vegetation. 3. Litter input was high (600–700g DW m^?2yr^?1) and seasonal, with 30–50% of the annual total entering the stream during December—February (summer). However, seasonality was not as great as that recorded in Northern Hemisphere deciduous forest streams. 4. Leaves comprised the largest litter component, but represented a relatively smaller proportion of the litter than is usually the case in Northern Hemisphere deciduous forest streams; in contrast bark was a relatively large proportion of the litter. 5. At the sites flowing through pasture, litter accession was about two orders of magnitude lower than at the forested sites.     

Retention of particulate organic matter in a tropical headstream

Retention of particulate organic matter was investigated over a range of water discharges in pool and riffle zones of a tropical stream (Itaúna Stream, São Paulo, Brazil). A closed-system leaf release and capture method was used to quantify leaf retention in a 50-m reach of the stream. Instantaneous retention rates (k) were calculated by a negative exponential model and specific retention rates (k _e) computed for each 1m interval. The mean k was 0.0161±0.0101 (S.E.) and ranged from 0.005 to 0.036 during the study period. This suggests a low retention of particulate matter. The evidence provided by this study shows that there was a relationship between retention and discharge. At low discharges, greater percentages of leaves were retained in a 3-h period while high discharges resulted in low retention percentages within the studied reach. In the Itaúna Stream, no significant difference (p<0.05) was found between the k _e values of pool and riffle zones.     

The atmospheric chemistry of trace gases and particulate matter emitted by different land uses in Borneo

We report measurements of atmospheric composition over a tropical rainforest and over a nearby oil palm plantation in Sabah, Borneo. The primary vegetation in each of the two landscapes emits very different amounts and kinds of volatile organic compounds (VOCs), resulting in distinctive VOC fingerprints in the atmospheric boundary layer for both landscapes. VOCs over the Borneo rainforest are dominated by isoprene and its oxidation products, with a significant additional contribution from monoterpenes. Rather than consuming the main atmospheric oxidant, OH, these high concentrations of VOCs appear to maintain OH, as has been observed previously over Amazonia. The boundary-layer characteristics and mixing ratios of VOCs observed over the Borneo rainforest are different to those measured previously over Amazonia. Compared with the Bornean rainforest, air over the oil palm plantation contains much more isoprene, monoterpenes are relatively less important, and the flower scent, estragole, is prominent. Concentrations of nitrogen oxides are greater above the agro-industrial oil palm landscape than over the rainforest, and this leads to changes in some secondary pollutant mixing ratios (but not, currently, differences in ozone). Secondary organic aerosol over both landscapes shows a significant contribution from isoprene. Primary biological aerosol dominates the super-micrometre aerosol over the rainforest and is likely to be sensitive to land-use change, since the fungal source of the bioaerosol is closely linked to above-ground biodiversity.     

Transport of coarse particulate organic matter in an Idaho river,USA

I investigated organic matter transport in the Henry's Fork of the Snake River, Idaho, USA, from August 1987 to November 1988. Mean discharge during the study was 15 m³ s^–1. Screens were used to sample very coarse (> 6 mm) transported aquatic macrophyte material (VCTMM). Drift nets were used to sample coarse (1–6 mm) and fine (0.25–1 mm) transported particulate organic matter (CTOM and FTOM). Mean monthly concentration of VCTMM was 0.064 mg AFDWl^–1 and was significantly higher than CTOM (0.024 mg AFDW l^–1) and FTOM (0.036 mg AFDW l^–1). VCTMM concentration was highest in December (0.163 mg AFDW l^–1) and lowest in May (0.018 mg AFDW l^–1). The sample position along a transect across the channel had a significant effect on the amount of transported organic matter collected in many months. The concentration of debris from individual species tracked the standing stock of that species during the growing season. In Fall, a dramatic increase in VCTMM corresponded to a decrease in macrophyte standing stock. FTOM and CTOM concentrations were highest in January (CTOM: 0.048; FTOM: 0.111 mg AFDW l^–1), lowest in November 1988 (<0.006 mg AFDW l^–1), were not correlated with discharge, and were inversely correlated with the standing stocks of macrophytes upstream, probably because macrophyte beds influenced the retentiveness of the channel. Standing stock of aquatic macrophytes was highest in September–October (5.2 kg wet weight m ^–2) and lowest in February (1.7 kg wet weight m^–2). Annual movement of particulate organic matter past the sampling point was about 45 000 kg AFDW, of which 21 000 kg was VCTMM, 8 000 kg was CPOM, and 16 000 kg was FPOM.     

Beaver alter stable carbon isotope ratios of benthic particulate organic matter

Beaver are well known to influence the geomorphology and geochemistry of boreal waters, in addition to being prominent vectors in the selective import of deciduous coarse woody debris (CWD). Because the stable carbon isotope ratios of deciduous trees are lower than those of coniferous trees, the possibility exists that the ¹³C values of particulate organic matter near beaver lodges may differ from those characteristic for littoral regions without beaver activity. In agreement with this supposition, ¹³C was found to significantly increase in progressively smaller size fractions of CWD collected from near lodges, probably due to the more rapid breakdown, decomposition and disappearance of deciduous material.     

Transport and particle size distribution of suspended and benthic organic matter in three headwater streams

The breakdown and decomposition of two species of deciduous leaf litter, Fagus sylvatica L. and Salix viminalis L. and two species of aquatic macrophyte Isoetes lacustris L. and Potamogeton perfoliatus L. were examined in an oligotrophic lake. In all cases plant litter in coarse mesh litter bags lost significantly more material than the fine mesh after 1 years submergence in the lake. This however was considered to be the result of physical environmental factors and microbial activity rather than animal processing. The litter was ranked in order of fastest to slowest rates of decay as follows — Isoetes, Potamogeton, Salix and Fagus. Decomposition processes proceeded at a relatively slow rate as a result of low temperatures and low phosphate and mineral ion concentration. The results suggested that there was an accumulation of organic material in the lake.     

Seasonality of reproduction by liverbearing fishes in tropical rainforest streams

Reproductive ecology, population structure, and diets of three common livebearing poeciliid fishes (Alfaro cultratus, Phallichthys amates, Poecilia gilli) from rainforest streams in Costa Rica were investigated over ten continuous months. The region experiences little annual temperature variation, and although monthly rainfall is continuous each year, two brief dry seasons typically occur. Monthly changes in indices of ovarian condition, percentages of females with developing embryos, and population size structure revealed that reproductive output by females of all three species varied seasonally. Based on testicular condition, males were reproductively active year-round, however the mean gonadal index for males of two algivorous species showed low levels of seasonal cycling that largely coincided with female variation in reproductive effort. All three species had seasonal differences in the female size-brood size relationship, whereby larger females tended to carry more embryos during the wet season. Several important adult and neonate food resources are more available in the flooded forest during the wet season, which is also the period when conspecifics and predators are at their lowest per-area densities. Three hypotheses are discussed: (1) brood size in relation to conspecific density-mating frequency, (2) reproductive allocation in response to variation in adult food resources, and (3) selection for greater reproductive effort during conditions optimal for juvenile growth and survival. Data for Alfaro were consistent with the latter two hypotheses. In Phallichthys and Poecilia, diets were poorer during wet seasons, indicating that reproductive effort does not coincide with availability of adult food resources, and that selection probably favors greater reproductive effort during periods optimal for juvenile growth and survival.     

Predictability of streamflow and particulate organic matter concentration as indicators of stability in prairie streams

Predictability of stream discharge and particulate organic matter (POM) in the water column was estimated, using Colwell's indices of constancy and contingency, for 6 Texas prairie streams (1 each of 2nd, 3rd, and 4th order with intermittent or perennial discharge). Stream discharge in these 6 prairie streams varied between 0 and 36000 1 s^–1, depending on the stream and season. Predictability (P) of discharge in these streams ranged from 0.45 to 0.62, within the range of values expected for North American streams. Predictability of stream discharge was not significantly different between streams. Particulate organic matter concentrations in these prairie streams are relatively low, ranging from 0.25 to 4.00 mg AFDM 1^–1. Predictability of POM concentration in these streams was high, ranging from 0.75 to 0.85, and was largely the result of constancy of POM concentrations. Within the different POM size classes, Fine POM (FPOM) had the highest predictability (P = 0.89–0.96). In spite of relatively unpredictable stream discharge, POM remained fairly constant providing a measure of habitat predictability and stability.     

The legacy of forest logging on organic matter inputs and storage in tropical streams

Riparian forests play an important role in stream ecosystems, as they support biodiversity, reduce water erosion, and provide litter that fuels aquatic biota. However, they are affected by great array of anthropogenic threats (e.g., fire, logging, and organic pollution), which alter species composition and their physical structure. Although forest recovery after disturbance such as logging can take decades, the legacy of forest clear-cut logging on key processes in tropical riparian ecosystems is mostly unknown. Here, we investigated how litter inputs (leaves, twigs, and reproductive parts) and storage, key processes for carbon and nutrient recycling and for forest and stream biota, are influenced by riparian vegetation undergoing succession (after 28 years from logging) through the comparison of reference and logged forest sites in the Cerrado biome. Litterfall was overall similar between forest types, but litterfall of twigs was twofold higher at logged than reference sites. Similarly, litter inputs from the bank to the stream (i.e., lateral inputs) and streambed storage were 50–60% higher at logged than reference sites. The higher litterfall observed in logged forests could be related to higher proportion of tree species that are characteristic of primary and secondary successional stages, including fast-growing and liana species, which often are more productive and common in anthropogenic areas. Our results showed that the legacy impact of clear-cut logging, even if residual woody vegetation is maintained in riparian buffers, can shift the type, quantity, and seasonality of litter subsidies to tropical streams. This knowledge should be considered within the context of management and conservation of communities and ecosystem processes in the forest-stream interfaces.     

Pyrolysis-molecular beam mass spectrometry to characterize soil organic matter composition in chemically isolated fractions from differing land uses

Today’s questions concerning the role of soil organic matter (SOM) in soil fertility, ecosystem functioning and global change can only be addressed through knowledge of the controls on SOM stabilization and their interactions. Pyrolysis molecular beam mass spectrometry (py-MBMS) provides a powerful and rapid means of assessing the biochemical composition of SOM. However, characterization of SOM composition alone is insufficient to predict its dynamic behavior. Chemical fractionation is frequently used to isolate more homogeneous SOM components, but the composition of fractions is frequently unknown. We characterized biochemical SOM composition in two previously studied soils from the USA, under contrasting land uses: cultivated agriculture and native vegetation. Bulk soils, as well as chemically isolated SOM fractions (humic acid, humin and non-acid hydrolysable), were analyzed using py-MBMS. Principal components analysis (PCA) showed distinct differences in the SOM composition of isolated fractions. Py-MBMS spectra and PCA loadings were dominated by low molecular weight fragments associated with peptides and other N-containing compounds. The py-MBMS spectra were similar for native whole-soil samples under different vegetation, while cultivation increased heterogeneity. An approach based on previously published data on marker signals also suggests the importance of peptides in distinguishing samples. While the approach described here represents significant progress in the characterization of changing SOM composition, a truly quantitative analysis will only be achieved using multiple internal standards and by correcting for inorganic interference during py-MBMS analysis. Overall, we have provided proof of principle that py-MBMS can be a powerful tool to understand the controls on SOM dynamics, and further method development is underway.     

Experimental evidence quantifying the role of benthic invertebrates in organic matter dynamics of headwater streams

SUMMARY. 1. The insecticide methoxychlor was applied seasonally to one of three small headwater streams in the southern Appalachian Mountains in North Carolina, U.S.A. The initial application caused massive invertebrate drift (>1,000,000 organisms/week) and resulted in a community with few shredders and reduced abundances of most insect taxa.
2. Bacterial densities and microbial respiration rates were not affected by treatment.
3. Disruption of the invertebrate community resulted in significant reductions in leaf litter processing rates (50–74% reduction depending on leaf species) and in the amount of leaf litter processed annually (reduction of 25–28%).
4. Reductions in leaf litter processing rates resulted in significant reductions in fine particulate organic matter (FPOM) export. Declines in both concentration and total export were detectable within 1 week of treatment. Annual FPOM export was reduced to 33% of pretreatment levels. Alteration to the invertebrate community had a much greater effect on FPOM export than a severe (50–200 year) drought.
6. Course particulate organic matter (CPOM) export was not significantly influenced by treatment but was influenced by hydrologic differences among years.     

Effects of augmentation of coarse particulate organic matter on metabolism and nutrient retention in hyporheic sediments

SUMMARY 1. Metabolic and biogeochemical processes in hyporheic zones may depend on inputs of coarse particulate organic matter. Our research focused on how differing quantity and quality of organic matter affects metabolism and nutrient retention in the hyporheic zone of a first-order Appalachian stream.
2. Sixteen plots were established on a tributary of Hugh White Creek, NC, U.S.A. Sediment was extracted and treated with leaves, wood, plastic strips or remained unamended. Following treatment, sediment was returned to the stream and, approximately 3 months later, samples were removed from each plot.
3. Aerobic and anaerobic metabolism were measured as the change in O₂ and CO₂ in recirculating microcosms. At the same time, we monitored other possible terminal electron accepting processes and changes in nutrient concentrations. Aerobic metabolism was low in all treatments and respiratory quotients calculated for all treatments indicated that metabolism was dominated by anaerobic processes.
4. Rates of anaerobic respiration and total (combined aerobic and anaerobic) respiration were significantly greater ( P  < 0.05) in plots treated with leaf organic matter compared to controls.
5. Addition of leaves, which had a low C:N ratio, stimulated respiration in hyporheic sediments. Anaerobic processes dominated metabolism in both control and amended sediments. Enhanced metabolic rates increased retention of many solutes, indicating that energy flow and nutrient dynamics in the subsurface of streams may depend upon the quantity and quality of imported carbon.     

Diversity of methanotrophic bacteria in tropical upland soils under different land uses

Three upland soils from Thailand, a natural forest, a 16-year-old reforested site, and an agricultural field, were studied with regard to methane uptake and the community composition of methanotrophic bacteria (MB). The methane uptake rates were similar to rates described previously for forest and farmland soils of the temperate zone. The rates were lower at the agricultural site than at the native forest and reforested sites. The sites also differed in the MB community composition, which was characterized by denaturing gradient gel electrophoresis (DGGE) of pmoA gene fragments (coding for a subunit of particulate methane monooxygenase) that were PCR amplified from total soil DNA extracts. Cluster analysis based on the DGGE banding patterns indicated that the MB communities at the forested and reforested sites were similar to each other but different from that at the farmland site. Sequence analysis of excised DGGE bands indicated that Methylobacter spp. and Methylocystis spp. were present. Sequences of the "forest soil cluster" or "upland soil cluster alpha," which is postulated to represent organisms involved in atmospheric methane consumption in diverse soils, were detected only in samples from the native forest and reforested sites. Additional sequences that may represent uncultivated groups of MB in the Gammaproteobacteria were also detected.     

Role of transported particulate organic matter in the macroinvertebrate colonization of litter bags in streams

1. The exposure of mesh litter bags has been widely used to investigate the role of benthic macroinvertebrates in leaf processing in freshwaters. In this sense, several studies have related litter bag breakdown rates to the presence of colonizing invertebrates. A possible confounding factor in such experiments is that the litter bags trap suspended particulate organic matter that can itself attract invertebrate colonists, irrespective of the intended experimental treatment.
2. We attempted to quantify the accumulation of particulate organic matter (POM) within litter bags and to investigate its possible impact on macroinvertebrate density and richness. In seven headwater forested streams we exposed mesh bags filled either with beech leaves ( Fagus sylvatica ) or with plastic strips of an equal surface area.
3. Principal component analysis (PCA) showed that bag type and stream were the main explanatory variables for invertebrate colonization and POM accumulation within the bags. In contrast, there was little variation among sampling dates (6.4% of the total inertia).
4. The accumulated POM within the bags was substantial (up to 8.83 g ash-free dry mass (AFDM)) but highly variable among sites (mean from 0.32 to 4.58 g AFDM). At each of the seven sites, both richness and abundance of invertebrates were positively correlated with the mass of accumulated POM in bags. Macroinvertebrate colonization (notably taxon richness) was directly linked with the quantity of POM accumulated.
5. Our findings provide evidence of a potential pitfall in linking invertebrates to litter processing in mesh bags, particularly when large amounts of POM, entrained in stream flow, accumulate within the bags. An evaluation of the POM mass trapped in litter bags could account for the erratic patterns sometimes observed in their colonization by invertebrates.     

Occurrence of natural organic chlorine in soils for different land uses

Consideration of natural formation of organochlorine compounds in soils is necessary in radioecology in order to understand chlorine radioisotope (³⁶Cl) cycling in various environments for safety assessment purposes, but also in ecotoxicology because certain chlorinated organics in soils are toxic compounds. On the other hand, occurrence of organic chlorine in soils is poorly documented, especially in non-forest ecosystems. We measured total and organic chlorine concentrations in 51 French surface soils sampled from grassland, arable and forest sites on a national scale (French soil quality monitoring network) in order to characterize the variability of organic chlorine concentrations for these different land uses. While previous studies reported that the chlorination of soil organic matter is responsible for chlorine retention in temperate forest ecosystems, this study shows that the non-extractable organohalogen pool accounts for the majority (>80 % on an average) of the total measurable chlorine in grassland and agricultural soils. This suggests that natural chlorination is a widespread phenomenon in all kinds of soils. A multiple linear regression analysis performed on the dataset indicated that retention of organochlorine in soils is related to the organic carbon content, Cl input and soil pH.