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1.
Rupal Chauhan Yogesh Jasrai Himanshu Pandya Suman Chaudhari Chand Mal Samota 《Bioinformation》2014,10(9):595-598
Fruit Crops Diseases Database (FCDD) requires a number of biotechnology and bioinformatics tools. The FCDD is a unique
bioinformatics resource that compiles information about 162 details on fruit crops diseases, diseases type, its causal organism,
images, symptoms and their control. The FCDD contains 171 phytochemicals from 25 fruits, their 2D images and their 20 possible
sequences. This information has been manually extracted and manually verified from numerous sources, including other electronic
databases, textbooks and scientific journals. FCDD is fully searchable and supports extensive text search. The main focus of the
FCDD is on providing possible information of fruit crops diseases, which will help in discovery of potential drugs from one of the
common bioresource-fruits. The database was developed using MySQL. The database interface is developed in PHP, HTML and
JAVA. FCDD is freely available.
Availability
http://www.fruitcropsdd.com/ 相似文献2.
Kumudini Tota Nihar Rayabarapu Sowmya Moosa Venu Talla Balaji Bhyravbhatla Srinivasa Rao 《Bioinformation》2013,9(7):378-380
According to International Diabetes Federation (IDF), India has 62.4 million people with diabetes and by 2030 it is predicted that
the number will rise to 100 million. Studies claim that there are around 410 experimentally proven Indian medicinal plants which
have anti-diabetic activity, of which the mechanism of action of 109 plants has been elucidated or reported. So, the need of the hour
is to explore the claims of Indian medicinal flora and open up the facets of many Indian plants which are being examined for their
beneficial role in diabetes. So, we created a database (InDiaMed) of Indian medicinal plants that captures their role in anti-diabetic
activity. InDiaMed''s features include chemical, pharmacological, biochemical and geographical information of the medicinal plant,
scientifically relevant information of the plant, and the coherent research done on it in the field of diabetes. The database also
includes the list of poly-herbal formulations which are used for treatment of diabetes in India.
Availability
http://www.indiamed.info 相似文献3.
Priyanka James Vipin Anithottam Mathai Silpa Shajikumar Priya Antony Pereppadan Parvathi Sudha Raghunath Keshavachandran Puthiyaveetil Abdulla Nazeem 《Bioinformation》2013,9(18):941-943
Medicinal plants and plant derived molecules are widely used in traditional cultures all over the world and they are becoming
large popular among biomedical researchers and pharmaceutical companies as a natural alternative to synthetic medicine.
Information related to medicinal plants and herbal drugs accumulated over the ages are scattered and unstructured which make it
prudent to develop a curated database for medicinal plants. The Antidiabetic and Anticancer Medicinal Plants Database
(DIACAN) aims to collect and provide an integrated platform for plants and phytochemiclas having antidiabetic or anticancer activity.
Availability
http://www.kaubic.in/diacan 相似文献4.
Shanmugam Anandakumar Saravanan Vijayakumar Nagarajan Arumugam M Michael Gromiha 《Bioinformation》2015,11(11):512-513
Mammalian Mitochondrial ncRNA is a web-based database, which provides specific information on non-coding RNA in mammals.
This database includes easy searching, comparing with BLAST and retrieving information on predicted structure and its function
about mammalian ncRNAs.
Availability
The database is available for free at http://www.iitm.ac.in/bioinfo/mmndb/ 相似文献5.
Diabetes, a chronic disease debilitating to normal healthy lifestyle, onsets due to insufficient amount of insulin production or
ineffective utilization of the amount produced. Although, pharmaceutical research has brought up remedial drugs and numerous
candidates in various phases of clinical trials, off-target effects and unwanted physiological actions are a constant source of concern
and contra indicatory in case of diabetic patients. Here we present a phytoremedial database, Phyto Diab Care, broadly applicable
to any known anti-diabetic medicinal plant and phytochemicals sourced from them. Utilization of the traditional medicine
knowledge for combating diabetes without creating unwanted physiological actions is our major emphasis. Data collected from
peer-reviewed publications and phytochemicals were added to the customizable database by means of an extended relational
design. The strength of this resource is in providing rapid retrieval of data from large volumes of text at a high degree of accuracy.
Enhanced web interface allows multi-criteria based information filtering. Furthermore, the availability of 2D and 3D structures
from molecular docking studies with any efficacy on the insulin signaling pathway makes the resource searchable and comparable
in an intuitive manner. Phyto Diab Care compendium is publicly available and can be found in online.
Availability
http://www.gbpuat-cbsh.ac.in/departments/bi/database/phytodiabcare/HOME%20PAGE/Home%20page.html 相似文献6.
7.
Dimitri Brosens Fran?ois Vankerkhoven David Ignace Philippe Wegnez Nicolas Noé André Heughebaert Jeannine Bortels Wouter Dekoninck 《ZooKeys》2013,(306):59-70
FORMIDABEL is a database of Belgian Ants containing more than 27.000 occurrence records. These records originate from collections, field sampling and literature. The database gives information on 76 native and 9 introduced ant species found in Belgium. The collection records originated mainly from the ants collection in Royal Belgian Institute of Natural Sciences (RBINS), the ‘Gaspar’ Ants collection in Gembloux and the zoological collection of the University of Liège (ULG). The oldest occurrences date back from May 1866, the most recent refer to August 2012. FORMIDABEL is a work in progress and the database is updated twice a year.The latest version of the dataset is publicly and freely accessible through this url: http://ipt.biodiversity.be/resource.do?r=formidabel. The dataset is also retrievable via the GBIF data portal through this link: http://data.gbif.org/datasets/resource/14697A dedicated geo-portal, developed by the Belgian Biodiversity Platform is accessible at: http://www.formicidae-atlas.bePurpose: FORMIDABEL is a joint cooperation of the Flemish ants working group “Polyergus” (http://formicidae.be) and the Wallonian ants working group “FourmisWalBru” (http://fourmiswalbru.be). The original database was created in 2002 in the context of the preliminary red data book of Flemish Ants (Dekoninck et al. 2003). Later, in 2005, data from the Southern part of Belgium; Wallonia and Brussels were added. In 2012 this dataset was again updated for the creation of the first Belgian Ants Atlas (Figure 1) (Dekoninck et al. 2012). The main purpose of this atlas was to generate maps for all outdoor-living ant species in Belgium using an overlay of the standard Belgian ecoregions. By using this overlay for most species, we can discern a clear and often restricted distribution pattern in Belgium, mainly based on vegetation and soil types.Open in a separate windowFigure 1.www.formicidae-atlas.be 相似文献
8.
Mohammad Arif Ashraf Achia Khatun Tanzila Sharmin Faraid Mobin Arifur Rahman Tanu Toufique Morshed Tawkir Ahmad Fakir Rifat Ara Begum AHM Nurun Nabi 《Bioinformation》2014,10(6):384-386
The term of medicinal plants include a various types of plants used in herbalism with medicinal activities. These plants are
considered as rich resources of ingredients which can be used as complementary and alternative medicines and, also in drug
developments and synthesis. In addition, some plants regarded as valuable origin of nutrition. Thus, all these plants are
recommended as therapeutic agents. Information related to medicinal plants and herbal drugs accumulated over the ages are
scattered and unstructured which make it prudent to develop a curated database for medicinal plants. MPDB 1.0 database is
dedicated to provide the first window to find the plants around Bangladesh claimed to have medicinal and/or nutritive values by
accumulating data from the published literatures. This database contains 406 medicinal plants with their corresponding scientific,
family and local names as well as utilized parts for treatment from different districts of Bangladesh. Information regarding
ailments is available for 353 plants. In addition, we have found active compounds for 78 plants with their corresponding PubMed
ID.
Availability
www.medicinalplantbd.net 相似文献9.
10.
A Genomic Target Database (GTD) has been developed having putative genomic drug targets for human bacterial pathogens. The selected
pathogens are either drug resistant or vaccines are yet to be developed against them. The drug targets have been identified using subtractive
genomics approaches and these are subsequently classified into
- Drug targets in pathogen specific unique metabolic pathways,
- Drug targets in host-pathogen common metabolic pathways, and
- Membrane localized drug targets.
Availability
GTD is available at IIOAB website http://www.iioab.webs.com/GTD.htm. It can also be accessed at http://www.iioabdgd.webs.com.GTD is free for academic research and non-commercial use only. Commercial use is strictly prohibited without prior permission from IIOAB. 相似文献11.
Sushil Kumar Middha Yashoda Mittal Talembedu Ushal Dharmendra Kumar Ranjani Srinivasan Laxmikant Vashisth Biplab Bhattacahrgae Madhugiri Bhojangarao Nagaveni 《Bioinformation》2009,4(2):78-79
Herbs are the base used for treatment in Ayurveda. We describe a database named Phyto-Mellitus with information on plants traditionally used
for diabetes with their chemical constituents. The active principles of these plants are antioxidant and free radical scavenging.
Availability
http://www.bicmlacw.org/bt/ 相似文献12.
Padavala Ajay Babu Suma Sree Puppala Satyavarapu Lakshmi Aswini Metta Ramya Vani Chinta Narasimha Kumar Tallapragada Prasanna 《Bioinformation》2008,3(3):142-143
Marine compound database consists of marine natural products and chemical entities, collected from various literature sources,
which are known to possess bioactivity against human diseases. The database is constructed using html code. The 12 categories
of 182 compounds are provided with the source, compound name, 2-dimensional structure, bioactivity and clinical trial
information. The database is freely available online and can be accessed at
http://www.progenebio.in/mcdb/index.htm 相似文献
13.
Seed storage proteins, the major food proteins, possess unique physicochemical characteristics which determine their nutritional
importance and influence their utilization by humans. Here, we describe a database driven tool named Seed Pro-Nutra Care which
comprises a systematic compendium of seed storage proteins and their bioactive peptides influencing several vital organ systems
for maintenance of health. Seed Pro-Nutra Careis an integrated resource on seed storage protein. This resource help in the (I)
Characterization of proteins whether they belong to seed storage protein group or not. (II) Identification the bioactive peptides
with their sequences using peptide name (III) Determination of physico chemical properties of seed storage proteins. (IV) Epitope
identification and mapping (V) Allergenicity prediction and characterization. Seed Pro-Nutra Care is a compilation of data on
bioactive peptides present in seed storage proteins from our own collections and other published and unpublished sources. The
database provides an information resource of a variety of seed related biological information and its use for nutritional and
biomedical application.
Availability
http://www.gbpuat-cbsh.ac.in/departments/bi/database/seed_pro_nutra_care/ 相似文献14.
ChangKug Kim SooJin Kwon GangSeob Lee HwanKi Lee JiWeon Choi YongHwan Kim JangHo Hahn 《Bioinformation》2009,3(8):344-345
The AllergenPro database has developed a web-based system that will provide information about allergen in microbes, animals and plants. The database has three major parts and
functions:(i) database list; (ii) allergen search; and (iii) allergenicity prediction. The database contains 2,434 allergens related information readily available in the database
such as on allergens in rice microbes (712 records), animals (617 records) and plants (1,105 records). Furthermore, this database provides bioinformatics tools for allergenicity
prediction. Users can search for specific allergens by various methods and can run tools for allergenicity prediction using three different methods.
Availability
The database is available for free at http://www.niab.go.kr/nabic/ 相似文献15.
Petros Kountouris Carsten W. Lederer Pavlos Fanis Xenia Feleki John Old Marina Kleanthous 《PloS one》2014,9(7)
Inherited haemoglobinopathies are the most common monogenic diseases, with millions of carriers and patients worldwide. At present, we know several hundred disease-causing mutations on the globin gene clusters, in addition to numerous clinically important trans-acting disease modifiers encoded elsewhere and a multitude of polymorphisms with relevance for advanced diagnostic approaches. Moreover, new disease-linked variations are discovered every year that are not included in traditional and often functionally limited locus-specific databases. This paper presents IthaGenes, a new interactive database of haemoglobin variations, which stores information about genes and variations affecting haemoglobin disorders. In addition, IthaGenes organises phenotype, relevant publications and external links, while embedding the NCBI Sequence Viewer for graphical representation of each variation. Finally, IthaGenes is integrated with the companion tool IthaMaps for the display of corresponding epidemiological data on distribution maps. IthaGenes is incorporated in the ITHANET community portal and is free and publicly available at http://www.ithanet.eu/db/ithagenes. 相似文献
16.
Cry‐Bt identifier: A biological database for PCR detection of Cry genes present in transgenic plants
We describe the development of a user friendly tool that would assist in the retrieval of information relating to Cry genes in transgenic
crops. The tool also helps in detection of transformed Cry genes from Bacillus thuringiensis present in transgenic plants by providing
suitable designed primers for PCR identification of these genes. The tool designed based on relational database model enables easy retrieval
of information from the database with simple user queries. The tool also enables users to access related information about Cry genes present
in various databases by interacting with different sources (nucleotide sequences, protein sequence, sequence comparison tools, published
literature, conserved domains, evolutionary and structural data).
Availability
http://insilicogenomics.in/Cry-btIdentifier/welcome.html 相似文献17.
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19.
Wood quality can be defined in terms of particular end use with the involvement of several traits. Over the last fifteen years
researchers have assessed the wood quality traits in forest trees. The wood quality was categorized as: cell wall biochemical traits,
fibre properties include the microfibril angle, density and stiffness in loblolly pine [1]. The user friendly and an open-access
database has been developed named Wood Gene Database (WGDB) for describing the wood genes along the information of
protein and published research articles. It contains 720 wood genes from species namely Pinus, Deodar, fast growing trees namely
Poplar, Eucalyptus. WGDB designed to encompass the majority of publicly accessible genes codes for cellulose, hemicellulose and
lignin in tree species which are responsive to wood formation and quality. It is an interactive platform for collecting, managing and
searching the specific wood genes; it also enables the data mining relate to the genomic information specifically in Arabidopsis
thaliana, Populus trichocarpa, Eucalyptus grandis, Pinus taeda, Pinus radiata, Cedrus deodara, Cedrus atlantica. For user convenience, this
database is cross linked with public databases namely NCBI, EMBL & Dendrome with the search engine Google for making it more
informative and provides bioinformatics tools named BLAST,COBALT.
Availability
The database is freely available on www.wgdb.in 相似文献20.
Ji-Hyun Lee Kyoung Mii Park Dong-Jin Han Nam Young Bang Do-Hee Kim Hyeongjin Na Semi Lim Tae Bum Kim Dae Gyu Kim Hyun-Jung Kim Yeonseok Chung Sang Hyun Sung Young-Joon Surh Sunghoon Kim Byung Woo Han 《PloS one》2015,10(11)
Despite the growing attention given to Traditional Medicine (TM) worldwide, there is no well-known, publicly available, integrated bio-pharmacological Traditional Korean Medicine (TKM) database for researchers in drug discovery. In this study, we have constructed PharmDB-K, which offers comprehensive information relating to TKM-associated drugs (compound), disease indication, and protein relationships. To explore the underlying molecular interaction of TKM, we integrated fourteen different databases, six Pharmacopoeias, and literature, and established a massive bio-pharmacological network for TKM and experimentally validated some cases predicted from the PharmDB-K analyses. Currently, PharmDB-K contains information about 262 TKMs, 7,815 drugs, 3,721 diseases, 32,373 proteins, and 1,887 side effects. One of the unique sets of information in PharmDB-K includes 400 indicator compounds used for standardization of herbal medicine. Furthermore, we are operating PharmDB-K via phExplorer (a network visualization software) and BioMart (a data federation framework) for convenient search and analysis of the TKM network. Database URL: http://pharmdb-k.org, http://biomart.i-pharm.org. 相似文献