Biological physics in México

Biological and physical sciences possess a long-standing tradition of cooperativity as separate but related subfields of science. For some time, this cooperativity has been limited by their obvious differences in methods and views. Biological physics has recently experienced a kind of revival (or better a rebirth) due to the growth of molecular research on animate matter. New avenues for research have been opened for both theoretical and experimental physicists. Nevertheless, in order to better travel for such paths, the contemporary biological physicist should be armed with a set of specialized tools and methods but also with a new attitude toward multidisciplinarity. In this review article, we intend to somehow summarize what has been done in the past (in particular, as an example we will take a closer look at the Mexican case), to show some examples of fruitful investigations in the biological physics area and also to set a proposal of new curricula for physics students and professionals interested in applying their science to get a better understanding of the physical basis of biological function.     

Population biology patterns of commercially important mollusks in México

The need to propose recommendations for the management of over 80 species of bivalves and gastropod mollusks exploited commercially in Mexico, led to look for trends on the population and reproductive biology in relation to prevailing environmental conditions of the habitats where they are exploited. The reproductive cycle, growth parameters for the von Bertalanffy equation, mortality and recruitment of 18 populations of 14 species from 13 localities are compared and related to ambient temperature, precipitation, evaporation, geomorphology, tides, and water salinity and temperature. Localities were classified as influenced by landmasses or with marine influence, with a desert or tropical humid climate. With restricted or continuous communication to oceanic waters and with or without freshwater runoff. The reproductive cycles were classified in four groups in relation to intensity and duration of the spawning season: 1) limited to one annual spawning, 2) two or more defined spawning periods, 3) two or more extended spawning periods, and 4) continuous low intensity spawning. And three groups in relation to gonad recovery, and duration and intensity of gametogenesis: 1) post spawn and rest stages absent or restricted, 2) fast gametogenesis and a clear mature stage. and 3) extended gametogenesis and limited maturity stages. The population parameters were classified in relation to age structure and number of cohorts, intensity and duration of recruitment, and growth rates as expressed by infinity and K. In relation to their life cycle four types were found: 1) population represented by only one cohort, at least during part of the year, 2) with two or more cohorts at any time, 3) longevity under five years, and 4) longevity over live years. In relation to recruitment: 1) one recruitment period restricted to a short season, 2) two or more recruitment periods, 3) constant recruitment with one or more peaks, and 4) constant recruitment without periods of dominance.     

Susceptibility to mercurials of clinical Pseudomonas aeruginosa isolated in México

Susceptibility to inorganic mercuric ions and to organomercurials of 237 Pseudomonas aeruginosa clinical strains isolated in Mexico was determined by agar dilution tests. Resistant strains fell into two classes: i) narrow-spectrum resistant strains (27% of total isolates) resistant only to mercuric ions and to merbromin, and most grouped in pyocin type 1; and ii) broad-spectrum resistant strains (5%) with additional resistances to thimerosal, phenylmercury, methylmercury and p-hydroxymercuribenzoate, that belonged mostly to pyocin type 10. Mercurial resistant isolates showed a higher proportion of resistance to antibiotics and metals than did mercurial sensitive isolates, and broad-spectrum resistant strains had the highest frequency of resistance to antibiotics and to tellurite and arsenate.     

Superinfection between Influenza and RSV Alternating Patterns in San Luis Potosí State,México

The objective of this paper is to explain through the ecological hypothesis superinfection and competitive interaction between two viral populations and niche (host) availability, the alternating patterns of Respiratory Syncytial Virus (RSV) and influenza observed in a regional hospital in San Luis Potosí State, México using a mathematical model as a methodological tool. The data analyzed consists of community-based and hospital-based Acute Respiratory Infections (ARI) consultations provided by health-care institutions reported to the State Health Service Epidemiology Department from 2003 through 2009.     

Role of Fish in Structuring Invertebrates on Stromatolites in Cuatro Ciénegas, México

Stromatolites, the dominant Precambrian life form, declined in the Phanerozoic to occur today in only a few sites. This decline has been attributed to evolution of metazoan grazers, but stromatolites in our study site, Cuatro Ciénegas, Coahuila, México, harbor diverse macroinvertebrates. Drawing on food chain theory, we hypothesized that fish predation on invertebrates controls invertebrate populations, allowing stromatolites to flourish in Cuatro Ciénegas. Our experiment used small mesh (1 mm) cages to exclude all but larval fishes, and larger (6.5 mm) cages to exclude all larger fishes (including the molluscivorous and omnivorous endemic polymorphic cichlid, Herichthys minckleyi), but allow access to all sizes of the abundant endemic pupfish, Cyprinodon bifasciatus. No effects of treatments on invertebrate densities were noted at 6 week, but significant effects were observed on specific taxonomic groups after 3 month. In absence of fishes, hydrobiidae snails and ceratopogonids increased 3- and 5-fold, respectively, and invertebrate assemblage composition varied among treatments. Algal biomass was not affected by treatments, but algal species composition appeared to change. Overall results suggest that fish assemblages structure invertebrate assemblages, and that fishes may also be factors in determining algal communities.     

Freshwater fish at risk or extinct in México

The Mexican freshwater fish that are at risk orextinct are listed by family, state,basin/region, and causes of risk. Of the 506known species, 168 are at some level of risk,and 25 are believed to be extinct. States withthe most reports are: Chihuahua (46); Coahuila(35); Nuevo León (20); Sonora (19); Durango(18); and Tamaulipas (15). With the exceptionof Sonora, these states are largely located inthe Río Bravo region, and are all arid orsemiarid. Most extinctions have occurred inNuevo León (8) and Coahuila (7). The maincauses of risk reported are: habitat reductionor alteration (86); water depletion (83);presence of exotics (76); small or decliningpopulation (73); and small habitat (57). Allof which result in very local endemism. Thesecauses of risk develop easily when thedistribution is small. The critical factor isaridity, which is associated withdesertization. Water conflicts were to beexpected, and the result is resource nonsustainability.     

Interruption of Transmission of Onchocerca volvulus in the Southern Chiapas Focus,México

Background

The Southern Chiapas focus of onchocerciasis in Southern Mexico represents one of the major onchocerciasis foci in Latin America. All 559 endemic communities of this focus have undergone semi-annual mass treatment with ivermectin since 1998. In 50 communities of this focus, ivermectin frequency shifted from twice to four times a year in 2003; an additional 113 communities were added to the quarterly treatment regimen in 2009 to achieve a rapid suppression of transmission.

Methodology/Principal findings

In-depth epidemiologic and entomologic assessments were performed in six sentinel communities (which had undergone 2 rounds of ivermectin treatment per year) and three extra-sentinel communities (which had undergone 4 rounds of ivermectin treatment per year). None of the 67,924 Simulium ochraceum s.l. collected from this focus during the dry season of 2011 were found to contain parasite DNA when tested by polymerase chain reaction-enzyme-linked immunosorbent assay (PCR-ELISA), resulting in an upper bound of the 95% confidence interval (95%-ULCI) of the infective rate in the vectors of 0.06/2,000 flies examined. Serological assays testing for Onchocerca volvulus exposure conducted on 4,230 children 5 years of age and under (of a total population of 10,280 in this age group) revealed that 2/4,230 individuals were exposed to O. volvulus (0.05%; one sided 95% confidence interval = 0.08%).

Conclusions/Significance

The in-depth epidemiological and entomological findings from the Southern Chiapas focus meet the criteria for interruption of transmission developed by the international community.     

Frequency of antibodies to Toxoplasma gondii in stray dogs of Oaxaca, México

We studied the frequency of antibodies against Toxoplasma gondii in stray dogs in the city of Oaxaca, Mexico through the evaluation of 154 sera by indirect ELISA. A frequency of 61.7% was found; it was higher in males (45 of 65, 69.2%) than in females (49 of 89, 55.0%), although this difference was not statistically significant. An increase in frequency was observed with age, the lowest being among animals younger than 1 yr (4 of 20, 20.0%) and the highest in dogs older than 7 yr (21 of 25, 84.0%). This is the first study in dogs of this region of Mexico and revealed high T. gondii transmission and evidence of early exposure in animals that are in close contact with contaminated water or raw meat, or both. Further studies are needed in order to understand the role of T. gondii infection in public health.     

Terrestrial gastropods zoogeography in Southern Tamaulipas, México

Biogeography of Mexican terrestrial mollusks is poorly known, although many studies have described some of their biological aspects. This study aimed to contribute with new information on the distribution of terrestrial mollusks in this region of high altitudinal, topographic and climatic variations of Southern Tamaulipas State, México. For this, terrestrial gastropods were surveyed from December 1990 to November 2006. A total of 525 samples were obtained from 121 localities, characterized with different vegetation types. The primary zoogeographical feature was the presence of many endemic taxa, with 45 species or subspecies, representing the 43%, the highest value for Northeastern México. In addition, a total of 24 species (23%), were of Neotropical and Neartic distributions, and 15 species or subspecies (14%) exhibited Neotropical distributions. Furthermore, the family Spiraxidae showed the largest number of endemic species, with 17 species and two subspecies, and had the largest number of endemic species (27) for Northeastern México.     

Heterogeneity of xerophytic vegetation of limestone outcrops in a tropical deciduous forest region in southern México

The heterogeneity of xerophytic vegetation developing on limestone outcrops immersed in a tropical deciduous forest matrix was studied in Nizanda (S México). The study units comprised three clearly distinct communities based on their physiognomy and substrate, representing a gradient of edaphic aridity: (1) xerophytic scrub (XS); (2) tropical deciduous forest on rock (TDFr); and (3) tropical deciduous forest on deeper soil (TDFs). Structural and floristic variables were gathered in nine 100 m² plots by community. In the 0.27 ha sampled 211 plant species were recorded. Total floristic richness by community decreased with increasing edaphic aridity: 159 species in TDFs, 107 in TDFr, and 36 in XS. Although significant differences were observed between the three communities for only four structural variables (total and upper stratum species densities, and relative monocotyledon density and cover), other variables confirmed the differences between the two forest communities and the XS (total and upper stratum cover, density, and basal area). TDFr and XS also differed from TDFs with respect to lower stratum species density, and absolute monocotyledon density and cover. The results showed the importance of monocotyledons and the prevalence of clonality in TDFr and XS. A comparison between limestone outcrop and inselberg vegetation indicated a virtual absence of therophytes, graminoid herbs, cryptogamic crusts, and desiccation-tolerant and carnivorous plants in the former, whereas the prevalence of monocotyledon mats, and xerophytic and succulent plants is the most striking similarity between these rocky environments. Xerophytic vegetation of limestone outcrops in Nizanda may be seen as analogous of relictual communities that existed during a northbound migration of Neotropical flora, towards the arid zones of North America.     

Vine species diversity across environmental gradients in northwestern México

The presence of vines has been described as a distinctive feature of tropical forests. However, vine species diversity exhibits trends across environmental gradients that are not well documented. Here we use a latitudinal and a rainfall gradient along the Pacific slope of México to explore the influence of environmental factors on vine species diversity. A total of 630 vines species were detected on the Pacific slope of México. Tropical deciduous forest (TDF) floras were composed of greater percentages of vines (5–16%) than desert floras (1–3%). Four families (Convolvulaceae, Fabaceae, Cucurbitaceae and Asclepiadaceae) composed 40–60% of the vines of the region. Changes in vine composition were gradual along the Pacific slope. The percentage of vines in floras declines with latitude. Annual rainfall and the minimum temperature of January were significantly associated with the latitudinal decline in the percentage of vines. A total of 43 species, mostly herbaceous vines, were detected along a rainfall gradient in northwestern México. Along the rainfall gradient, the number of vine species increased from 3 to 28 as summer rainfall, plant cover and canopy stature increased. Vine species richness and diversity increased from the desert to the TDF, especially along streams. Leaf area (LA) ranged from 0.6 to 284cm² and specific leaf area (SLA) from 80 to 904cm²/g among the most common vine species. Community averages of LA and SLA decreased toward drier sites. These results are discussed within the context of our current knowledge about the role of the environment in limiting the distribution of vines.     

From Isozymes to Genomics: Population Genetics and Conservation of Agave in México

Mexico is a megadiverse country, but less than 54 % of its original vegetation still remains. In particular Mexican deserts and arid and semiarid ecosystems harbor a large number of endemic taxa, and the genus Agave is an outstanding example. Agave is one of the largest genera of the Mexican flora, including a total estimated number of 200 species, 74 % of them endemic to the country. Agave is also one of the Mexican plant genera with more population genetic studies. We describe here studies in 22 Agave species using different genetic markers. For the genus we found on average a high level of genetic variation, H _s ?=?0.19, and a low genetic differentiation, F _st ?=?0.15. We identify some species that should be subject to special conservation genetic efforts, in particular the endangered A. victoriae-reginae and both wild populations and landraces of A. angustifolia, including the cultivated A. tequilana.     

Spoligotype analysis of Mycobacterium bovis isolates from Northern México

Bovine tuberculosis is still rife in Latin America, producing huge economic losses. There are very few studies of the way this disease is spread through this geographical region, particularly in countries that border those that are almost free of Mycobacterium bovis. In this work, we have analyzed the spacer oligonucleotide typing (spoligotype) patterns of M. bovis isolates from cattle at Ciudad Juárez, a Mexican city close to El Paso, Texas. Fifty-eight M. bovis isolates collected from a herd in Northern Mexico were studied by spoligotyping. Nine spoligotype patterns were observed in total. Two were predominant (SB0121 and SB0140) and accounted for 50% and 14% of the isolates, respectively. Six patterns were found to be already described in an international M. bovis spoligotype database, while the other three (SB0985, SB0986, and SB0987) were novel. Interestingly, none of the isolates corresponded to any other Mexican pattern previously reported. This is the first spoligotype analysis of M. bovis strains from a border city between Mexico and the United States. The necessity for further studies to formulate a better identification of M. bovis strains within, and its dissemination between, the two countries is discussed.     

Territoriality and Survivorship of the Sierra Madre Sparrow in La Cima,México

We studied the life-history of the Sierra Madre sparrow (Xenospiza baileyi) in a subalpine grassland-agriculture mosaic south of Mexico City. From March to early September 1999 we captured and color-banded 53 adults with mist-nets and mapped the breeding territories of 21 males. We again mapped territories in the same spot in April and May 2000. The number of breeding territories was found to be the same in the two consecutive years and interannual survivorship was found to be relatively high. Breeding territories were restricted to the bunchgrass-covered areas. We used the density of territories and the amount of remaining habitat to estimate a total population size of 5,380–6,150 adults for this species. Using this and other recent data, we recommend raising the Sierra Madre sparrow to the status of critically endangered using BirdLife International criteria.     

Recent Rapid Rise of a Permethrin Knock Down Resistance Allele in Aedes aegypti in México

Background

Aedes aegypti, the ‘yellow fever mosquito’, is the primary vector to humans of dengue and yellow fever flaviviruses (DENV, YFV), and is a known vector of the chikungunya alphavirus (CV). Because vaccines are not yet available for DENV or CV or are inadequately distributed in developing countries (YFV), management of Ae. aegypti remains the primary option to prevent and control outbreaks of the diseases caused by these arboviruses. Permethrin is one of the most widely used active ingredients in insecticides for suppression of adult Ae. aegypti. In 2007, we documented a replacement mutation in codon 1,016 of the voltage-gated sodium channel gene (para) of Ae. aegypti that encodes an isoleucine rather than a valine and confers resistance to permethrin. Ile1,016 segregates as a recessive allele conferring knockdown resistance to homozygous mosquitoes at 5–10 µg of permethrin in bottle bioassays.

Methods and Findings

A total of 81 field collections containing 3,951 Ae. aegypti were made throughout México from 1996 to 2009. These mosquitoes were analyzed for the frequency of the Ile1,016 mutation using a melting-curve PCR assay. Dramatic increases in frequencies of Ile1,016 were recorded from the late 1990''s to 2006–2009 in several states including Nuevo León in the north, Veracruz on the central Atlantic coast, and Yucatán, Quintana Roo and Chiapas in the south. From 1996 to 2000, the overall frequency of Ile1,016 was 0.04% (95% confidence interval (CI95) = 0.12%; n = 1,359 mosquitoes examined). The earliest detection of Ile1,016 was in Nuevo Laredo on the U.S. border in 1997. By 2003–2004 the overall frequency of Ile1,016 had increased ∼100-fold to 2.7% (±0.80% CI95; n = 808). When checked again in 2006, the frequency had increased slightly to 3.9% (±1.15% CI95; n = 473). This was followed in 2007–2009 by a sudden jump in Ile1,016 frequency to 33.2% (±1.99% CI95; n = 1,074 mosquitoes). There was spatial heterogeneity in Ile1,016 frequencies among 2007–2008 collections, which ranged from 45.7% (±2.00% CI95) in the state of Veracruz to 51.2% (±4.36% CI95) in the Yucatán peninsula and 14.5% (±2.23% CI95) in and around Tapachula in the state of Chiapas. Spatial heterogeneity was also evident at smaller geographic scales. For example within the city of Chetumal, Quintana Roo, Ile1,016 frequencies varied from 38.3%–88.3%. A linear regression analysis based on seven collections from 2007 revealed that the frequency of Ile1,016 homozygotes accurately predicted knockdown rate for mosquitoes exposed to permethrin in a bioassay (R² = 0.98).

Conclusions

We have recorded a dramatic increase in the frequency of the Ile1,016 mutation in the voltage-gated sodium channel gene of Ae. aegypti in México from 1996 to 2009. This may be related to heavy use of permethrin-based insecticides in mosquito control programs. Spatial heterogeneity in Ile1,016 frequencies in 2007 and 2008 collections may reflect differences in selection pressure or in the initial frequency of Ile1,016. The rapid recent increase in Ile1,016 is predicted by a simple model of positive directional selection on a recessive allele. Unfortunately this model also predicts rapid fixation of Ile1,016 unless there is negative fitness associated with Ile1,016 in the absence of permethrin. If so, then spatial refugia of susceptible Ae. aegypti or rotational schedules of different classes of adulticides could be established to slow or prevent fixation of Ile1,016.     

Monogeneans in introduced and native cichlids in México: evidence for transfer

We examined 2 cichlid fish species native to México, Cichlasoma callolepis and C. fenestratum, and 2 introduced African cichlids, Oreochromis aureus and O. niloticus, from 3 localities in southeastern México for monogeneans. Six monogenean species infected the African cichlids: Cichlidogyrus haplochromii, C. dossoui, C. longicornis longicornis, C. sclerosus, C. tilapiae, and Enterogyrus malmbergi. We found all these parasite species, except C. haplochromii and C. dossoui, on the native C. fenestratum and C. callolepis. Prevalences of Cichlidogyrus spp. were 3-10% and abundances ranged from 0.03 +/- 0.2 to 0.1 +/- 0.3 for native cichlids. We only recovered a single E. malmbergi from 1 C. callolepis. We found Sciadicleithrum bravohollisae, a monogenean of native Cichlasoma spp., on the gills of the introduced O. aureus from Lake Catemaco (prevalence 3%, abundance 0.03 +/- 0.2). Although prevalence and abundance in atypical hosts were fairly low, the present findings provide evidence of monogenean transfer from African to American cichlids and vice versa. This is the first record of exotic monogeneans in the genus Cichlidogyrus and Enterogyrus infecting native American cichlid fish. It is also the first record from southeastern México of a native American monogenean infecting introduced African cichlids.     

Gross precipitation and throughfall chemistry in legume species planted in Northeastern México

Plant cover modifies throughfall chemistry, and the solute concentration is dependent on the plant species at any given site. The chemistry of gross rainfall and throughfall of four endemic species planted in northeastern Mexico was evaluated from March 1996 to March 1997. Chemical solutes measured included Ca, K, Mg, Na, Fe, Mn, Cu, and Zn. Dry deposition and canopy leaching fluxes were estimated following the canopy budget model. Variance analyses tested the statistical dependence of the total and net fluxes on the species and seasons. Regression analysis tested the dependence of chemical concentrations on rainfall depth and lag time between rains. A total of 52 rainfall events were recorded during the study period summing 523 mm. Significant differences were noted on the total and net fluxes between the plant species. For total flux, average throughfall (37.8 kg ha^?1 year^?1) almost doubled the flux of solutes compared to rainfall (24.1 kg ha^?1 year^?1). Pithecellobium ebano (Berland.) C.H. Mull. (43.3 kg ha^?1 year^?1), Acacia berlandieri Benth. (38.7 kg ha^?1 year^?1), and Pithecellobium pallens (Bent.) Standl. (38.4 kg ha^?1 year^?1) recorded the highest total flux of solutes, and Acacia rigidula Benth. (30.9 kg ha^?1 year^?1) the smallest. Chemical solutes showed significant differences for total and net fluxes. Ca was the dominant cation with 48% and 52% of the total constituent flux for rainfall and throughfall, respectively. However, K, Mg and Cu approximately doubled in throughfall in contrast to gross rainfall. Species with the largest aboveground biomass had lower throughfall volumes (i.e., higher interception rates) but higher chemical solute inputs to the forest floor. Rainfall depth and lag time between rains explained part of the variation for most species, stressing the partial dependence of the washing effect and the amount of dry deposition on canopies. This research discusses the importance and the sources of incoming solutes on the studied plant species.     

The effect of tidal exclusion on salt marsh vegetation in Baja California,México

Changes in salt marsh vegetation were analyzed over a two-year period (November 1984–November 1986) following the construction of a dike in the southwest corner of Punta Banda Estuary, Baja California, México. Changes included: increased interstitial soil salinity, reduced soil moisture, increased mortality of Spartina foliosa and decreased middle marsh species diversity due to the elimination of annual and short-lived species. The sea-side edge of the middle marsh shifted its boundary to a lower elevation. By the end of 1986, dominant species were Salicornia virginica, Batis maritima and Frankenia grandifolia. By October 1988, only a few patches of S. foliosa persisted at the water edge, and it appeared that the community was not yet stable. The potential future of the estuary is evaluated.