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1.
《Structure (London, England : 1993)》2022,30(7):947-961.e6
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Carola Schäfer Nicholas Dambrauskas Laura M. Reynolds Olesya Trakhimets Andrew Raappana Erika L. Flannery Wanlapa Roobsoong Jetsumon Sattabongkot Sebastian A. Mikolajczak Stefan H.I. Kappe D. Noah Sather 《Cell host & microbe》2021,29(5):752-756.e4
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Jos C. Clemente Lakshmanan Govindasamy Amrita Madabushi S. Zoë Fisher Rebecca E. Moose Charles A. Yowell Koushi Hidaka Tooru Kimura Yoshio Hayashi Yoshiaki Kiso Mavis Agbandje‐McKenna John B. Dame Ben M. Dunn Robert McKenna 《Acta Crystallographica. Section D, Structural Biology》2006,62(3):246-252
The malarial parasite continues to be one of the leading causes of death in many developing countries. With the development of resistance to the currently available treatments, the discovery of new therapeutics is imperative. Currently, the plasmepsin enzymes found in the food vacuole of the parasite are a chief target for drug development. Allophenylnorstatine‐based compounds originally designed to inhibit HIV‐1 protease have shown efficacy against all four plasmepsin enzymes found in the food vacuole of Plasmodium falciparum. In this study, the first crystal structure of P. malariae plasmepsin 4 (PmPM4) bound to the allophenylnorstatine‐based compound KNI‐764 is described at 3.3 Å resolution. The PmPM4–inhibitor complex crystallized in the orthorhombic space group P21212, with unit‐cell parameters a = 95.9, b = 112.6, c = 90.4 Å, with two molecules in the asymmetric unit related by a non‐crystallographic symmetry operator. The structure was refined to a final R factor of 24.7%. The complex showed the inhibitor in an unexpected binding orientation with allophenylnorstatine occupying the S1′ pocket. The P2 group was found outside the S2 pocket, wedged between the flap and a juxtaposed loop. Inhibition analysis of PmPM4 also suggests the potential for allophenylnorstatine‐based compounds to be effective against all species of malaria infecting humans and for the future development of a broad‐based inhibitor. 相似文献
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Bernstein NK Cherney MM Yowell CA Dame JB James MN 《Journal of molecular biology》2003,329(3):505-524
The malarial aspartic proteinases (plasmepsins) have been discovered in several species of Plasmodium, including all four of the human malarial pathogens. In P.falciparum, plasmepsins I, II, IV and HAP have been directly implicated in hemoglobin degradation during malaria infection, and are now considered targets for anti-malarial drug design. The plasmepsins are produced from inactive zymogens, proplasmepsins, having unusually long N-terminal prosegments of more than 120 amino acids. Structural and biochemical evidence suggests that the conversion process of proplasmepsins to plasmepsins differs substantially from the gastric and plant aspartic proteinases. Instead of blocking substrate access to a pre-formed active site, the prosegment enforces a conformation in which proplasmepsin cannot form a functional active site. We have determined crystal structures of plasmepsin and proplasmepsin from P.vivax. The three-dimensional structure of P.vivax plasmepsin is typical of the monomeric aspartic proteinases, and the structure of P.vivax proplasmepsin is similar to that of P.falciparum proplasmepsin II. A dramatic refolding of the mature N terminus and a large (18 degrees ) reorientation of the N-domain between P.vivax proplasmepsin and plasmepsin results in a severe distortion of the active site region of the zymogen relative to that of the mature enzyme. The present structures confirm that the mode of inactivation observed originally in P.falciparum proplasmepsin II, i.e. an incompletely formed active site, is a true structural feature and likely represents the general mode of inactivation of the related proplasmepsins. 相似文献
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Rosario Recacha Janis Leitans Inara Akopjana Lilija Aprupe Peteris Trapencieris Kristaps Jaudzems Aigars Jirgensons Kaspars Tars 《Acta Crystallographica. Section F, Structural Biology Communications》2015,71(12):1531-1539
Plasmepsin II (PMII) is one of the ten plasmepsins (PMs) identified in the genome of Plasmodium falciparum, the causative agent of the most severe and deadliest form of malaria. Owing to the emergence of P. falciparum strains that are resistant to current antimalarial agents such as chloroquine and sulfadoxine/pyrimethamine, there is a constant pressure to find new and lasting chemotherapeutic drug therapies. Previously, the crystal structure of PMII in complex with NU655, a potent antimalarial hydroxyethylamine‐based inhibitor, and the design of new compounds based on it have been reported. In the current study, two of these newly designed hydroxyethylamine‐based inhibitors, PG418 and PG394, were cocrystallized with PMII and their structures were solved, analyzed and compared with that of the PMII–NU655 complex. Structural analysis of the PMII–PG418 complex revealed that the flap loop can adopt a fully closed conformation, stabilized by interactions with the inhibitor, and a fully open conformation, causing an overall expansion in the active‐site cavity, which in turn causes unstable binding of the inhibitor. PG418 also stabilizes the flexible loop Gln275–Met286 of another monomer in the asymmetric unit of PMII, which is disordered in the PMII–NU655 complex structure. The crystal structure of PMII in complex with the inhibitor PG418 demonstrates the conformational flexibility of the active‐site cavity of the plasmepsins. The interactions of the different moieties in the P1′ position of PG418 and PG394 with Thr217 have to be taken into account in the design of new potent plasmepsin inhibitors. 相似文献
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《Journal of enzyme inhibition and medicinal chemistry》2013,28(5):673-678
Virtual screening of an in-house virtual library of synthetic compounds using FlexX, followed by enzyme inhibition, identified hydrazide and hydrazine derivatives as novel aspartic protease inhibitors. These compounds inhibited human cathepsin D and Plasmodium falciparum plasmepsin-II with low micromolar concentrations (IC50?=?1-2.5 μM). Modelling studies with plasmepsin-II predicted binding of ligands at the centre of the extended substrate-binding cleft, where hydrazide/hydrazine parts of the inhibitors acted as the transition state mimic by forming electrostatic interactions with catalytic aspartates. 相似文献
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Mariana Concei??o Souza Tatiana Almeida Padua Natalia Domingos Torres Maria Fernanda de Souza Costa Victor Facchinetti Claudia Regina Brand?o Gomes Marcus Vinícius Nora Souza Maria das Gra?as Henriques 《Memórias do Instituto Oswaldo Cruz》2015,110(4):560-565
A rapid decrease in parasitaemia remains the major goal for new antimalarial drugs
and thus, in vivo models must provide precise results concerning parasitaemia
modulation. Hydroxyethylamine comprise an important group of alkanolamine compounds
that exhibit pharmacological properties as proteases inhibitors that has already been
proposed as a new class of antimalarial drugs. Herein, it was tested the antimalarial
property of new nine different hydroxyethylamine derivatives using the green
fluorescent protein (GFP)-expressing Plasmodium berghei strain. By
comparing flow cytometry and microscopic analysis to evaluate parasitaemia
recrudescence, it was observed that flow cytometry was a more sensitive methodology.
The nine hydroxyethylamine derivatives were obtained by inserting one of the
following radical in the para position: H, 4Cl, 4-Br, 4-F, 4-CH3,
4-OCH3, 4-NO2, 4-NH2 and 3-Br. The antimalarial test showed that the compound that
received the methyl group (4-CH3) inhibited 70% of parasite growth. Our results
suggest that GFP-transfected P. berghei is a useful tool to study the recrudescence
of novel antimalarial drugs through parasitaemia examination by flow cytometry.
Furthermore, it was demonstrated that the insertion of a methyl group at the
para position of the sulfonamide ring appears to be critical for
the antimalarial activity of this class of compounds. 相似文献
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L. D. Rumsh A. G. Mikhailova I. V. Mikhura I. A. Prudchenko L. D. Chikin I. I. Mikhaleva E. N. Kaliberda N. I. Dergousova E. E. Mel’nikov A. A. Formanovskii 《Russian Journal of Bioorganic Chemistry》2008,34(6):660-667
A number of new inhibitors of plasmepsin II (PlmII) Plasmodium falciparum, which was one of the key factors of survival of malarial parasite, was synthesized. The inhibitors were analogues of pepstatin with different substitutions for the alanine residue. Effects of the inhibitors on human PlmII and cathepsin D were studied. Inhibition of PlmII by the substrate was found. This discovery required modification of the Henderson method for determination of inhibition constants. Two synthesized inhibitors were shown to exhibit a pronounced selectivity to PlmII (K i = 5.5 and 5 nM) in comparison with that of cathepsin D (K i = 230 and 3000 nM, respectively). 相似文献
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Aiko Kiso Koushi Hidaka Tooru Kimura Yoshio Hayashi Azin Nezami Ernesto Freire Yoshiaki Kiso 《Journal of peptide science》2004,10(11):641-647
Plasmepsin (Plm) has been identified as an important target for the development of new antimalarial drugs, since its inhibition leads to the starvation of Plasmodium falciparum. A series of substrate-based dipeptide-type Plm II inhibitors containing the hydroxymethylcarbonyl isostere as a transition-state mimic were synthesized. The general design principle was provision of a conformationally restrained hydroxyl group (corresponding to the set residue at the P2' position in native substrates) and a bulky unit to fit the S2' pocket. 相似文献
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Rat studies suggest that artemisinin-induced decreases in reticulocyte count are a marker for embryotoxicity (in one study, r = 0.82; p < 0.05). In clinical studies, therapeutic doses of artemisinins induced decreases in reticulocyte count that were larger in five of six groups of healthy volunteers (mean decreases of 47-75%) than in 12 groups of patients with malaria (mean decreases of 0-34% and incidences of low reticulocyte count of 0.6-18%). Malaria causes hypoferremia and drug concentrates in infected red cells so, among the explanations for the lesser decreases in patients, is that malaria protects against artemisinin-induced decreases in reticulocyte count by reducing the target tissue levels of active drug and/or ferrous iron which activates the drug to toxic free radicals. The disease could also protect against embryotoxicity in which case pregnant women without malaria would be at greater risk of artemisinin-induced embryotoxicity. Malaria protection against artesunate toxicity has been observed in rats. No artemisinin-induced embryotoxicity has been identified in limited numbers of women with confirmed malaria in the first trimester. However, in large parts of tropical Africa, malaria treatment is based on fever rather than confirmation of parasitemia and many pregnant women without malaria are exposed to antimalarials. No clinical studies have been conducted on uninfected women for whom pregnancy was identified and then an artemisinin was administered subsequently. Testing in rats and/or humans is needed to determine if malaria protects against reticulocytopenia and embryotoxicity and whether the parasite is a more or less sensitive target than the embryo and reticulocyte. 相似文献
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Sergey Lunev Soraya S. Bosch Fernando de Assis Batista Carsten Wrenger Matthew R. Groves 《Acta Crystallographica. Section F, Structural Biology Communications》2016,72(7):523-533
The de novo pyrimidine‐biosynthesis pathway of Plasmodium falciparum is a promising target for antimalarial drug discovery. The parasite requires a supply of purines and pyrimidines for growth and proliferation and is unable to take up pyrimidines from the host. Direct (or indirect) inhibition of de novo pyrimidine biosynthesis via dihydroorotate dehydrogenase (PfDHODH), the fourth enzyme of the pathway, has already been shown to be lethal to the parasite. In the second step of the plasmodial pyrimidine‐synthesis pathway, aspartate and carbamoyl phosphate are condensed to N‐carbamoyl‐l ‐aspartate and inorganic phosphate by aspartate transcarbamoylase (PfATC). In this paper, the 2.5 Å resolution crystal structure of PfATC is reported. The space group of the PfATC crystals was determined to be monoclinic P21, with unit‐cell parameters a = 87.0, b = 103.8, c = 87.1 Å, α = 90.0, β = 117.7, γ = 90.0°. The presented PfATC model shares a high degree of homology with the catalytic domain of Escherichia coli ATC. There is as yet no evidence of the existence of a regulatory domain in PfATC. Similarly to E. coli ATC, PfATC was modelled as a homotrimer in which each of the three active sites is formed at the oligomeric interface. Each active site comprises residues from two adjacent subunits in the trimer with a high degree of evolutional conservation. Here, the activity loss owing to mutagenesis of the key active‐site residues is also described. 相似文献
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J. C. Pizarro V. Chitarra C. Calvet D. Verger G. A. Bentley 《Acta Crystallographica. Section D, Structural Biology》2002,58(7):1246-1248
The 11 kDa C‐terminal fragment of the proteolyticly matured surface antigen, PfMSP1, from Plasmodium falciparum is a promising malaria vaccine candidate. The soluble recombinant form of this naturally occurring fragment has been crystallized as a complex with the Fab of a specific murine monoclonal antibody. The crystals belong to the space group P21, with unit‐cell parameters a = 51.8, b = 213.5,c = 60.0 Å, β =101.0°, and with Z = 4. Diffraction data have been measured to 2.9 Å resolution and a preliminary model of the complex has been determined by molecular replacement. The epitope recognised by G17.12 is located on the N‐terminal EGF‐like domain of the antigen. 相似文献
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A multifunctional serine protease primes the malaria parasite for red blood cell invasion 总被引:1,自引:0,他引:1
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Konstantinos Koussis Chrislaine Withers-Martinez Sharon Yeoh Matthew Child Fiona Hackett Ellen Knuepfer Luiz Juliano Ute Woehlbier Hermann Bujard Michael J Blackman 《The EMBO journal》2009,28(6):725-735
The malaria parasite Plasmodium falciparum replicates within an intraerythrocytic parasitophorous vacuole (PV). Rupture of the host cell allows release (egress) of daughter merozoites, which invade fresh erythrocytes. We previously showed that a subtilisin-like protease called PfSUB1 regulates egress by being discharged into the PV in the final stages of merozoite development to proteolytically modify the SERA family of papain-like proteins. Here, we report that PfSUB1 has a further role in ‘priming' the merozoite prior to invasion. The major protein complex on the merozoite surface comprises three proteins called merozoite surface protein 1 (MSP1), MSP6 and MSP7. We show that just before egress, all undergo proteolytic maturation by PfSUB1. Inhibition of PfSUB1 activity results in the accumulation of unprocessed MSPs on the merozoite surface, and erythrocyte invasion is significantly reduced. We propose that PfSUB1 is a multifunctional processing protease with an essential role in both egress of the malaria merozoite and remodelling of its surface in preparation for erythrocyte invasion. 相似文献
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The asexual erythrocytic stage of Plasmodium falciparum was grown in culture in the presence or absence of glycoconjugate polyanions of varying structure, size and substitutions. Heparin, dextran sulfate, fucoidan and pentosan polysulfate had antimalarial IC50 values between one and 11 μg ml−1. Constituent heparin disaccharides were ineffective against the malaria parasite and desulfation from either the O- or N-substitution sites of heparin or reduction of the uronic acid carboxyl group neutralized the antimalarial response to varying degrees. Immobilization of heparin onto agarose beads still permitted antimalarial activity suggesting that parasite uptake of the glycoconjugate is not required for inhibition. Accordingly, it is concluded that invasion of free parasites into the erythrocytes was inhibited rather than parasite maturation within the red cell. Merozoite surface antigen-1 was apparently prevented from binding to human erythrocytes in the presence of highly sulfated polyanions and, in a dose-dependent fashion, heparin. Abbreviations: MSA-1, merozoite surface antigen-1 This revised version was published online in November 2006 with corrections to the Cover Date. 相似文献
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恶性疟原虫裂殖子表面蛋白1是当今疟疾疫苗主要的候选抗原。由于天然MSP1基因AT含量异常高(为74%),使得克隆全长天然基因无法实现。本文已全合成了msp1基因(4940bp),解决了该天然基因在异源系统中不稳定的问题。为制备大量msp1重组蛋白进行疫苗有效性试验,本研究建立了msp1基因在毕赤酵母中的表达,将合成的msp1基因克隆到毕赤酵母胞内表达载体pPIC3.5,构建了重组质粒pPIC3.5/msp1,用电击转化毕赤酵母得到重组转化子,经PCR证实msp1基因已整合于毕赤酵母染色体中。含有重组表达质粒的毕赤酵母菌经甲醇诱导后表达出全长msp1重组蛋白。表达产物能与识别MSP1分子二硫键依赖构象表位的特异性单抗发生很强的反应,表明msp1重组蛋白至少在该表位构象上与天然蛋白一致。从毕赤酵母中分离得到大量msp1为开展该蛋白的结构与功能,特别是测定其疟疾保护性免疫提供可能。 相似文献
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Sadanand S 《The Yale journal of biology and medicine》2010,83(4):185-191
This brief review provides an overview of the pathogenesis of malaria, the human immune response to malaria, current methodology for malaria diagnosis, and current antimalarial drug regimens. The review also provides a critical evaluation of the research directions in the areas of drug design and vaccine design. 相似文献
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《Expert review of proteomics》2013,10(5):525-544
In recent years, the field of Raman spectroscopy has witnessed a surge in technological development, with the incorporation of ultrasensitive, charge-coupled devices, improved laser sources and precision Rayleigh-filter systems. This has led to the development of sensitive confocal micro-Raman spectrometers and imaging spectrometers that are capable of obtaining high spatial-resolution spectra and images of subcellular components within single living cells. This review reports on the application of resonance micro-Raman spectroscopy to the study of malaria pigment (hemozoin), a by-product of hemoglobin catabolization by the malaria parasite, which is an important target site for antimalarial drugs. The review aims to briefly describe recent studies on the application of this technology, elucidate molecular and electronic properties of the malaria pigment and its synthetic analog β-hematin, provide insight into the mechanism of hemozoin formation within the food vacuole of the parasite, and comment on developing strategies for using this technology in drug-screening protocols. 相似文献