Conservation of Atlantic sturgeon <Emphasis Type="Italic">Acipenser oxyrinchus oxyrinchus</Emphasis>: delineation of stock structure and distinct population segments

The anadromous Atlantic sturgeon Acipenser oxyrinchus oxyrinchus, a wide-ranging species along the Atlantic Coast of North America, is being considered for federal listing under the U.S. Endangered Species Act. Identification of distinct population segments (DPS) is necessary but problematic for highly vagile species such as Atlantic sturgeon which may spend a high proportion of their lives outside of their natal estuaries. Characterization of genetic differentiation and estimates of gene flow provide a quantitative measure of the number of DPS into which species could be divided over their distribution and the reproductive independence of each unit. We sequenced a portion of the mitochondrial DNA control region to characterize population structure and gene flow across all naturally reproducing populations from which specimens could be obtained. We then considered these genetic data along with ancillary information on life history characteristics, historical fisheries data, and trajectories of abundance to determine the number of DPS into which this species should be divided. Our results suggest that philopatry is high for Atlantic sturgeon and that each U.S. estuary analyzed hosts genetically distinct populations of Atlantic sturgeon. We conclude that at least nine DPS of Atlantic sturgeon exist along the Atlantic Coast of the U.S. In contrast, the Atlantic Sturgeon Status Review Team has proposed a five DPS scheme for this subspecies based largely on results from nuclear DNA microsatellites, but with fewer populations represented and lower samples sizes. These different conclusions illustrate the somewhat arbitrary nature of the DPS concept, at least as applied to Atlantic sturgeon.     

Mitochondrial DNA variation, effective female population size and population history of the endangered Chinese sturgeon, Acipenser sinensis

The anadromous Chinese sturgeon (Acipenser sinensis), mainly endemic to the Yangtze River in China, is an endangered fish species. The natural population has declined since the Gezhouba Dam blocked its migratory route to the spawning grounds in 1981. In the near future, the completion of the Three Gorges Dam, the world's largest hydroelectric project, may further impact this species by altering the water flow of the Yangtze River. Little is currently known about the population genetic structure of the Chinese sturgeon. In this study, DNA sequence data were determined from the control region (D-loop) of the mitochondrial genome of adult sturgeons (n = 106) that were collected between 1995–2000. The molecular data were used to investigate genetic variation, effective female population size and population history of the Chinese sturgeon in the Yangtze River. Our results indicate that the reduction in abundance did not change genetic variation of the Chinese sturgeon, and that the population underwent an expansion in the past. AMOVA analysis indicated that 98.7% of the genetic variability occurred within each year's spawning populations, the year of collection had little influence on the diversity of annual temporary samples. The relative large effective female population size (N _ef) indicates that good potential exists for the recovery of this species in the future. Strikingly, the ratio of N _ef to the census female population size (N _f) is unusually high (0.77–0.93). This may be the result of a current bottleneck in the population of the Chinese sturgeon that is likely caused by human intervention. This revised version was published online in July 2006 with corrections to the Cover Date.     

Evaluation of a remnant lake sturgeon population’s utility as a source for reintroductions in the Ohio River system

The selection of an appropriate source population may be crucial to the long-term success of reintroduction programs. Appropriate source populations often are those that originate from the same genetic lineage as native populations. However, source populations also should exhibit high levels of genetic diversity to maximize their capacity to adapt to variable environmental conditions. Finally, it is preferable if source populations are genetically representative of historical lineages with little or no contamination from non-native or domesticated stocks. Here, we use nuclear (microsatellite) and cytoplasmic (mitochondrial control region) markers to assess the genetic suitability of a potential source population inhabiting the White River in Indiana: the last extant lake sturgeon population in the Ohio River drainage. The White River population exhibited slightly lower levels of genetic diversity than other lake sturgeon populations. However, the population’s two private microsatellite alleles and three private haplotypes suggest a unique evolutionary trajectory. Population assignment tests revealed only two putative migrants in the White River, indicating the population has almost completely maintained its genetic integrity. Additionally, pairwise F _ST estimates indicated significant levels of genetic divergence between the White River and seven additional lake sturgeon populations, suggesting its genetic distinctiveness. These data indicate that the White River population may be the most suitable source population for future lake sturgeon reintroductions throughout the Ohio River drainage. Furthermore, the White River population appears to be a reservoir of unique genetic information and reintroduction may be a necessary strategy to ensure the persistence of this important genetic lineage.     

Genetic issues in aquatic species management: the shortnose sturgeon (Acipenser brevirostrum) in the southeastern United States

Anadromous species occupy multiple freshwater,estuarine, and marine habitats, which posesspecial challenges in wildlife management. Inparticular, the level of immigration betweendrainages can be a critical factor in thedefinition of management units and the designof population-specific stocking programs. Thesemi-anadromous shortnose sturgeon (Acipenser brevirostrum) is listed as anendangered species under the Endangered SpeciesAct in the United States. To assess populationstructure in this species as a guide toeffective management, tissue samples werecollected from adult specimens (N = 198) fromfive river systems in the southeastern U.S.,and augmented with a sample from New Brunswick,Canada (N = 13), the extreme northern end ofthe species' range. Comparisons of mtDNAcontrol region sequences reveal a shallow genegenealogy and modest, but significant,population structuring (_st = 4.3%or _st = 17.7% when Canadian samplesare included). Populations inhabiting riversystems in the southeastern U.S. are closelyrelated, a pattern consistent with more recentdivergences along evolutionary timeframes. Haplotype diversity is moderate to high in mostdrainages (h = 0.383–1.000), exceptfor the Savannah and Edisto rivers, indicatingthat historical levels of mtDNA diversity mightbe largely intact outside of these drainages. Low mtDNA diversity in the Savannah andneighboring Edisto drainages might stem from anexperimental stocking effort during 1984–1992 that depressed overall genetic diversityin the Savannah and established or augmentedthe Edisto River population with a relativelylimited number of matrilines.     

Delineation of discrete population segments of shortnose sturgeon <Emphasis Type="Italic">Acipenser brevirostrum</Emphasis> based on mitochondrial DNA control region sequence analysis

Shortnose sturgeon Acipenser brevirostrum is federally listed as ‘‘an endangered species threatened with extinction’’ in the U.S. but its listing status is currently under review. As part of this process, the U.S. National Marine Fisheries Service will determine if shortnose sturgeon are divided into Distinct Population Segments (DPS) across its distribution. In this regard, we sought to determine if shortnose sturgeon occur in genetically “discrete population segments,” and if so, the boundaries of each. We used mitochondrial DNA (mtDNA) control region sequence analysis to assess the genetic discreteness of 14 of 19 river populations that were recommended as DPS in the 1998 Final Recovery Plan for Shortnose Sturgeon. Nine of the 14 proposed DPS proved significantly discrete (P < 0.05 after Bonferoni correction) from both of their bracketing populations, the exceptions being those in the Penobscot River, Chesapeake Bay, Cooper River, and Ogeechee River (our sample from the Cape Fear River was insufficient to statistically analyze). Haplotype frequencies in the newly “rediscovered” Penobscot River collection were almost identical to those in the proximal Kennebec River system. Genetic data in combination with tagging results suggest that shortnose sturgeon in the Penobscot River are probably migrants from the Kennebec. Likewise, shortnose sturgeon found today within the Chesapeake Bay appear to be migrants from the Delaware River. While haplotype frequencies in the remnant Santee River population in Lake Marion differed significantly from those in nearby Winyah Bay, they did not differ significantly from those in the Cooper River. This suggests that the Cooper River harbors descendants of the Santee River population that are unable to access their historical spawning locales. The Ogeechee River collection was not genetically distinct from that in the nearby Savannah River, suggesting that it may host descendants of hatchery-reared individuals of Savannah River ancestry. Our genetic results indicate that most, but not all, rivers with shortnose sturgeon host genetically discrete populations, constituting important information in the consideration of DPS designations. However, shortnose sturgeon migrations through coastal waters to proximal rivers and release of hatchery-reared fish may confound results from genetic studies such as ours and lead to the possible misidentification of discrete population segments.     

Population structure and gene flow in the Sheepnose mussel (Plethobasus cyphyus) and their implications for conservation

North American freshwater mussel species have experienced substantial range fragmentation and population reductions. These impacts have the potential to reduce genetic connectivity among populations and increase the risk of losing genetic diversity. Thirteen microsatellite loci and an 883 bp fragment of the mitochondrial ND1 gene were used to assess genetic diversity, population structure, contemporary migration rates, and population size changes across the range of the Sheepnose mussel (Plethobasus cyphyus). Population structure analyses reveal five populations, three in the Upper Mississippi River Basin and two in the Ohio River Basin. Sampling locations exhibit a high degree of genetic diversity and contemporary migration estimates indicate that migration within river basins is occurring, although at low rates, but there is no migration is occurring between the Ohio and Mississippi river basins. No evidence of bottlenecks was detected, and almost all locations exhibited the signature of population expansion. Our results indicate that although anthropogenic activity has altered the landscape across the range of the Sheepnose, these activities have yet to be reflected in losses of genetic diversity. Efforts to conserve Sheepnose populations should focus on maintaining existing habitats and fostering genetic connectivity between extant demes to conserve remaining genetic diversity for future viable populations.     

Genetic discrimination of middle Mississippi River <Emphasis Type="Italic">Scaphirhynchus</Emphasis> sturgeon into pallid,shovelnose, and putative hybrids with multiple microsatellite loci

The pallid sturgeon (Scaphirhynchus albus), which is protected under the US endangered species act, and shovelnose sturgeon (S. platorhynchus), which is legally harvested in some locations, are sympatric throughout the range of pallid sturgeon. There is considerable morphological overlap between the species making discrimination problematic. The inability to reliably differentiate between species across all life stages has hampered pallid sturgeon recovery efforts. Furthermore, the two species are believed to hybridize. This study used allele frequency data at multiple microsatellite loci to perform Bayesian and likelihood-based assignment testing and morphological measures and meristics to discriminate pallid, shovelnose, and putative hybrid sturgeons from the middle Mississippi River. Bayesian model-based clustering of the genetic data indicated that two natural genetic units occur in the region. These units correspond to morphologically identified pallid and shovelnose sturgeon. Some individuals were morphologically intermediate and many of these failed to strongly assign genetically as either pallid or shovelnose sturgeon, suggesting they may be hybrids. These data indicate that pallid sturgeon and shovelnose sturgeon are genetically distinct in the middle Mississippi River (F _ST = 0.036, P < 0.0001) and suggest that hybridization between pallid sturgeon and shovelnose sturgeon has occurred in this region with genetic distance estimates indicating the greatest distance is between pallid and shovelnose sturgeon, while hybrid sturgeon are intermediate but closer to shovelnose. This study demonstrates that assignment testing with multiple microsatellite markers can be successful at discriminating pallid sturgeon and shovelnose sturgeon, providing a valuable resource for pallid sturgeon recovery and conservation.

Genetic assessment of lake sturgeon (<Emphasis Type="Italic">Acipenser fulvescens</Emphasis>) population structure in the Ottawa River

Lake sturgeon (Acipenser fulvescens) are of conservation concern throughout their range. Many populations are dependent on fluvial habitats which have been increasingly impacted and fragmented by dams and human development. Although lake sturgeon were once abundant in the Ottawa River and its tributaries, historical commercial harvests and other anthropogenic factors caused severe declines and low contemporary numbers in lake sturgeon populations. Contemporary habitat fragmentation by dams may be increasing isolation among habitat patches and local rates of decline, raising concerns for persistence of local populations. We used microsatellite DNA markers to assess population structure and diversity of lake sturgeon in the Ottawa River, and analyzed samples from 10 sites that represent more than 500 km of riverine habitat. To test for evidence of anthropogenic fragmentation, patterns of genetic diversity and connectivity within and among river segments were tested for concordance with geographic location, separation by distance and obstacles to migration, considering both natural and artificial barriers as well as barrier age. Despite extensive habitat fragmentation throughout the Ottawa River, statistical analyses failed to refute panmixia of lake sturgeon in this system. Although the long generation time of lake sturgeon appears to have effectively guarded against the negative genetic impacts of habitat fragmentation and loss so far, evidence from demographic studies indicates that restoring connectivity among habitats is needed for the long-term conservation and management of this species throughout this river system.     

Natural stranding of Atlantic sturgeon (Acipenser oxyrinchus Mitchill, 1815) in Scot's Bay,Bay of Fundy,Nova Scotia,from populations of concern in the United States and Canada

Natural mortality of Atlantic sturgeon (Acipenser oxyrinchus) has been determined to be low (M = 0.07). Reported herein is the mortality by beach stranding of 11 Atlantic sturgeon in Scot's Bay, part of the inner Bay of Fundy in Nova Scotia, Canada on 22 June 2014. Genetic analyses, histological analysis and age determination were performed to determine origin, maturity stage and age of the stranded Atlantic sturgeon. Microsatellite and mitochondrial DNA analyses indicated that four of the Atlantic sturgeon (2 males and 2 females) were from the Saint John River, NB population, which was designated as threatened by the Committee on the Status of Endangered Wildlife in Canada. Seven Atlantic sturgeon (1 male, 5 females, 1 unknown) were from the Kennebec River, Maine population, that was listed as threatened under the Endangered Species Act in the U. S. Ageing of A. oxyrinchus Atlantic sturgeon by pectoral fin spine analysis determined that the mean age of the individuals from the Saint John River (x? = 24.25 years, SD = 5.0) and the Kennebec River (x? = 22.7 years, SD = 3.5) were not significantly different. This is the first report of a stranding event of Atlantic sturgeon, and describes a source of natural mortality affecting populations of concern in both Canada and the U. S.     

Genetic evidence for hybridization of pallid and shovelnose sturgeon

To determine the genetic origin of individual sturgeon that are morphologically intermediate to pallid (Scaphirhynchus albus) and shovelnose (Scaphirhynchus platorhynchus) sturgeon, we combined previously published mitochondrial DNA (mtDNA) and microsatellite data with additional microsatellite data. Two sympatric populations of pallid and shovelnose sturgeon from the upper Missouri River and a sympatric population containing pallid, shovelnose, and putative pallid-shovelnose hybrids from the Atchafalaya River were analyzed using an index of hybridization and a principle components analysis of individual relatedness scores. The addition of new microsatellite data improved our ability to genetically differentiate individual pallid and shovelnose sturgeon collected in both areas. Our methods distinguished morphologically intermediate Atchafalaya River sturgeon, which appear to be genetically intermediate between pallid and shovelnose sturgeon. The results support a hybrid origin for morphologically intermediate individuals, although it is unclear whether they are all first-generation hybrids or if some are the result of subsequent backcrossing with the more common shovelnose sturgeon.     

Extremely low genetic diversity and weak population differentiation in the endangered Colombian river turtle Podocnemis lewyana (Testudines: Podocnemididae)

Podocnemis lewyana is an endangered endemic river turtle of Colombia. Using ten unlinked polymorphic microsatellite loci and a 691-bp-long DNA fragment corresponding to the more variable portion of the mitochondrial control region, we investigated genetic diversity and population structure throughout its range. Both neutral markers showed extremely low diversity and weak population differentiation. Our data indicate that the genetic history of P. lewyana has been impacted by multiple bottlenecks and population expansion since the Pleistocene. The observed differentiation pattern is most likely the result of historically low genetic variation resulting from restricted geographic range and aggravated by recent anthropogenically induced bottlenecks. Based on slight differences in allele frequencies among populations, we suggest that three regions should be treated as demographically independent Management Units in order to preserve maximal genetic diversity: (1) the Upper Magdalena River Basin, (2) the Lower Magdalena + Lower Cauca + San Jorge River Basins, and (3) the Sinú River Basin. Among the Management Units, only low to moderate levels of gene flow were detected; these are largely unidirectional from Management Units 1 and 3 into Management Unit 2.     

Variation in the <Emphasis Type="Italic">COI</Emphasis> gene of the freshwater pearl mussel <Emphasis Type="Italic">Margaritifera margaritifera</Emphasis> from River Vuokkijoki

The freshwater pearl mussel Margaritifera margaritifera L. is one of the most endangered freshwater mussels in the world. Effective conservation of threatened species requires not only ecological, but also genetic information from the target species and populations. Since low genetic diversity can reduce the ability of a species to adapt to environmental changes, maintaining genetic diversity has been identified as one of the key elements in successful conservation programs. We examined genetic variation of the freshwater pearl mussel from the River Vuokkijoki, Karelia, Russia. We sequenced a fragment of the cytochrome c oxidase subunit I gene (COI) from 22 individuals and compared the data to 32 previously published COI sequences available in GenBank. We identified 10 different COI haplotypes in the sequenced samples, three of which had not been previously reported. Our results show that the River Vuokkijoki has high genetic diversity and suggest that the colonization of this northern freshwater pearl mussel population might have occurred from multiple and even distant refugia. Therefore, the freshwater pearl mussel population of the River Vuokkijoki is valuable for the conservation of the whole species.     

A reintroduced lake sturgeon population comes of age: A genetic evaluation of stocking success in the St. Louis River

Lake sturgeon (Acipenser fulvescens) have experienced significant declines throughout the Great Lakes, leading to stocking efforts at some locations to reestablish extirpated populations. Given the late sexual maturity of the species, assessment of stocking program success is often delayed. Lake sturgeon were extirpated from the St. Louis River in western Lake Superior. Stocking began in 1983 and continued until 1994, using the Wolf River (Lake Winnebago) in the Lake Michigan basin as the source. Stocking resumed from 1998 to 2000, using the Sturgeon River in Lake Superior as the source. Our objectives were to (a) determine the movement patterns of stocked Wolf River sturgeon, (b) determine whether stocked individuals are migrating into natural spawning populations during the spawning season, (c) identify the origins of individuals captured in the St. Louis River, and (d) assess the genetic diversity of the reintroduced St. Louis River population. All collected samples were analyzed using 12 microsatellite loci, followed by genetic assignment testing to achieve the first three objectives. Genetic diversity was compared to natural spawning populations in Lake Superior. The highest proportion of stocked Wolf River lake sturgeon was detected in western Lake Superior, close to the stocking site. However, individuals were detected throughout Lake Superior. Wolf River individuals were detected in most of the spawning populations in Lake Superior, with the greatest number in the Sturgeon River and the Goulais River. The majority of individuals captured in the St. Louis River were of stocked origin (88.1%), with 73.5% from the Wolf River and 14.6% from the Sturgeon River. These observed proportions differed from the expected proportions based on the number of sturgeon released from each source (χ² = 55.37, p < 0.00001), with a higher representation of Sturgeon River individuals. Evidence of natural recolonization in the St. Louis River was detected from Lake Huron and Goulais River individuals. Genetic diversity of the St. Louis River population was comparable to levels observed in the remnant natural populations in Lake Superior. However, the effective population size of the St. Louis River was small (N_e = 38.1) and average relatedness among individuals was relatively high (r = 0.151). Monitoring of movement of stocked Wolf River sturgeon throughout Lake Superior should continue, with careful attention to the potential for outbreeding depression in remnant populations. Genetic diversity of the St. Louis River population should also continue to be monitored to see if it improves with increased natural reproduction.     

Conservation genetics of redside dace (<Emphasis Type="Italic">Clinostomus elongatus</Emphasis>): phylogeography and contemporary spatial structure

Redside dace Clinostomus elongatus (Teleostei: Cyprinidae) is a species of conservation concern that is declining throughout its range as a result of habitat fragmentation, degradation and loss. We characterized the genetic structure and diversity of redside dace populations across the species range using mitochondrial and microsatellite data to inform conservation efforts and assess how historical and recent events have shaped genetic structure and diversity within and among populations. Phylogeographic structure among 28 redside dace populations throughout southern Ontario (Canada) and the United States was assessed by sequence analysis of the mitochondrial cytochrome b and ATPase 6 and 8 genes. Populations were also genotyped using ten microsatellite loci to examine genetic diversity within and among populations as well as contemporary spatial structuring. Mitochondrial DNA sequence data revealed three geographically distinct lineages, which were highly concordant with groupings identified by microsatellite analysis. The combined genetic data refute published glacial refugia hypotheses of a single Mississippian refugium or of two lineages associated with Mississippian and Atlantic refugia. Secondary contact between the two eastern groups was documented in the Allegheny River drainage and tributaries to Lake Ontario. With the exception of several allopatric populations within the Allegheny watershed, high genetic structuring among populations suggests their isolation, indicating that recovery efforts should be population-based.     

Characterisation of 30 microsatellite loci for the Tehuelche scallop,Aequipecten tehuelchus (d’Orbigny, 1842) and their use for estimating demographic parameters relevant to fisheries management

Aequipecten techuelchus is an endemic scallop of the Argentine biogeographic province in the southwest Atlantic Ocean which supports a commercial fishery that has presented strong fluctuations since the 1960s. It is unclear if distinct localities constitute a single panmictic population. We used next-generation sequencing to obtain microsatellite loci that could be used to evaluate genetic diversity and differentiation among populations. We developed 30 polymorphic microsatellite loci, of which 13 meet the standard criteria required for population genetic analyses, including Hardy-Weinberg equilibrium, not being linked and with a low frequency of null alleles. The described microsatellite loci were used to estimate relatedness and effective population size, and to test for recent and historic population bottlenecks. Our results suggest that the population of the Tehuelche scallop from San Román, Gulf of San José, Patagonia shows a relatively large effective population size, high levels of genetic polymorphism, low levels of inbreeding and no signs of recent or historic drastic population reductions. These preliminary results should be confirmed with larger sample sizes and the inclusion of other nearby populations.     

Stock structure of pallid sturgeon analyzed with microsatellite loci

Recovery efforts for the endangered pallid sturgeon (Scaphirhynchus albus) include supplementation of wild stocks with hatchery reared progeny. Identifying the extent of genetic stock structure, which has previously been detected in samples from the range extremes, will help to determine whether stock transfers might be harmful. DNA microsatellite genotypes were screened in pallid sturgeon from the upper Missouri River, lower Missouri River, middle Mississippi River and Atchafalaya River and analyzed using a combination of Bayesian model‐based and more traditional F‐statistic based methods to characterize genetic differentiation. Scaphirhynchus specimens were collected by researchers active in the recovery effort and genotypes were screened at 16 microsatellite loci. Because there is considerable genetic and morphological overlap between pallid sturgeon, shovelnose sturgeon, and their hybrids, a combination of morphological and genetic techniques were used to eliminate shovelnose and possible hybrids from the sample. Genetic differentiation was detected among samples (overall θ = 0.050, P = 0.001). Pairwise θ, genetic distances, and Bayesian assignment testing reveal that pallid sturgeon from the upper Missouri River are the most distinct group with pairwise comparisons of pallid sturgeon among all the remaining samples exhibiting lower θ values, higher genetic distances, and self assignment scores. Our results indicate that using local broodstock, when available, should be used for pallid sturgeon propagation. If local broodstock are not available, geographically proximate individuals would limit genetic differences between native and stocked individuals.     

Atlantic and shortnose sturgeons of the Hudson River: common and divergent life history attributes

The Hudson River estuary supports substantial number of Atlantic sturgeon, Acipenser oxyrinchus, and shortnose sturgeon, Acipenser brevirostrum. Both species have complex life cycles that have been studied sporadically in the past 50 years. The life cycle of the shortnose sturgeon may be divided into four life intervals: non-spawning adults, spawning adults, eggs and larvae, and juveniles. The life cycle of the Atlantic sturgeon is reviewed in six intervals: non-spawning adults, female spawners, male spawners, eggs and larvae, early juveniles, and late juveniles. Both species are long-lived, mature at advanced age, have rapid and similar growth during the first few years of life, feed on generally similar taxa, use deep channel habitats for all life intervals, and have complex migratory patterns with distinct, seasonal, concentration areas. Atlantic and shortnose sturgeons differ, however, in ages and sizes at maturity, maximum size, timing and location of spawning, migratory behaviors, and management. Use of marine habitats and long-distance coastal migrations are restricted to Atlantic sturgeon, but some evidence indicates that large Atlantic sturgeon juveniles reside in riverine habitats along the Atlantic coast during warm months. Movements and habitat use by both sturgeons in the Hudson River estuary contrasts with the spatial segregation of the species reported in other river systems. Juvenile shortnose sturgeon and early juvenile Atlantic sturgeon have almost the same distributions in the Hudson River estuary during all seasons. During this period of co-occurrence, both species are very similar in size, grow at about the same rate, feed on similar foods, and share deep, channel habitats. Adult shortnose sturgeon distribution overlaps with the distribution of juvenile Atlantic sturgeon, and the latter commence river emigration at a size comparable to co-occurring adult shortnose sturgeon. Life history information on the Hudson River sturgeons substantiates the need to carefully conserve these species because of vulnerability to exploitation and habitat disruption.     

Population structure and genetic diversity of black redhorse (Moxostoma duquesnei) in a highly fragmented watershed

Dams have the potential to affect population size and connectivity, reduce genetic diversity, and increase genetic differences among isolated riverine fish populations. Previous research has reported adverse effects on the distribution and demographics of black redhorse (Moxostoma duquesnei), a threatened fish species in Canada. However, effects on genetic diversity and population structure are unknown. We used microsatellite DNA markers to assess the number of genetic populations in the Grand River (Ontario) and to test whether dams have resulted in a loss of genetic diversity and increased genetic differentiation among populations. Three hundred and seventy-seven individuals from eight Grand River sites were genotyped at eight microsatellite loci. Measures of genetic diversity were moderately high and not significantly different among populations; strong evidence of recent population bottlenecks was not detected. Pairwise F_ST and exact tests identified weak (global F_ST = 0.011) but statistically significant population structure, although little population structuring was detected using either genetic distances or an individual-based clustering method. Neither geographic distance nor the number of intervening dams were correlated with pairwise differences among populations. Tests for regional equilibrium indicate that Grand River populations were either in equilibrium between gene flow and genetic drift or that gene flow is more influential than drift. While studies on other species have identified strong dam-related effects on genetic diversity and population structure, this study suggests that barrier permeability, river fragment length and the ecological characteristics of affected species can counterbalance dam-related effects.     

Molecular phylogeography and population evolution analysis of <Emphasis Type="Italic">Citrus ichangensis</Emphasis> (Rutaceae)

Ichang papeda (Citrus ichangensis), a wild and endemic perennial plant in Rutaceae, is characterized by the existence of wild and natural populations in southwestern and middle-west China. We analyzed a total of 231 individuals across 16 natural populations using chloroplast SSR markers, nuclear SSR markers, and single-copy nuclear genes. Standard population genetic analyses as well as Bayesian and maximum likelihood models were used to clarify the genetic diversity, population differentiation, barriers to gene flow, bottleneck events, isolation by distance, history migration, demographic history among populations, and phylogeny evolution. The chloroplast and nuclear genome analyses revealed a low level of genetic diversity in C. ichangensis. Clear signals of recent bottlenecks and strong patterns of isolation by distance were detected among different subpopulations, indicating a low extent of historical gene flow for this species and that genetic drift would occur after population differentiation. Bayesian clustering analyses revealed a clear pattern of genetic structure, with one cluster spanning the potential refugia in Wuling Mountains and Ta-pa Mountains, and other two clusters covering a more limited distribution range. The demographic history also supported the scenario that two isolated clusters originated in parallel from the genetic diversity center. Taxonomically, Ichang papeda may be a member of subgenus Citrus. Owing to the complicated topography, the mountainous regions and the Yangtze River have provided long-term stable habitats for C. ichangensis and acted as main barriers for its expansion, which might facilitate the process of speciation. Statistical population models and genetic data indicated strong genetic structure in C. ichangensis, which might result from the restricted gene flow, genetic drift, and population bottlenecks.     

High migration rates shape the postglacial history of amphi‐Atlantic bryophytes

Paleontological evidence and current patterns of angiosperm species richness suggest that European biota experienced more severe bottlenecks than North American ones during the last glacial maximum. How well this pattern fits other plant species is less clear. Bryophytes offer a unique opportunity to contrast the impact of the last glacial maximum in North America and Europe because about 60% of the European bryoflora is shared with North America. Here, we use population genetic analyses based on approximate Bayesian computation on eight amphi‐Atlantic species to test the hypothesis that North American populations were less impacted by the last glacial maximum, exhibiting higher levels of genetic diversity than European ones and ultimately serving as a refugium for the postglacial recolonization of Europe. In contrast with this hypothesis, the best‐fit demographic model involved similar patterns of population size contractions, comparable levels of genetic diversity and balanced migration rates between European and North American populations. Our results thus suggest that bryophytes have experienced comparable demographic glacial histories on both sides of the Atlantic. Although a weak, but significant genetic structure was systematically recovered between European and North American populations, evidence for migration from and towards both continents suggests that amphi‐Atlantic bryophyte population may function as a metapopulation network. Reconstructing the biogeographic history of either North American or European bryophyte populations therefore requires a large, trans‐Atlantic geographic framework.